mRNA_Ecto-sp13_S_contig16629.4752.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16629.4752.1
Unique NamemRNA_Ecto-sp13_S_contig16629.4752.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16629.4752.1 vs. uniprot
Match: D8LBY9_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBY9_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 1.850e-87
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 1
Query:    1 KDPRVRAWVPMAGCILAIPCWIGVVTGTNFYVSLAFLLAEYIAAECWFGGTVTILQEGLPPNVRGVGQGVFSTLSAFGTLAPPLMGYLIQQGGFELQDVLLYTVAAFYAISALFFFFVGESVLADHKRDGKLKEA 405
            +DPRVRAWVPMAGCILAIPCWIGVVTGTNFYVSLAFLLAEYIAAECWFGGTVTILQEGLPPNVRGVGQGVFSTLSAFGTLAPPLMGYLIQQGGFELQDVLLYTVAAFYAISALFFFFVGESVLADHKRDGKLKEA
Sbjct:  446 EDPRVRAWVPMAGCILAIPCWIGVVTGTNFYVSLAFLLAEYIAAECWFGGTVTILQEGLPPNVRGVGQGVFSTLSAFGTLAPPLMGYLIQQGGFELQDVLLYTVAAFYAISALFFFFVGESVLADHKRDGKLKEA 580          
BLAST of mRNA_Ecto-sp13_S_contig16629.4752.1 vs. uniprot
Match: A0A6V1R1E5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R1E5_HETAK)

HSP 1 Score: 130 bits (327), Expect = 3.280e-35
Identity = 63/128 (49.22%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    1 KDPRVRAWVPMAGCILAIPCWIGVVTGTNFYVSLAFLLAEYIAAECWFGGTVTILQEGLPPNVRGVGQGVFSTLSAFGTLAPPLMGYLIQQGGFELQDVLLYTVAAFYAISALFFFFVGESVLADHKR 384
            +DPRVRAW   AGC+LA+PCW  +    +FY ++A L  EY+AAECWFG    +LQ+ LP NVRGVGQG+F  L   G LAP  MG  +++G   LQ  LL+ V   Y  +AL F  +GE  LA+ +R
Sbjct:  100 RDPRVRAWTCAAGCLLALPCWAALCLSPSFYGAMAALFLEYVAAECWFGPVTAVLQDALPANVRGVGQGLFGFLITVGNLAPVAMGLAMERGA-TLQATLLWGVGGLYLAAALLFLRLGEVQLAEQRR 226          
BLAST of mRNA_Ecto-sp13_S_contig16629.4752.1 vs. uniprot
Match: A0A7S0J9A7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J9A7_9EUKA)

HSP 1 Score: 121 bits (304), Expect = 4.300e-32
Identity = 58/122 (47.54%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 KDPRVRAWVPMAGCILAIPCWIGVVTGTNFYVSLAFLLAEYIAAECWFGGTVTILQEGLPPNVRGVGQGVFSTLSAFGTLAPPLMGYLIQQGGFELQDVLLYTVAAFYAISALFFFFVGESV 366
             + R+  W+P AGC+LA+P W+G +   +  +SLA L AEY+ AECWFG TV+ LQ   P   +G+ QG+F+TL+  G LAP L+GYL++ G  EL   L Y V A YA SAL F   G  V
Sbjct:   76 SEQRMAQWIPAAGCVLAVPFWLGTMFAGSLELSLAALFAEYLVAECWFGPTVSSLQRAAPAGAQGLAQGLFNTLTLAGNLAPALVGYLLKYGNVELPVALAYIVPALYAASALAFVVAGGPV 197          
BLAST of mRNA_Ecto-sp13_S_contig16629.4752.1 vs. uniprot
Match: R1D5J9_EMIHU (MFS domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5J9_EMIHU)

HSP 1 Score: 108 bits (271), Expect = 3.290e-25
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    4 DPRVRAWVPMAGCILAIPCWIGVVTGTNFYVSLAFLLAEYIAAECWFGGTVTILQEGLPPNVRGVGQGVFSTLSAFGTLAPPLMGYLIQQGGFELQDVLLYTVAAFYAISALFFFFVGESVL 369
            +PR R WVP AG ++A+P W+  ++     +SLA L  EY+AAE WFG TV  LQ   P  ++G+ QGVFSTL+  G LAP  +G L++  GFEL   L   V+  Y  +A  F   GE+ L
Sbjct:  347 EPRARQWVPAAGSLVAVPFWLAALSAPTLQLSLAALFLEYLAAESWFGPTVAALQAATPARLQGLSQGVFSTLTLVGNLAPLAIGVLLRDQGFELAPTLGVLVSVLYVAAAAAFVVAGEAGL 468          
BLAST of mRNA_Ecto-sp13_S_contig16629.4752.1 vs. uniprot
Match: A0A0G4GFP1_VITBC (MFS domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GFP1_VITBC)

HSP 1 Score: 103 bits (256), Expect = 5.500e-23
Identity = 53/124 (42.74%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    1 KDPRVRAWVPMAGCILAIPCWIGVVTGTNFYVSLAFLLAEYIAAECWFGGTVTILQEGLPPNVRGVGQGVFSTLSAFGTLAPPLMGYLIQQGGFELQDVLLYTVAAFYAISALFFFFVGESVLA 372
            KD  +RAW+P  G  LA P W+GV    +F +S   LL EY+AAECWFG TV ILQ   P   RG  QG+F   +      P L+G L+    F L+DV+ + VAA Y +S   F  +G+ + A
Sbjct:  429 KDESIRAWIPAVGSFLAAPLWMGVCLADSFELSAFLLLLEYLAAECWFGPTVAILQSNTPSQYRGTAQGLFQFSNLLSNTLPVLLGSLMTS--FALKDVVAWGVAAAYMVSGGLFVALGQRIKA 550          
BLAST of mRNA_Ecto-sp13_S_contig16629.4752.1 vs. uniprot
Match: A0A7S3UPA2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPA2_HETAK)

HSP 1 Score: 92.8 bits (229), Expect = 6.130e-22
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    4 DPRVRAWVPMAGCILAIPCWIGVVTGTNFYVSLAFLLAEYIAAECWFGGTVTILQEGLPPNVRGVGQGVFSTLSAFGTLAP 246
             PRVRAWVP  GC+LA+P W   V+  +FY+S+  L  EY+ AE WFG  + ILQ+ LP NV+G+ QG+F    A G  AP
Sbjct:   21 SPRVRAWVPAGGCLLAVPLWTISVSVDSFYLSIGILFIEYLCAESWFGPFIAILQDELPLNVQGITQGLFGMAFALGNCAP 101          
BLAST of mRNA_Ecto-sp13_S_contig16629.4752.1 vs. uniprot
Match: A0A7S4B9C8_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B9C8_CHRCT)

HSP 1 Score: 92.0 bits (227), Expect = 8.180e-21
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 1
Query:    1 KDPRVRAWVPMAGCILAIPCWIGVVTGTNFYVSLAFLLAEYIAAECWFGGTVTILQEGLPPNVRGVGQGVFSTLSAFGTLAPPLMGYLIQQGGFELQDVLLYTVAAFYAISALFFFFVGESVLADHK 381
            + P     VP+ G +LA+P W+GV+   +F +S+A LL  Y+AAECW+G T++ LQ  LPP+V G  QGV + +   G  +P L+G L +     L+ +L + + + +A+    FF    S+ AD K
Sbjct:   45 RQPDRALLVPLCGSMLAVPLWLGVLQARSFSMSMACLLGAYLAAECWWGATMSSLQVALPPSVWGTVQGVVNAVQIVGNGSPLLIGTLARAQVGSLRTLLSFVIPSAHAVCVALFFCAKRSLKADAK 171          
BLAST of mRNA_Ecto-sp13_S_contig16629.4752.1 vs. uniprot
Match: A0A835ZCI8_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.140e-13
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 KDPRVRAWVPMAGCILAIPCWIGVVTGTNFYVSLAFLLAEYIAAECWFGGTVTILQ 168
            +DPR RAWVPMAG +LA+P W+G V   +F +++  L  +Y+ AECWFG TV +LQ
Sbjct:  440 RDPRFRAWVPMAGSLLAVPMWVGTVNCGDFGLAMTCLFLKYVLAECWFGPTVAVLQ 495          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16629.4752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LBY9_ECTSI1.850e-8799.26MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6V1R1E5_HETAK3.280e-3549.22Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S0J9A7_9EUKA4.300e-3247.54Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
R1D5J9_EMIHU3.290e-2544.26MFS domain-containing protein n=1 Tax=Emiliania hu... [more]
A0A0G4GFP1_VITBC5.500e-2342.74MFS domain-containing protein n=3 Tax=Vitrella bra... [more]
A0A7S3UPA2_HETAK6.130e-2250.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4B9C8_CHRCT8.180e-2137.01Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A835ZCI8_9STRA2.140e-1353.57Major facilitator superfamily domain-containing pr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16629contigEcto-sp13_S_contig16629:308..1258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score252.3
Seed ortholog evalue1.2e-64
Seed eggNOG ortholog2880.D8LBY9
Model size408
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.sphingolipid transporter activity
EggNOG OGsCOG0477@1,KOG1330@2759
Cds size378
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462872.6354725-UTR-Ecto-sp13_S_contig16629:307..3371681462872.6354725-UTR-Ecto-sp13_S_contig16629:307..337Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16629 308..337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462872.6469378-CDS-Ecto-sp13_S_contig16629:337..5221681462872.6469378-CDS-Ecto-sp13_S_contig16629:337..522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16629 338..522 +
1681462872.6636093-CDS-Ecto-sp13_S_contig16629:1065..12581681462872.6636093-CDS-Ecto-sp13_S_contig16629:1065..1258Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16629 1066..1258 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16629.4752.1prot_Ecto-sp13_S_contig16629.4752.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16629 338..1258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16629.4752.1

>prot_Ecto-sp13_S_contig16629.4752.1 ID=prot_Ecto-sp13_S_contig16629.4752.1|Name=mRNA_Ecto-sp13_S_contig16629.4752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MAGCILAIPCWIGVVTGTNFYVSLAFLLAEYIAAECWFGGTVTILQEGLP
PNVRGVGQGVFSTLSAFGTLAPPLMGYLIQQGGFELQDVLLYTVAAFYAI
SALFFFFVGESVLADHKRDGKLKEA*
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mRNA from alignment at Ecto-sp13_S_contig16629:308..1258+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16629.4752.1 ID=mRNA_Ecto-sp13_S_contig16629.4752.1|Name=mRNA_Ecto-sp13_S_contig16629.4752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=951bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16629:308..1258+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGACCCGCGAGTGCGCGCATGGGTGCCGATGGCGGGGTGTATCCTCGC CATTCCGTGCTGGATCGGGGTCGTCACCGGGACCAACTTCTACGTTTCGC TGGCCTTCCTGCTGGCGGAGTACATAGCGGCGGAATGTTGGTTCGGTGGC ACGGTGACGATACTGCAGGAGGGCCTTCCGCCCAACGTGCGAGGCGTTGG CCAAGGGGTTTTCAGGTGAATGTCCCTCTCTCTTCTCCCGCGAACGCGCG AAGATCGACAGGCGTGACGAAATGCGGTCGACACTACTACGTATCTTGGT CATTCGAGTAAATCTCGAAAAGGTGTGAACTACTGCTGCGAGGTATTCTG GGTGAAACGTGATCTTGTGTCCAGCAGGCGCGGTCCGGAAAACGTTGTGC CGATTACATGTAGCACAACACGGGACATTTCTATTCCAATGAAGCCGCTA GCACCTGTTTACGTCCTAGCACTTTGCTGTCCTTCAACGGCTTCTCTTGT CCGGGTGTTTCCACCCTCCCAAGTTTACCGCCTGCCCCACCTGCTCGCTG TAGTAGCCTTTGCAAGGAATTTAAGCTTGGTTGTAGTAGATGGGGCATGG GGCGGGGCGGGGGGCTAGTGGTAGGGTTAGAAATGGGGATACGAAGCCCC CCTCTCTTTTTCGTTGACTATCTCTTACATCCTCGCAAAGGCGTTCCGTT CGCTGACCCCCCCCCCCAACCCCTTACGGCGTTCGCACCTCAAAACCCCT TACAACAGCACACTGTCGGCATTCGGAACGCTGGCTCCTCCGCTGATGGG GTACTTGATCCAACAAGGGGGATTCGAGCTGCAGGACGTCCTCCTCTACA CCGTGGCGGCCTTCTACGCGATCAGCGCCCTGTTTTTCTTCTTCGTGGGG GAGTCGGTGTTGGCCGACCACAAGCGAGACGGCAAGCTGAAGGAGGCTTG A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16629:308..1258+

>mRNA_Ecto-sp13_S_contig16629.4752.1 ID=mRNA_Ecto-sp13_S_contig16629.4752.1|Name=mRNA_Ecto-sp13_S_contig16629.4752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16629:308..1258+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGGGTGTATCCTCGCCATTCCGTGCTGGATCGGGGTCGTCACCGG
GACCAACTTCTACGTTTCGCTGGCCTTCCTGCTGGCGGAGTACATAGCGG
CGGAATGTTGGTTCGGTGGCACGGTGACGATACTGCAGGAGGGCCTTCCG
CCCAACGTGCGAGGCGTTGGCCAAGGGGTTTTCAGCACACTGTCGGCATT
CGGAACGCTGGCTCCTCCGCTGATGGGGTACTTGATCCAACAAGGGGGAT
TCGAGCTGCAGGACGTCCTCCTCTACACCGTGGCGGCCTTCTACGCGATC
AGCGCCCTGTTTTTCTTCTTCGTGGGGGAGTCGGTGTTGGCCGACCACAA
GCGAGACGGCAAGCTGAAGGAGGCTTGA
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