mRNA_Ecto-sp13_S_contig16646.4764.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16646.4764.1
Unique NamemRNA_Ecto-sp13_S_contig16646.4764.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16646.4764.1 vs. uniprot
Match: D7FVU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVU1_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 5.220e-52
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 1
Query:    1 YTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSRDLFQALEGEGLRPKGGLLVYQYQPPFMPGFLRTNEVAVRV 252
            YTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSR+LFQALEGEGL PKGGLLVYQYQPPFMPGFLRTNEVAVRV
Sbjct:  156 YTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSRELFQALEGEGLTPKGGLLVYQYQPPFMPGFLRTNEVAVRV 239          
BLAST of mRNA_Ecto-sp13_S_contig16646.4764.1 vs. uniprot
Match: A0A7S0RNX4_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RNX4_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 2.790e-18
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 YTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSRDLFQALEGEGLRPKGGLLVYQYQPPFMPGFLRTNEVAVRV 252
            YT  TLPKPKD  V ++ V +  + A+ F G  P E +VA+ +R L   LE EGL+  G L V+QY PPF PGF+R NEV + V
Sbjct:  164 YTPATLPKPKDPDVVVREVPSRTLAALGFSGNLPSEARVADKARALRALLEAEGLKAHGPLHVWQYHPPFAPGFVRVNEVLLEV 247          
BLAST of mRNA_Ecto-sp13_S_contig16646.4764.1 vs. uniprot
Match: A0A2P6TRM9_CHLSO (SOUL heme-binding n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TRM9_CHLSO)

HSP 1 Score: 73.6 bits (179), Expect = 6.740e-14
Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 YTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSRDLFQALEGEGLRPKGG--LLVYQYQPPFMPGFLRTNEVAVRV 252
            YT  TLPKP +  V+IK V A  +VA+ + G SP E +V   +  L Q +   GL+PK G    V+QY PPF  G LRTNEV + V
Sbjct:  156 YTKETLPKPVNPNVEIKEVPARTLVALSWHGNSPREAEVERRTAQLQQLMAQAGLKPKQGGKTHVWQYDPPFQWGMLRTNEVLIEV 241          
BLAST of mRNA_Ecto-sp13_S_contig16646.4764.1 vs. uniprot
Match: UPI000A05067C (heme-binding protein n=1 Tax=Archangium violaceum TaxID=83451 RepID=UPI000A05067C)

HSP 1 Score: 72.0 bits (175), Expect = 1.870e-13
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 YTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSRDLFQALEGEGLRPKGGLLVYQYQPPFMPGFLRTNEVAVRV 252
            YT  TLP+P D RV+++ V   R+    F G +P+    AE +R L + L  +GLRP G  ++ QY  PFMP FLR NE+ V V
Sbjct:  136 YTLETLPEPVDSRVRLERVPGKRVAVRSFSGSAPESVAKAEQAR-LLEDLRAQGLRPVGEPVLAQYNSPFMPPFLRRNEILVDV 218          
BLAST of mRNA_Ecto-sp13_S_contig16646.4764.1 vs. uniprot
Match: A0A7L4QKL3_9ARCH (Heme-binding protein n=1 Tax=Methanomassiliicoccales archaeon TaxID=1906667 RepID=A0A7L4QKL3_9ARCH)

HSP 1 Score: 70.1 bits (170), Expect = 4.320e-13
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    1 YTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDE--KKVAEVSRDLFQALEGEGLRPKGGLLVYQYQPPFMPGFLRTNEVAVRV 252
            YT  T+P P D R+ I  V    +  +RFRG S  E  K+  EV  D+   + GEG+  +G   + +Y PPF PGFLR NEVAV V
Sbjct:   92 YTIDTIPVPMDERIIISEVKGRTLAVLRFRGHSSREVVKEKVEVLLDI---IGGEGISTRGEPFLLRYNPPFTPGFLRRNEVAVEV 174          
BLAST of mRNA_Ecto-sp13_S_contig16646.4764.1 vs. uniprot
Match: A0A1V4YYL5_9EURY (SOUL heme-binding protein n=1 Tax=Methanocella sp. PtaU1.Bin125 TaxID=1811677 RepID=A0A1V4YYL5_9EURY)

HSP 1 Score: 68.9 bits (167), Expect = 1.480e-12
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 YTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSRDLFQALEGEGLRPKGGLLVYQYQPPFMPGFLRTNEV 240
            YT  TLP+P +  ++ + VG H +  VRF G S  E +V E  R L   ++  GL PK    + +Y PP++PGF+R NEV
Sbjct:  104 YTLDTLPRPDNENIRFREVGDHNVAVVRFSGHS-HEPRVQEKMRQLVDWMQTNGLVPKSCCRLARYDPPWIPGFMRRNEV 182          
BLAST of mRNA_Ecto-sp13_S_contig16646.4764.1 vs. uniprot
Match: E1Z7Z0_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z7Z0_CHLVA)

HSP 1 Score: 68.9 bits (167), Expect = 3.480e-12
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 1
Query:    1 YTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSRDLFQALEGEGLRPKGGLLVYQYQPPFMPGFLRTNEVAVRV 252
            YT  TLP+P +  V IK + A  M A+ + G  P E +V     +L + L   GL+PKG +  +QY PPF   +LRTNEV   V
Sbjct:  152 YTKDTLPRPVNPNVVIKEMPARTMAALAWHGKPPREAEVQAKEAELLELLGEAGLKPKGPVHCWQYDPPFQWRWLRTNEVLFEV 235          
BLAST of mRNA_Ecto-sp13_S_contig16646.4764.1 vs. uniprot
Match: A2SU42_METLZ (SOUL heme-binding protein n=2 Tax=Methanocorpusculum TaxID=2192 RepID=A2SU42_METLZ)

HSP 1 Score: 67.4 bits (163), Expect = 4.480e-12
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 TAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSRDLFQALEGEGLRPKGGLLVYQYQPPFMPGFLRTNEVAVRV 252
            T+G +P+P D +V+I  V    +  + F+G + DE+ V EV   L + L   G+   G + + +Y PP++PGFLR NEV V V
Sbjct:   89 TSGEIPEPLDSKVRIVPVPEREIAVIAFKGKTHDEE-VKEVEGRLLKGLRDAGIEAAGEVFLMRYNPPWIPGFLRHNEVGVEV 170          
BLAST of mRNA_Ecto-sp13_S_contig16646.4764.1 vs. uniprot
Match: A0A1Y1HR99_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HR99_KLENI)

HSP 1 Score: 67.8 bits (164), Expect = 6.450e-12
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 YTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSRDLFQALEGEGLRPKGGLLVYQYQPPFMPGFLRTNEVAVRV 252
            YT    PKPKD RV IK + A ++  ++F G + +E   A+  + L +ALE  GL   G   + +Y PPF+P FL+TNEV + V
Sbjct:  131 YTMENAPKPKDSRVSIKELPARKLGVIKFSGNTTEEL-TAQKEKALREALEEAGLTVTGTPTLARYNPPFVPWFLKTNEVFLPV 213          
BLAST of mRNA_Ecto-sp13_S_contig16646.4764.1 vs. uniprot
Match: Q0W7I8_METAR (Uncharacterized protein n=2 Tax=Methanocella TaxID=570266 RepID=Q0W7I8_METAR)

HSP 1 Score: 65.9 bits (159), Expect = 2.250e-11
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 1
Query:    1 YTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSRDLFQALEGEGLRPKGGLLVYQYQPPFMPGFLRTNEVAVRV 252
            YT  TLP+P +  +    +  H++  +RF G S  E KV E   +L   L G  L PK    + +Y PP++PGFLR NE+ V V
Sbjct:  104 YTLETLPRPDNESIGFTEIPDHKVAVIRFSGHS-HEPKVREKIGELKDWLRGNDLEPKSSFRLARYDPPWIPGFLRHNEIMVDV 186          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16646.4764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVU1_ECTSI5.220e-5297.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0RNX4_9CHLO2.790e-1848.81Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A2P6TRM9_CHLSO6.740e-1446.51SOUL heme-binding n=1 Tax=Chlorella sorokiniana Ta... [more]
UPI000A05067C1.870e-1344.05heme-binding protein n=1 Tax=Archangium violaceum ... [more]
A0A7L4QKL3_9ARCH4.320e-1344.19Heme-binding protein n=1 Tax=Methanomassiliicoccal... [more]
A0A1V4YYL5_9EURY1.480e-1241.25SOUL heme-binding protein n=1 Tax=Methanocella sp.... [more]
E1Z7Z0_CHLVA3.480e-1241.67Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A2SU42_METLZ4.480e-1238.55SOUL heme-binding protein n=2 Tax=Methanocorpuscul... [more]
A0A1Y1HR99_KLENI6.450e-1241.67Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
Q0W7I8_METAR2.250e-1139.29Uncharacterized protein n=2 Tax=Methanocella TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16646contigEcto-sp13_S_contig16646:429..1398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score171.4
Seed ortholog evalue1.8e-40
Seed eggNOG ortholog2880.D7FVU1
Model size255
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0010287,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Exons2
EggNOG free text desc.SOUL heme-binding protein
EggNOG OGs2CY9I@1,2S2YK@2759
Cds size255
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.2953706-CDS-Ecto-sp13_S_contig16646:428..5361681462873.2953706-CDS-Ecto-sp13_S_contig16646:428..536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16646 429..536 +
1681462873.305852-CDS-Ecto-sp13_S_contig16646:1251..13981681462873.305852-CDS-Ecto-sp13_S_contig16646:1251..1398Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16646 1252..1398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16646.4764.1prot_Ecto-sp13_S_contig16646.4764.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16646 429..1398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16646.4764.1

>prot_Ecto-sp13_S_contig16646.4764.1 ID=prot_Ecto-sp13_S_contig16646.4764.1|Name=mRNA_Ecto-sp13_S_contig16646.4764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
YTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSRDLFQAL
EGEGLRPKGGLLVYQYQPPFMPGFLRTNEVAVRV*
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mRNA from alignment at Ecto-sp13_S_contig16646:429..1398+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16646.4764.1 ID=mRNA_Ecto-sp13_S_contig16646.4764.1|Name=mRNA_Ecto-sp13_S_contig16646.4764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=970bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16646:429..1398+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATACAGCAGGTACTCTACCCAAGCCCAAGGATGGCAGAGTCAAGATCAA GAGCGTAGGGGCACATCGTATGGTGGCGGTTCGCTTCCGGGGTCCGTCTC CCGACGAGGTGGGAGGGGGAACCCGTCAAATGGGGGGGCGAGTATGCCCC TCTTGGGCAGCTCAGCTAAAAGCAGAGTATCATGTAGCGCTGATTCTCGT TGCCCCCGTTGCTGGCTTGGGGGTGAGCTCGTGCTGCGACAGGCAGCTCC ACTCTGTCCTGCGAAAAGTGTTGTGGCCGCTGCCGCCACTTCGCTTTGCG GATGTTGATTGTTGCTGTTGCCGCCGTCGTGGTCGGTTTGGCGGTTCATC GGGGAACCTGCCTGCAGAACGCCGCATCCAATCCCGTATGACTCGGTCTT TCTTCGGTTCAACGAATGCTCTCCAGTAGGTGGTTGTCCCCCACAGTCGC GCTTTTGTAGGCCCCATCCACGAACAGCGCTTCGATGCCAAAAACTACCG ACAGTCCAAATGAAATTACCACACCACAGTGTCCACCGAACGTGCGTGGA TCGTGAACATAAGCTCGAGGATGGCACTCACGAAGAACGACACAAAGTCC ACGTACACCGGTACCTCTATGCCGCCGAAACACAGCCCGTGGTTCGCGTT TATTTGCTACGCCATCGGCAGAAAAACGCTTTTTGCCGACAGAGAGTAAA CTCGTTTCTCTCCTCTTCGAAAGCAGCGGAAATGACATCGCCGCCCTGCA GCCTGATTCTTCTCCGCCTCCTTCCCATCCTCGCCGCGGCCCCGACCCCT TTCGTGCGTCACCGACCTAATAGAAAAAAGTGGCAGAAGTTTCTCGAGAT CTTTTCCAGGCGCTAGAGGGCGAAGGGCTTAGACCCAAGGGCGGGTTATT GGTCTACCAGTACCAACCCCCGTTCATGCCCGGTTTCCTTCGAACAAACG AGGTTGCCGTGAGGGTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16646:429..1398+

>mRNA_Ecto-sp13_S_contig16646.4764.1 ID=mRNA_Ecto-sp13_S_contig16646.4764.1|Name=mRNA_Ecto-sp13_S_contig16646.4764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16646:429..1398+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATACAGCAGGTACTCTACCCAAGCCCAAGGATGGCAGAGTCAAGATCAA
GAGCGTAGGGGCACATCGTATGGTGGCGGTTCGCTTCCGGGGTCCGTCTC
CCGACGAGAAAAAAGTGGCAGAAGTTTCTCGAGATCTTTTCCAGGCGCTA
GAGGGCGAAGGGCTTAGACCCAAGGGCGGGTTATTGGTCTACCAGTACCA
ACCCCCGTTCATGCCCGGTTTCCTTCGAACAAACGAGGTTGCCGTGAGGG
TGTAA
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