mRNA_Ecto-sp13_S_contig16643.4762.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16643.4762.1
Unique NamemRNA_Ecto-sp13_S_contig16643.4762.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16643.4762.1 vs. uniprot
Match: A0A6H5LAX6_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAX6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.870e-10
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:  175 DPVRRRGSRIFKPSKDGFAVRQRQHHNDHLSP 270
            DPVRRRGSRI KP KDGFAVRQRQHHNDHLSP
Sbjct:    9 DPVRRRGSRIIKPWKDGFAVRQRQHHNDHLSP 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16643.4762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LAX6_9PHAE1.870e-1093.75EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16643contigEcto-sp13_S_contig16643:1135..3010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size271
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.1701324-CDS-Ecto-sp13_S_contig16643:1134..12301681462873.1701324-CDS-Ecto-sp13_S_contig16643:1134..1230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16643 1135..1230 -
1681462873.178841-CDS-Ecto-sp13_S_contig16643:2836..30101681462873.178841-CDS-Ecto-sp13_S_contig16643:2836..3010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16643 2837..3010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16643.4762.1prot_Ecto-sp13_S_contig16643.4762.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16643 1135..3010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16643.4762.1

>prot_Ecto-sp13_S_contig16643.4762.1 ID=prot_Ecto-sp13_S_contig16643.4762.1|Name=mRNA_Ecto-sp13_S_contig16643.4762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
MGTSRELGAGLAGRTCLHKHQRRRRREKERECRARSPRAENTNAWTILLT
GQAARSTIDPVRRRGSRIFKPSKDGFAVRQRQHHNDHLSP
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mRNA from alignment at Ecto-sp13_S_contig16643:1135..3010-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16643.4762.1 ID=mRNA_Ecto-sp13_S_contig16643.4762.1|Name=mRNA_Ecto-sp13_S_contig16643.4762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1876bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16643:1135..3010- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAACAAGCAGGGAGTTAGGAGCTGGTTTGGCAGGCCGAACTTGTCT
CCACAAACACCAGAGAAGACGACGTAGAGAGAAAGAGAGAGAGTGCAGGG
CACGGTCGCCCAGGGCGGAGAATACGAACGCGTGGACTATACTACTCACT
GGCCAGGCTGCCAGGTCAACTATTGTGAGTGGGTGTGTCCAGAAAGGGTT
CCAAAAATTGATTCCCTTTCCCGTGCGAGTTGCACAAGACACAAGACACG
ACCATTGCAAGGACCATTGCACACGGCATCACGGCATGGGGTTGCACTTG
GACCAGATGCAACGTTCCGGCGCCCCCTGCTCATGGGTTTCATACGCATT
GCGCACCCAGATACAGCTTGCTTCTATCTCTACACAGCTTGAACAGAAAC
TAGCAACCTACCAGCTGTGGTTCAGAGGTTGATTTGTCGTGTTACCGGAA
GACGCGGAGCGATGCACACCCCTACAGACCAACTTTCAATAGCCCAATTG
CTCCACGAACAAGTGGGAGCGGTAGGAGCTCGGTACGTCTACGGAAAGCC
CTCGGCGAGATATTTCCAATACCACTATTACCGGTGTTGGCACAAGCTTG
GTTGTGGAGCAATCGATCTTTGAAAATTGGTCTAGTGGGACCTCTTACGA
GTAGTTGCTTCAAGGGTTGCTGGGGTTCGTTCGTGTTTACCATGGACGAA
CGAGCTCGACCACCACGCGTGCGACTCGGCGGATGCACAAGATGTTGTTA
ATGTTCCGTAAAGTGAGAACGGTGAGCACTCTCTGCCCTTCACGCTTGCA
TGCGGAGCGGGAGCTGAGCAGGGAAGCATCCGAAGGTCGTTAATCGACAA
AATCACCCCCGCCACGCGTTTTCGTGTTGACGCATGCGGACATCGGGTAA
CCATCTCGTATCCAATGCCGCGATGCACCGAGAAATGTAGAGGGAAGAGT
AGTAGGATCTCCCGGCGCAACACCCTTCAAGTTCGGTGCGGTTGAACGAA
GGTGCTGAATACGATGAATATGGCTGTTGCCGTTAAGTCGGAAGATGGTG
CTCGATACATCTACGGAATGCCGGTTTTCCTGCCGTAGGTTGCACAAGAT
TTCGCATCCCCTGGACCGATTTTCAAACTACAACCTCAATCACCGAAGAG
GATGTCACCGCATGATTCGTGTTCAGAGAGCTCTCCATGAAACGGTTCCA
ACGCCAACGTCGTCGGCAACGTCACTGTTTTTGCTGCCAAGTGATCAAAC
TTTGCGAAAATGTCGGGGGAGGGGGGGGAGGGGGGGGGGTATCGTACGCG
ACCTACGGTGTCCGCACAATGGAGAACGGAAATCTGGACGACTGTGTTCA
AGCAGATAAAATCTTCTCGGGGTACCTGCAGTAGATGTATCCGCACAAGC
TTTGGCGTACACAAACACAAACTAATAATTAATACACACGCACTTTCATG
CTTGCGACCCTGTTTGTCTCTATCTTCTCTTAACGTCTCTCTTTTTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCTCACTCTCT
CTCTCTTTCTCTCTGTTTCCAACCCCACCCTGCGGCCGGCCCTCCCCCCC
ACCCGTCGTCATTTTCCTCGGGCTCTTCTGCTGCCGTTGTCGTTGCTCCT
GCTGCCTTTTCTTGATGCACTGCTGTGGCAATCTATTCCCGTCCCGCTTC
GATTAACCGACAACCCCAACACACGTTCGTCGTACGACGGGGTTTGATAT
TTGCTGATGCCATCTGGAACCACCGGAAAGGATCCCGTGCGGCGCCGCGG
GAGTAGGATATTCAAGCCTTCGAAGGACGGGTTCGCCGTCCGGCAGCGGC
AGCACCACAACGACCATCTCTCACCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16643:1135..3010-

>mRNA_Ecto-sp13_S_contig16643.4762.1 ID=mRNA_Ecto-sp13_S_contig16643.4762.1|Name=mRNA_Ecto-sp13_S_contig16643.4762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16643:1135..3010- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAACAAGCAGGGAGTTAGGAGCTGGTTTGGCAGGCCGAACTTGTCT
CCACAAACACCAGAGAAGACGACGTAGAGAGAAAGAGAGAGAGTGCAGGG
CACGGTCGCCCAGGGCGGAGAATACGAACGCGTGGACTATACTACTCACT
GGCCAGGCTGCCAGGTCAACTATTGATCCCGTGCGGCGCCGCGGGAGTAG
GATATTCAAGCCTTCGAAGGACGGGTTCGCCGTCCGGCAGCGGCAGCACC
ACAACGACCATCTCTCACCC
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