mRNA_Ecto-sp13_S_contig16632.4754.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16632.4754.1
Unique NamemRNA_Ecto-sp13_S_contig16632.4754.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16632.4754.1 vs. uniprot
Match: D8LFN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN7_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.880e-30
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 VNDMAVVHHQAGVPFLESMRESVD*VLSGGSMADDVAIGAYLGMIEHAKSFKDVLCSKDMDVILS 195
            VNDMAVV HQA V FLESMRES+D VLSG SMADDVA+GA+LGMIEHAKSFKDVLCSKD DVILS
Sbjct:    2 VNDMAVVDHQANVCFLESMRESIDEVLSGSSMADDVALGAHLGMIEHAKSFKDVLCSKDTDVILS 66
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BLAST of mRNA_Ecto-sp13_S_contig16632.4754.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.320e-16
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   10 MAVVHHQAGVPFLESMRESVD*VLSGGSMADDVAIGAYLGMIEHAKSFKDVLCSKDMDVIL 192
            MA    QA V FLE MRES+D VLS GSMAD V + A LG+I+HAKSFKDVLCS+D DVIL
Sbjct:    1 MAFADQQANVRFLERMRESIDGVLSDGSMADGVELEACLGIIQHAKSFKDVLCSEDTDVIL 61
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BLAST of mRNA_Ecto-sp13_S_contig16632.4754.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 8.570e-12
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    4 NDMAVVHHQAGVPFLESMRESVD*VLSGGSMADDVAIGAYLGMIEHAKSFKDVLCSKDMDVIL 192
            +D A+   QA + FLE +RES+D VLS GS+ D VA+GA   MIE+A+SFK VL S+D DVIL
Sbjct:    5 DDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVIL 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16632.4754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFN7_ECTSI1.880e-3086.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIG7_9PHAE1.320e-1668.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS69_9PHAE8.570e-1257.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16632contigEcto-sp13_S_contig16632:3647..3841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size195
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size102
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462872.756351-UTR-Ecto-sp13_S_contig16632:3646..37391681462872.756351-UTR-Ecto-sp13_S_contig16632:3646..3739Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16632 3647..3739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462872.766418-CDS-Ecto-sp13_S_contig16632:3739..38411681462872.766418-CDS-Ecto-sp13_S_contig16632:3739..3841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16632 3740..3841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16632.4754.1prot_Ecto-sp13_S_contig16632.4754.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16632 3740..3841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16632.4754.1

>prot_Ecto-sp13_S_contig16632.4754.1 ID=prot_Ecto-sp13_S_contig16632.4754.1|Name=mRNA_Ecto-sp13_S_contig16632.4754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
MADDVAIGAYLGMIEHAKSFKDVLCSKDMDVILS
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mRNA from alignment at Ecto-sp13_S_contig16632:3647..3841+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16632.4754.1 ID=mRNA_Ecto-sp13_S_contig16632.4754.1|Name=mRNA_Ecto-sp13_S_contig16632.4754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16632:3647..3841+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTAACGACATGGCGGTCGTGCATCACCAGGCGGGCGTTCCATTCTTGGA
GAGCATGAGGGAAAGTGTCGATTAAGTGCTCTCTGGCGGGAGCATGGCAG
ACGATGTGGCAATCGGAGCATACCTTGGGATGATCGAGCACGCGAAGAGC
TTCAAGGACGTGTTGTGCAGCAAAGATATGGACGTCATCCTGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16632:3647..3841+

>mRNA_Ecto-sp13_S_contig16632.4754.1 ID=mRNA_Ecto-sp13_S_contig16632.4754.1|Name=mRNA_Ecto-sp13_S_contig16632.4754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16632:3647..3841+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGACGATGTGGCAATCGGAGCATACCTTGGGATGATCGAGCACGC
GAAGAGCTTCAAGGACGTGTTGTGCAGCAAAGATATGGACGTCATCCTGT
CG
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