mRNA_Ecto-sp13_S_contig16644.4763.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16644.4763.1
Unique NamemRNA_Ecto-sp13_S_contig16644.4763.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16644.4763.1 vs. uniprot
Match: D7FMZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ7_ECTSI)

HSP 1 Score: 488 bits (1256), Expect = 9.320e-174
Identity = 252/261 (96.55%), Postives = 257/261 (98.47%), Query Frame = 1 
Query:    1 QVEDFEIDMEVDTEKLEVFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRWSVRQLLSISSSLPDNSRFIFSGALVPKQIKRILKMKGLSAVVARDAESVVSMEESIDAERKRLAAKGLSRISQSRERYLLEKGGGENGANPRGPVGSLVSGLRTFVRIQEGQSVDDVAEIVTTIEQTCRNISVVGLWGGDMDPETCLNMLEAVRTKSGISNLRVAMEHLGPESSEWFTGLRGARRGPIMWTFNYEL 783
            +VEDFEIDMEVDTEKLEVFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSR SVRQLLSISSSLPDNSRFIFSGAL+PKQIKRILKMKGLSAVVARDAESVV+MEESIDAERKRLAAKGLSRISQSRERYLLEKGGGENGAN RGPVGSLVSGLRTFVRIQEGQSVDDVAEIV TIEQTCRNISVVGLWGGDMDPETCLNMLEAVRTKSGISNLRVAMEHLGP+S+ WFTGLRGARRGPIMWTFNYEL
Sbjct:    5 EVEDFEIDMEVDTEKLEVFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSR-SVRQLLSISSSLPDNSRFIFSGALIPKQIKRILKMKGLSAVVARDAESVVAMEESIDAERKRLAAKGLSRISQSRERYLLEKGGGENGANQRGPVGSLVSGLRTFVRIQEGQSVDDVAEIVNTIEQTCRNISVVGLWGGDMDPETCLNMLEAVRTKSGISNLRVAMEHLGPKSAGWFTGLRGARRGPIMWTFNYEL 264
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BLAST of mRNA_Ecto-sp13_S_contig16644.4763.1 vs. uniprot
Match: A0A836CMK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMK3_9STRA)

HSP 1 Score: 185 bits (470), Expect = 4.710e-54
Identity = 105/263 (39.92%), Postives = 166/263 (63.12%), Query Frame = 1 
Query:    1 QVEDFEIDMEVDTEKLEVFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRWSVRQLLSISSSLPDNSRFIFSGALVPKQIKRILKMKGLSAVVARDAESVVSMEESIDAERKRLAAKGLSRISQSRERYLLEKGGGENGANPRGPVGSLVSGLRTFVRIQEGQSVDDVAEIVTTIE--QTCRNISVVGLWGGDMDPETCLNMLEAVRTKSGISNLRVAMEHLGPESS-EWFTGLRGARRGPIMWTFNYE 780
            +VE F++D ++D  +L+   T IT+VK +G VPASS++VYDC+HG+WLL Q+AYDRKI+LF+SR S   +  +++ +PD+++ +F+GA +PK  KR+LK++ L +VV  DA +  ++ +++  ER RLAAKGLS++S++RERYL   GG    A    P  +++  +R F+++ E  S    A   T  E  + C  + V+GLWG   +      +L+ V+       L+V + + G E S +W  GL G  RG I+WTF +E
Sbjct:   41 EVESFDVDFDID--RLDAMNTYITDVKQKGYVPASSNIVYDCTHGQWLLMQVAYDRKIKLFASR-SAAGVADLAAIVPDDAQVLFTGAFLPKHAKRLLKLRNLHSVVVPDAAAARALSDAMADERARLAAKGLSKVSRARERYLTAGGG----AQLAPPDTAVLERIRVFLKLPEEGSTTAAAVAATLAEVREGCPGVEVMGLWG---EGRGAYALLQEVKAAVNAPKLKVTLPYRGVEESFKWNQGL-GEGRGSIIWTFEFE 292
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16644.4763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMZ7_ECTSI9.320e-17496.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMK3_9STRA4.710e-5439.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16644contigEcto-sp13_S_contig16644:1228..3355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size786
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_002900.1
Cds size762
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16644.4763.1prot_Ecto-sp13_S_contig16644.4763.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16644 1252..3355 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.2080536-UTR-Ecto-sp13_S_contig16644:1227..12511681462873.2080536-UTR-Ecto-sp13_S_contig16644:1227..1251Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16644 1228..1251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.2191777-CDS-Ecto-sp13_S_contig16644:1251..14211681462873.2191777-CDS-Ecto-sp13_S_contig16644:1251..1421Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16644 1252..1421 +
1681462873.2277029-CDS-Ecto-sp13_S_contig16644:1795..18461681462873.2277029-CDS-Ecto-sp13_S_contig16644:1795..1846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16644 1796..1846 +
1681462873.2367516-CDS-Ecto-sp13_S_contig16644:2015..21391681462873.2367516-CDS-Ecto-sp13_S_contig16644:2015..2139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16644 2016..2139 +
1681462873.2466319-CDS-Ecto-sp13_S_contig16644:2468..26741681462873.2466319-CDS-Ecto-sp13_S_contig16644:2468..2674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16644 2469..2674 +
1681462873.2617877-CDS-Ecto-sp13_S_contig16644:2933..30421681462873.2617877-CDS-Ecto-sp13_S_contig16644:2933..3042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16644 2934..3042 +
1681462873.2711442-CDS-Ecto-sp13_S_contig16644:3253..33551681462873.2711442-CDS-Ecto-sp13_S_contig16644:3253..3355Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16644 3254..3355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16644.4763.1

>prot_Ecto-sp13_S_contig16644.4763.1 ID=prot_Ecto-sp13_S_contig16644.4763.1|Name=mRNA_Ecto-sp13_S_contig16644.4763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
MEVDTEKLEVFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKI
RLFSSRWSVRQLLSISSSLPDNSRFIFSGALVPKQIKRILKMKGLSAVVA
RDAESVVSMEESIDAERKRLAAKGLSRISQSRERYLLEKGGGENGANPRG
PVGSLVSGLRTFVRIQEGQSVDDVAEIVTTIEQTCRNISVVGLWGGDMDP
ETCLNMLEAVRTKSGISNLRVAMEHLGPESSEWFTGLRGARRGPIMWTFN
YEL*
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mRNA from alignment at Ecto-sp13_S_contig16644:1228..3355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16644.4763.1 ID=mRNA_Ecto-sp13_S_contig16644.4763.1|Name=mRNA_Ecto-sp13_S_contig16644.4763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2128bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16644:1228..3355+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGAGGACTTCGAAATCGATATGGAAGTAGATACGGAAAAGTTGGA
GGTATTCGGGACGATCATCACGGAGGTGAAGATGGAAGGGCGTGTGCCGG
CGTCGTCCCACCTGGTGTATGACTGCTCGCACGGGGAATGGCTGCTAGCT
CAAATGGCCTACGACAGGAAGATTCGCCTCTTCTCGAGCAGGTGGTTACC
GCGGTCACCTCACTACACATGCATTGATGTGCTTGGTTTTCGCCATATTG
GTGTCGCACTCTCGCGATTTGGAAGCTCAGGTGTAATCCTGTGATGTTCG
AACATTTTCTTTCTACATTTTTGGCATATTGTCCACAGTCTACTACTGTG
GATAGTTTGCTTGGTTTTTAGTTTTAAGGGGCAACAGAGAAGCTACACAC
GATCCGCAGTGTACGCTCCTCATTTGTAGTGTTTTTGGTTGTCCCATTCA
ACTTTGGACCCCCATCCATCTTGAAGCCTCGGCCTGCCTGTCCAAATGAG
GCTTTTGATTTGTTGTGCCGCACGACCTTAAACGATGCTTGTCTTCTGAT
CCCACTCGCTTCTCACAGGTCGGTTCGGCAGCTCTTGAGCATCTCGTCGT
CATTGCCGGACAACTCGCGGTGAGCTGGTTTAAGCCTATTAATCCCCATC
TCACCATTCGTTCCAACCCCATTTTTTACCACACTCGCGTGTGTGATATG
CAATGTACGTTGACGATAGCCCTGTTCTCAGCTTACCACCACTGGATTCA
ACTTATTGTGGAATTTGTTCCCCCCCTTTTTGCCGCAGGTTTATCTTTTC
GGGGGCGCTTGTACCGAAGCAAATCAAACGTATTTTGAAGATGAAAGGAC
TCAGCGCTGTCGTGGCTAGAGACGCGGAGAGTGTGGTGTCTATGGAGGAG
TCCATTGATGCGGTGCGTCTAAATGAAGGCTACGTGAACGCTCTTTGGAT
TAGCGATCTCCTTCGAGTTCGACCTGTTTGCCGAAGAAATCTTGTTCGTC
ACAAGAGCTAAACTAAATTGCGACGCGGAAAGCTCTTCCTCCGACTTTTA
GTTTTTCATCCTTTGGTTATGTCCAGCGCGTACGCCACCGAGCTGCTGTG
TTTGCACGTGCATAGCACATGACCATCGTCTATCTGCTGTGTTGCCGGTG
TGTTGCGTTCGTGATGAGGAGTTGCACGAGACACTGAAAGCCCAAATATT
CTCGGCGGTTGTCTCTTGCTGGTGACGATTCTCATTTTCAGGAGCGAAAG
CGTTTGGCGGCGAAAGGACTCTCCAGAATAAGTCAATCTCGTGAGCGCTA
CTTGCTAGAAAAGGGAGGCGGCGAAAACGGAGCGAATCCGCGGGGACCAG
TGGGAAGTCTGGTTTCTGGGTTGCGCACGTTTGTACGAATACAGGAAGGG
CAGTCAGTCGACGATGTGGCCGAAATCGTCACCACCATCGAGCAAACGTG
AGCGAGACATGTGTCACTAGGTGCAATTTCATCGTGAACAGAATGTCATG
CACTTTTTCTCAATGCGTGTTCGACATAAAAAGGAGCGGGCGCAGCAACT
GCTCAAGATACCATGATCTCCTGTTAATTGGCCAAAACGCGAAGCGCGTG
TTGTGGGGGGAGCAAGGTGTGCCACTCCTATCAGATTGCTGTTGAACTCG
TAGAAAACCATTTGGAGGTCTCTCGTGATGATCCAGCGTTGGTTGCGTGT
CCACAGGTGCCGAAACATCTCGGTCGTTGGGCTGTGGGGAGGCGATATGG
ACCCGGAGACGTGTTTAAACATGCTCGAGGCCGTCCGTACAAAATCCGGC
ATATCCAATTTAAGGGTAAGAGATTGCTGTTGTTGTGTGCAGGTTCCCGC
AAGGTAGAGTAGTGCGGTCGGTTGCACACGTAAAAGATTCCTGGGCAGCT
TGACAACCGCATTTCGTATCATGTGTAGCACTTCCCCCGTATCTATCGAG
CCTTCATTTGCCACGCTCGATCACATTTTAACAACACGTCCCACTTTTTC
GCGTGTTTTCTCGCGTTGCGAACCAGGTTGCAATGGAGCACCTTGGCCCC
GAGAGTTCAGAGTGGTTCACGGGGTTACGTGGTGCAAGAAGAGGGCCGAT
AATGTGGACGTTCAACTACGAACTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16644:1228..3355+

>mRNA_Ecto-sp13_S_contig16644.4763.1 ID=mRNA_Ecto-sp13_S_contig16644.4763.1|Name=mRNA_Ecto-sp13_S_contig16644.4763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16644:1228..3355+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGTAGATACGGAAAAGTTGGAGGTATTCGGGACGATCATCACGGA
GGTGAAGATGGAAGGGCGTGTGCCGGCGTCGTCCCACCTGGTGTATGACT
GCTCGCACGGGGAATGGCTGCTAGCTCAAATGGCCTACGACAGGAAGATT
CGCCTCTTCTCGAGCAGGTGGTCGGTTCGGCAGCTCTTGAGCATCTCGTC
GTCATTGCCGGACAACTCGCGGTTTATCTTTTCGGGGGCGCTTGTACCGA
AGCAAATCAAACGTATTTTGAAGATGAAAGGACTCAGCGCTGTCGTGGCT
AGAGACGCGGAGAGTGTGGTGTCTATGGAGGAGTCCATTGATGCGGAGCG
AAAGCGTTTGGCGGCGAAAGGACTCTCCAGAATAAGTCAATCTCGTGAGC
GCTACTTGCTAGAAAAGGGAGGCGGCGAAAACGGAGCGAATCCGCGGGGA
CCAGTGGGAAGTCTGGTTTCTGGGTTGCGCACGTTTGTACGAATACAGGA
AGGGCAGTCAGTCGACGATGTGGCCGAAATCGTCACCACCATCGAGCAAA
CGTGCCGAAACATCTCGGTCGTTGGGCTGTGGGGAGGCGATATGGACCCG
GAGACGTGTTTAAACATGCTCGAGGCCGTCCGTACAAAATCCGGCATATC
CAATTTAAGGGTTGCAATGGAGCACCTTGGCCCCGAGAGTTCAGAGTGGT
TCACGGGGTTACGTGGTGCAAGAAGAGGGCCGATAATGTGGACGTTCAAC
TACGAACTGTGA
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