mRNA_Ecto-sp13_S_contig1664.4760.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1664.4760.1 vs. uniprot
Match: D7FNN8_ECTSI (Fanconi anemia, complementation group I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN8_ECTSI) HSP 1 Score: 353 bits (907), Expect = 1.890e-110 Identity = 183/194 (94.33%), Postives = 187/194 (96.39%), Query Frame = 1
Query: 1 GDISPDHAPAIVNAVLAPLLEASKRQGRLAVGHECQLPEREMSEEAAASFLVVLDILPKVLSVTAGVPALSDEEPVPEDVRGLSGAQYKDRVVSCLFRARWPGAVSVGLCQTLRDLDLGERHLSVAVSRVLRHLRKNTKLHDLPALTYQLLLLAGRGCKEAALEGVIQVFNRLDAEAADREDAAAGAAGGIPIR 582
GDISPDHAPAIVNAVLAPLLEASK QGRL VGH+ Q EREMSEEAAASFLVVLDILPKVLSVTAGVP LS+E+PVPEDVRGLSGAQYKDRVVSCLFRARWPGAVSVG+CQTLRDLDLGERHLSVAVSRVLRHLRKN KLHDLPALTYQLLLLAGRGCKEAALEGVIQVFNRLDAEAADREDAAAGAAGGIPIR
Sbjct: 133 GDISPDHAPAIVNAVLAPLLEASKCQGRLTVGHQRQSSEREMSEEAAASFLVVLDILPKVLSVTAGVPTLSEEDPVPEDVRGLSGAQYKDRVVSCLFRARWPGAVSVGMCQTLRDLDLGERHLSVAVSRVLRHLRKNAKLHDLPALTYQLLLLAGRGCKEAALEGVIQVFNRLDAEAADREDAAAGAAGGIPIR 326
BLAST of mRNA_Ecto-sp13_S_contig1664.4760.1 vs. uniprot
Match: A0A6H5L4Q6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q6_9PHAE) HSP 1 Score: 339 bits (869), Expect = 1.920e-104 Identity = 179/194 (92.27%), Postives = 181/194 (93.30%), Query Frame = 1
Query: 1 GDISPDHAPAIVNAVLAPLLEASKRQGRLAVGHECQLPEREMSEEAAASFLVVLDILPKVLSVTAGVPALSDEEPVPEDVRGLSGAQYKDRVVSCLFRARWPGAVSVGLCQTLRDLDLGERHLSVAVSRVLRHLRKNTKLHDLPALTYQLLLLAGRGCKEAALEGVIQVFNRLDAEAADREDAAAGAAGGIPIR 582
GDISPDHAPAIVNAVLAPLLEASKRQ PE+EMSEEAAASFLVVLDILPKVLSVTAGVPALSDEEPVPE VRGLSGAQYKDRVVSCLFRARWPGAVSVG+CQTLRDLDLGERHLSVAVSRVLRHLRKN KLHDLPALTYQLLLLAGRGCKEAALEGVIQVFNRLDAEAADREDAAAGAAGGIPIR
Sbjct: 161 GDISPDHAPAIVNAVLAPLLEASKRQ----------FPEKEMSEEAAASFLVVLDILPKVLSVTAGVPALSDEEPVPEKVRGLSGAQYKDRVVSCLFRARWPGAVSVGMCQTLRDLDLGERHLSVAVSRVLRHLRKNAKLHDLPALTYQLLLLAGRGCKEAALEGVIQVFNRLDAEAADREDAAAGAAGGIPIR 344
BLAST of mRNA_Ecto-sp13_S_contig1664.4760.1 vs. uniprot
Match: UPI001E1DAE8E (Fanconi anemia group I protein-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DAE8E) HSP 1 Score: 75.9 bits (185), Expect = 1.420e-12 Identity = 46/122 (37.70%), Postives = 69/122 (56.56%), Query Frame = 1
Query: 160 LDILPKVLSVTAGVPALSDEEPVPEDVRGLSGAQYKDRVVSCLFRARW-PGAVSVGLCQTLRDLDLGERHLSVAVSRVLRHLRKNTKLHDLPALTYQLLLLAGRGCKEAALEGVIQVFNRLD 522
L++LPK+LS A++ +E + + G++YK V++ L +W PG+V V L RD+ L L + +VLR R+ + D+PAL YQLLLLA +G K+ LEG+I F D
Sbjct: 128 LELLPKILS------AIASQENIVYAGNHMKGSEYKGHVLNSLCSCKWDPGSV-VNLASMFRDVPLTNEELKFVIEKVLRMFRE-LDMGDIPALVYQLLLLATKGHKKLVLEGIINFFTEQD 241
BLAST of mRNA_Ecto-sp13_S_contig1664.4760.1 vs. uniprot
Match: A0A8J5XX49_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XX49_DIALT) HSP 1 Score: 74.7 bits (182), Expect = 3.570e-12 Identity = 57/138 (41.30%), Postives = 72/138 (52.17%), Query Frame = 1
Query: 163 DILPKVLSVTAGVPALSDEEPVPEDVRGLSGAQY---KDRVVSCLFRARWPGAVSVGLCQTLRDLDLGERHLSVAVSRVLRHLRKNTKLHDLPALTYQLLLLAGRGCKEAALEGVIQVFNRLDAEAADREDAAAGAAG 567
++LPK L++ A ++S D GL A+Y +D VV L RWP + + + TLR+L L E L V V + L +L LPAL YQLLLLAGRGCK L G+ F L E R AAAGA G
Sbjct: 130 ELLPKCLALLACADSVSYA-----DDSGLHTARYADFQDLVVHRLCEPRWPHSALLPMMNTLRELPLTEAQLRVVVRKALAG-APELELQALPALVYQLLLLAGRGCKLEVLSGLTGHFEAL--ELRTRRAAAAGACG 259
BLAST of mRNA_Ecto-sp13_S_contig1664.4760.1 vs. uniprot
Match: UPI001EE600E5 (Fanconi anemia group I protein-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE600E5) HSP 1 Score: 71.6 bits (174), Expect = 1.080e-11 Identity = 47/131 (35.88%), Postives = 69/131 (52.67%), Query Frame = 1
Query: 160 LDILPKVLSVTAGVPALSDEEPVPEDVRGLSGAQYKDRVVSCLFRARWPGAVSVGLCQTLRDLDLGERHLSVAVSRVLRHLRKNTKLHDLPALTYQLLLLAGRGCKEAALEGVIQVF---NRLDAEAADRE 543
L++ PK+LSV L +E V + G++YK V++ + +W + L RD+ L + L V +VLR +R + L DLPAL YQLLLLA +G K LEG+ F + L AE+ R+
Sbjct: 129 LELFPKLLSV------LLIQEAVVYGESSMKGSEYKSHVLNTVCSCKWNPQSVLHLAAMFRDVPLTQEELKFVVEKVLRGMR-DLDLQDLPALVYQLLLLAAKGHKRLVLEGITDFFIDQDNLQAESETRK 252
BLAST of mRNA_Ecto-sp13_S_contig1664.4760.1 vs. uniprot
Match: UPI00201F5705 (Fanconi anemia group I protein-like isoform X1 n=5 Tax=Haliotis TaxID=6452 RepID=UPI00201F5705) HSP 1 Score: 71.6 bits (174), Expect = 4.090e-11 Identity = 54/160 (33.75%), Postives = 78/160 (48.75%), Query Frame = 1
Query: 37 NAVLAPLLEASKRQGRLAVGHECQLPER--EMSEEAAASFLVVLDILPKVLSVTAGVPALSDEEPVPEDVRGLSGAQYKDRVVSCLFRARWPGAVSVGLCQTLRDLDLGERHLSVAVSRVLRHLRKNTKLHDLPALTYQLLLLAGRGCKEAALEGVIQVF 510
N V +LEA G + V +L R E +E L++ PK+LSV LS +E V + G++YK V++ + +W + L RD+ L + L + +VLR +R + L DLPAL YQLLLLA +G K LEG+ F
Sbjct: 90 NLVGLMMLEADSLPGTVLV----ELASRFVESIKEGTLQGGKALELFPKLLSV------LSVQETVVHGENSMKGSEYKSHVLNKVCSCKWNPQSVLHLAAMFRDVPLTQDELKFVLEKVLRGMR-DLDLQDLPALVYQLLLLAAKGHKRLVLEGITDFF 238
BLAST of mRNA_Ecto-sp13_S_contig1664.4760.1 vs. uniprot
Match: UPI001B88CE7F (Fanconi anemia group I protein-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88CE7F) HSP 1 Score: 71.2 bits (173), Expect = 5.540e-11 Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = 1
Query: 160 LDILPKVLSVTAGVPALSDEEPVPEDVRGLSGAQYKDRVVSCLFRARWPGAVSVGLCQTLRDLDLGERHLSVAVSRVLRHLRKNTKLHDLPALTYQLLLLAGRGCKEAALEGVIQVF 510
LD+ PK++S AL+ + V + G++YK +++ + ++W A + L LRD+ L L + ++LR K+ + DLPAL YQLLLLA +G K+ LEG+ + F
Sbjct: 129 LDLFPKLMS------ALASQNLVVFGENSMKGSEYKSHLLNSICSSKWAPASVIHLAAMLRDVPLSLDELRFVIKKILRSF-KDLDMQDLPALIYQLLLLANKGHKQLVLEGISKFF 238
BLAST of mRNA_Ecto-sp13_S_contig1664.4760.1 vs. uniprot
Match: A0A7S1SPG8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SPG8_9CHLO) HSP 1 Score: 64.3 bits (155), Expect = 2.800e-9 Identity = 39/133 (29.32%), Postives = 69/133 (51.88%), Query Frame = 1
Query: 151 LVVLDILPKVLSVTAGVPALSDEEPVPEDVRGLSGAQYKDRVVSCLFRARWPGAVSVGLCQTLRDLDLGERHLSVAVSRVLRHLRKNTKLHDLPALTYQLLLLAGRGCKEAALEGVIQVFNRLDAEAADREDA 549
L +++LPK + + + +++ E D + A Y + + L WPG+ + + LRD+ + ++ LR+ R+ K+ +LPALTYQLLLLA +G K + L+G+I +R + + DA
Sbjct: 64 LNAMELLPKCIHLLSSADSITQE-----DGSAMPVAAYIEYTLEKLLGLSWPGSGVARMLKVLRDVAMPQKTRVEVAQNALRYCREE-KVQELPALTYQLLLLANKGMKGSTLKGLIDEVSRREERLRCKRDA 190
BLAST of mRNA_Ecto-sp13_S_contig1664.4760.1 vs. uniprot
Match: V4AIN9_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AIN9_LOTGI) HSP 1 Score: 53.9 bits (128), Expect = 4.670e-5 Identity = 32/120 (26.67%), Postives = 57/120 (47.50%), Query Frame = 1
Query: 163 DILPKVLSVTAGVPALSDEEPVPEDVRGLSGAQYKDRVVSCLFRARWPGAVSVGLCQTLRDLDLGERHLSVAVSRVLRHLRKNTKLHDLPALTYQLLLLAGRGCKEAALEGVIQVFNRLD 522
D+ PK+L LS +E V + G + K +++ L RW + L +D+ + + + +++R + +L DLPA+ YQLLLLA +G + ++G+ F D
Sbjct: 71 DLFPKILH------ELSHQENVLYGDGNMKGTECKSHILNSLCSGRWDPQTIIHLSIMFKDVPMTSDEVKFVMEKIIRAF-PDVELQDLPAIIYQLLLLATKGHRRLVIDGITTFFMDQD 183 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1664.4760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1664.4760.1 >prot_Ecto-sp13_S_contig1664.4760.1 ID=prot_Ecto-sp13_S_contig1664.4760.1|Name=mRNA_Ecto-sp13_S_contig1664.4760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp GDISPDHAPAIVNAVLAPLLEASKRQGRLAVGHECQLPEREMSEEAAASFback to top mRNA from alignment at Ecto-sp13_S_contig1664:3157..4500- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1664.4760.1 ID=mRNA_Ecto-sp13_S_contig1664.4760.1|Name=mRNA_Ecto-sp13_S_contig1664.4760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1344bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1664:3157..4500- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1664:3157..4500- >mRNA_Ecto-sp13_S_contig1664.4760.1 ID=mRNA_Ecto-sp13_S_contig1664.4760.1|Name=mRNA_Ecto-sp13_S_contig1664.4760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1664:3157..4500- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |