mRNA_Ecto-sp13_S_contig1664.4761.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1664.4761.1
Unique NamemRNA_Ecto-sp13_S_contig1664.4761.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1664.4761.1 vs. uniprot
Match: D7FNN9_ECTSI (Phorbol-ester/DAG-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN9_ECTSI)

HSP 1 Score: 509 bits (1310), Expect = 5.370e-169
Identity = 327/378 (86.51%), Postives = 331/378 (87.57%), Query Frame = 1 
Query:    4 TRPVPIRRRSSDTDMVALFPRSSGSRRGXXXXXXXXXXXXXXXX---FFASTPGLEKTFSFVEEAEIVAGEDSDTPGSDDDDRDGRSSADGDDERSGHRRGRRLPAATRAHRWSKLVKSEAAGLTSAPATAAVAMTAGRRSSVGSXXXXXXXXXSRDSWRSNSSRMDSWVQLEGGVCGSCGGRVAGRHSAYGGG---SRSTRALVGDVEEDEGGLGDGWAAAEAPACWCRDEGGLSASPEDAPISVLANAPPPPRQNAVGDGGVAATTDAGRGTKPDKTESGAAADRNGLDRPQNGCCPAAGAGATXXXXXXXXXXXXXXXXXXXXDALRDVHGVLRELTQAVLAWCPQLTSSHEAQIQAVNCIDQRVFSETYGSVFG 1119
            TRPVPIRRRSSDTDMVALFPRS      XXXXXXXXXXXXXXXX   FFASTPGLEKTFSFVEEAEIVAGE SDTPGSDD             ERSG RRGRRLP ATRAHRWSK V+SEAAGL SAPATAAVA+TAGRRSSVG+         SRDSWRSNSSRMDSWVQLEGGVCG+CGGRVAGRHSA GGG   SRSTRALVGDVEEDEGGLGDGWAAAEAP CWCRDEGGLSASPEDAPISVLANAPPPPRQNAVGDGGVAATT A  GTKPDKTESGA ADRNGLDRPQNGCCPAAGAGATXXXXXXXXXXXXXXXXXXXX ALRDVHGVLRELTQAVLAWCPQLTSSHEAQIQAVNCIDQRVFSETYG VFG
Sbjct:  497 TRPVPIRRRSSDTDMVALFPRSXXXXXXXXXXXXXXXXXXXXXXXXXFFASTPGLEKTFSFVEEAEIVAGEGSDTPGSDDXXXXXXXXXXXXXERSGDRRGRRLPTATRAHRWSKPVRSEAAGLASAPATAAVAVTAGRRSSVGAAASAAAVA-SRDSWRSNSSRMDSWVQLEGGVCGNCGGRVAGRHSANGGGGSGSRSTRALVGDVEEDEGGLGDGWAAAEAPVCWCRDEGGLSASPEDAPISVLANAPPPPRQNAVGDGGVAATTGADSGTKPDKTESGAGADRNGLDRPQNGCCPAAGAGATXXXXXXXXXXXXXXXXXXXX-ALRDVHGVLRELTQAVLAWCPQLTSSHEAQIQAVNCIDQRVFSETYGPVFG 872
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1664.4761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNN9_ECTSI5.370e-16986.51Phorbol-ester/DAG-type domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1664contigEcto-sp13_S_contig1664:8518..9636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1120
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionProtein kinase C-like, phorbol ester/diacylglycerol-binding domain
Ec32 orthologEc-01_004820.1
Cds size1119
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.142853-CDS-Ecto-sp13_S_contig1664:8517..96361681462873.142853-CDS-Ecto-sp13_S_contig1664:8517..9636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1664 8518..9636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1664.4761.1prot_Ecto-sp13_S_contig1664.4761.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1664 8518..9636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1664.4761.1

>prot_Ecto-sp13_S_contig1664.4761.1 ID=prot_Ecto-sp13_S_contig1664.4761.1|Name=mRNA_Ecto-sp13_S_contig1664.4761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=373bp
CTRPVPIRRRSSDTDMVALFPRSSGSRRGPPAAAAAAAGATDDGGFFAST
PGLEKTFSFVEEAEIVAGEDSDTPGSDDDDRDGRSSADGDDERSGHRRGR
RLPAATRAHRWSKLVKSEAAGLTSAPATAAVAMTAGRRSSVGSAAAAAAA
AASRDSWRSNSSRMDSWVQLEGGVCGSCGGRVAGRHSAYGGGSRSTRALV
GDVEEDEGGLGDGWAAAEAPACWCRDEGGLSASPEDAPISVLANAPPPPR
QNAVGDGGVAATTDAGRGTKPDKTESGAAADRNGLDRPQNGCCPAAGAGA
TAAAASTEAGGGDEDVPGGDDDALRDVHGVLRELTQAVLAWCPQLTSSHE
AQIQAVNCIDQRVFSETYGSVFG
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mRNA from alignment at Ecto-sp13_S_contig1664:8518..9636+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1664.4761.1 ID=mRNA_Ecto-sp13_S_contig1664.4761.1|Name=mRNA_Ecto-sp13_S_contig1664.4761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1664:8518..9636+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCACCCGGCCGGTCCCGATTAGGCGGCGCTCCAGCGACACTGACATGGT
CGCGCTCTTCCCTCGAAGCAGCGGCAGCCGACGGGGTCCCCCCGCCGCAG
CAGCGGCGGCGGCGGGCGCTACCGACGATGGCGGTTTTTTCGCGAGCACG
CCCGGCCTGGAGAAGACGTTCAGCTTCGTAGAGGAGGCGGAGATTGTGGC
GGGAGAGGACAGCGATACTCCCGGCTCCGACGACGATGACAGGGACGGCC
GGAGCAGCGCGGATGGTGACGACGAGAGAAGTGGCCACAGGCGCGGCAGG
CGGTTGCCCGCCGCCACGCGCGCGCACCGTTGGAGCAAACTTGTGAAGTC
GGAGGCGGCGGGGTTGACTTCGGCCCCGGCAACGGCAGCGGTAGCGATGA
CGGCCGGCAGGCGCTCATCGGTAGGTAGTGCTGCTGCTGCTGCTGCTGCG
GCGGCTTCAAGAGACTCGTGGCGAAGCAACTCGTCCCGCATGGATAGCTG
GGTCCAGCTGGAAGGAGGCGTGTGCGGCAGCTGCGGCGGGAGAGTGGCGG
GAAGACACTCGGCGTACGGTGGTGGCAGTAGGTCGACGAGGGCGCTGGTG
GGAGACGTCGAGGAGGATGAAGGCGGGCTCGGGGACGGCTGGGCCGCCGC
CGAAGCCCCGGCGTGCTGGTGTAGGGACGAGGGAGGGCTTTCTGCTAGCC
CTGAGGATGCGCCGATCAGCGTTCTTGCCAACGCCCCGCCACCCCCTCGG
CAAAACGCCGTAGGTGATGGCGGCGTGGCGGCAACAACGGACGCGGGCAG
AGGGACGAAGCCTGACAAGACGGAGTCAGGAGCGGCAGCAGATCGAAACG
GATTGGACCGGCCGCAGAACGGGTGCTGTCCCGCTGCTGGAGCCGGGGCG
ACAGCCGCCGCCGCCTCCACGGAGGCGGGAGGCGGGGACGAAGATGTGCC
CGGCGGCGACGACGACGCGCTGCGAGACGTCCACGGCGTGCTCCGCGAGC
TCACGCAGGCCGTGCTGGCGTGGTGCCCCCAGCTTACCTCGTCTCACGAG
GCGCAGATCCAGGCGGTCAACTGCATCGACCAGCGGGTCTTCTCGGAGAC
GTACGGGTCGGTCTTCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1664:8518..9636+

>mRNA_Ecto-sp13_S_contig1664.4761.1 ID=mRNA_Ecto-sp13_S_contig1664.4761.1|Name=mRNA_Ecto-sp13_S_contig1664.4761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1664:8518..9636+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCACCCGGCCGGTCCCGATTAGGCGGCGCTCCAGCGACACTGACATGGT
CGCGCTCTTCCCTCGAAGCAGCGGCAGCCGACGGGGTCCCCCCGCCGCAG
CAGCGGCGGCGGCGGGCGCTACCGACGATGGCGGTTTTTTCGCGAGCACG
CCCGGCCTGGAGAAGACGTTCAGCTTCGTAGAGGAGGCGGAGATTGTGGC
GGGAGAGGACAGCGATACTCCCGGCTCCGACGACGATGACAGGGACGGCC
GGAGCAGCGCGGATGGTGACGACGAGAGAAGTGGCCACAGGCGCGGCAGG
CGGTTGCCCGCCGCCACGCGCGCGCACCGTTGGAGCAAACTTGTGAAGTC
GGAGGCGGCGGGGTTGACTTCGGCCCCGGCAACGGCAGCGGTAGCGATGA
CGGCCGGCAGGCGCTCATCGGTAGGTAGTGCTGCTGCTGCTGCTGCTGCG
GCGGCTTCAAGAGACTCGTGGCGAAGCAACTCGTCCCGCATGGATAGCTG
GGTCCAGCTGGAAGGAGGCGTGTGCGGCAGCTGCGGCGGGAGAGTGGCGG
GAAGACACTCGGCGTACGGTGGTGGCAGTAGGTCGACGAGGGCGCTGGTG
GGAGACGTCGAGGAGGATGAAGGCGGGCTCGGGGACGGCTGGGCCGCCGC
CGAAGCCCCGGCGTGCTGGTGTAGGGACGAGGGAGGGCTTTCTGCTAGCC
CTGAGGATGCGCCGATCAGCGTTCTTGCCAACGCCCCGCCACCCCCTCGG
CAAAACGCCGTAGGTGATGGCGGCGTGGCGGCAACAACGGACGCGGGCAG
AGGGACGAAGCCTGACAAGACGGAGTCAGGAGCGGCAGCAGATCGAAACG
GATTGGACCGGCCGCAGAACGGGTGCTGTCCCGCTGCTGGAGCCGGGGCG
ACAGCCGCCGCCGCCTCCACGGAGGCGGGAGGCGGGGACGAAGATGTGCC
CGGCGGCGACGACGACGCGCTGCGAGACGTCCACGGCGTGCTCCGCGAGC
TCACGCAGGCCGTGCTGGCGTGGTGCCCCCAGCTTACCTCGTCTCACGAG
GCGCAGATCCAGGCGGTCAACTGCATCGACCAGCGGGTCTTCTCGGAGAC
GTACGGGTCGGTCTTCGGC
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