mRNA_Ecto-sp13_S_contig16627.4750.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16627.4750.1
Unique NamemRNA_Ecto-sp13_S_contig16627.4750.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16627.4750.1 vs. uniprot
Match: D7G727_ECTSI (Coatomer subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G727_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.370e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1
Query:   25 KVVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 207
            +VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP
Sbjct:   15 QVVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 75          
BLAST of mRNA_Ecto-sp13_S_contig16627.4750.1 vs. uniprot
Match: A0A835ZBZ4_9STRA (Coatomer subunit delta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBZ4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 5.070e-28
Identity = 54/61 (88.52%), Postives = 61/61 (100.00%), Query Frame = 1
Query:   25 KVVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 207
            +VVLSA+ITT+NGKALLARQ+VDMSRIRIEGLLAAFPKLMGTGNKQHTFIET++VRY+YQP
Sbjct:   10 QVVLSAAITTKNGKALLARQYVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETDSVRYIYQP 70          
BLAST of mRNA_Ecto-sp13_S_contig16627.4750.1 vs. uniprot
Match: A0A7S3ZRB7_9STRA (Coatomer subunit delta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRB7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.100e-25
Identity = 47/60 (78.33%), Postives = 59/60 (98.33%), Query Frame = 1
Query:   28 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 207
            V+LSA++TT+NG+ALL+RQFVDM+R+R+EGLLAAFPKL GTGNKQHTF+ET++VRYVYQP
Sbjct:    2 VILSAAVTTKNGRALLSRQFVDMNRLRVEGLLAAFPKLQGTGNKQHTFVETDSVRYVYQP 61          
BLAST of mRNA_Ecto-sp13_S_contig16627.4750.1 vs. uniprot
Match: A0A6V1W7X3_HETAK (Coatomer subunit delta (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1W7X3_HETAK)

HSP 1 Score: 100 bits (250), Expect = 2.890e-25
Identity = 46/60 (76.67%), Postives = 57/60 (95.00%), Query Frame = 1
Query:   28 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 207
            VVLSA++ T+NG+ L+ARQFV+M+RIRIEGL+AAFPKL+G G+KQHTFIETE+VRYVYQP
Sbjct:    2 VVLSAAVVTKNGRVLVARQFVEMTRIRIEGLMAAFPKLLGGGSKQHTFIETESVRYVYQP 61          
BLAST of mRNA_Ecto-sp13_S_contig16627.4750.1 vs. uniprot
Match: A0A0A9CWY3_ARUDO (Coatomer subunit delta n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9CWY3_ARUDO)

HSP 1 Score: 98.2 bits (243), Expect = 4.100e-25
Identity = 48/60 (80.00%), Postives = 57/60 (95.00%), Query Frame = 1
Query:   28 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 207
            VVL+ASI +++GKAL++RQFVDMSRIRIEGLLAAFPKL+GTG KQHT++ETE VRYVYQP
Sbjct:    2 VVLAASIVSKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTG-KQHTYVETENVRYVYQP 60          
BLAST of mRNA_Ecto-sp13_S_contig16627.4750.1 vs. uniprot
Match: A0A7S2MQW5_9STRA (Coatomer subunit delta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MQW5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.040e-24
Identity = 48/60 (80.00%), Postives = 59/60 (98.33%), Query Frame = 1
Query:   28 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 207
            VVLSA++ T+NG+ALLARQ+VDM+RIRIEGLLAAFPKLMGTG++QHTF+ET++VRYVYQP
Sbjct:    2 VVLSAAVCTKNGRALLARQYVDMTRIRIEGLLAAFPKLMGTGSQQHTFLETDSVRYVYQP 61          
BLAST of mRNA_Ecto-sp13_S_contig16627.4750.1 vs. uniprot
Match: A0A8J5LDQ9_ZINOF (Coatomer subunit delta n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LDQ9_ZINOF)

HSP 1 Score: 98.6 bits (244), Expect = 2.150e-24
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 1
Query:   28 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 207
            VVL+ASI T+ GK L++RQFVDMSRIRIEGLLAAFPKL+GTG KQHTF+ETE VRYVYQP
Sbjct:    2 VVLAASIMTKTGKVLVSRQFVDMSRIRIEGLLAAFPKLVGTG-KQHTFVETENVRYVYQP 60          
BLAST of mRNA_Ecto-sp13_S_contig16627.4750.1 vs. uniprot
Match: F0YG49_AURAN (Coatomer subunit delta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG49_AURAN)

HSP 1 Score: 103 bits (257), Expect = 2.560e-24
Identity = 47/60 (78.33%), Postives = 57/60 (95.00%), Query Frame = 1
Query:   28 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 207
            VVLSAS+ T+NG+ L ARQFV+M+R+R+EGLLAAFPKLMGTGNKQHTFIET++VRYV+QP
Sbjct:    2 VVLSASVCTKNGRCLFARQFVEMNRLRVEGLLAAFPKLMGTGNKQHTFIETDSVRYVWQP 61          
BLAST of mRNA_Ecto-sp13_S_contig16627.4750.1 vs. uniprot
Match: A0A2K3L5C3_TRIPR (Coatomer subunit delta (Fragment) n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3L5C3_TRIPR)

HSP 1 Score: 97.4 bits (241), Expect = 3.880e-24
Identity = 48/61 (78.69%), Postives = 56/61 (91.80%), Query Frame = 1
Query:   25 KVVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 207
            KVVL+AS+  ++GK L++RQFVDMSRIRIEGLLAAFPKL+GTG KQHT+IETE VRYVYQP
Sbjct:   14 KVVLAASVVGKSGKVLVSRQFVDMSRIRIEGLLAAFPKLIGTG-KQHTYIETENVRYVYQP 73          
BLAST of mRNA_Ecto-sp13_S_contig16627.4750.1 vs. uniprot
Match: A0A7S2MU87_9STRA (Coatomer subunit delta (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MU87_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.960e-24
Identity = 47/60 (78.33%), Postives = 56/60 (93.33%), Query Frame = 1
Query:   28 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 207
            VVLSASI TR GKAL++RQFV+M+R+R+EGLLAAFPKLMG  +KQHTF+ET+TVRYVYQP
Sbjct:    2 VVLSASICTRGGKALVSRQFVEMNRMRVEGLLAAFPKLMGH-SKQHTFVETDTVRYVYQP 60          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16627.4750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G727_ECTSI2.370e-3098.36Coatomer subunit delta n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835ZBZ4_9STRA5.070e-2888.52Coatomer subunit delta n=1 Tax=Tribonema minus Tax... [more]
A0A7S3ZRB7_9STRA1.100e-2578.33Coatomer subunit delta n=1 Tax=Pelagomonas calceol... [more]
A0A6V1W7X3_HETAK2.890e-2576.67Coatomer subunit delta (Fragment) n=1 Tax=Heterosi... [more]
A0A0A9CWY3_ARUDO4.100e-2580.00Coatomer subunit delta n=1 Tax=Arundo donax TaxID=... [more]
A0A7S2MQW5_9STRA1.040e-2480.00Coatomer subunit delta n=1 Tax=Dictyocha speculum ... [more]
A0A8J5LDQ9_ZINOF2.150e-2481.67Coatomer subunit delta n=1 Tax=Zingiber officinale... [more]
F0YG49_AURAN2.560e-2478.33Coatomer subunit delta n=1 Tax=Aureococcus anophag... [more]
A0A2K3L5C3_TRIPR3.880e-2478.69Coatomer subunit delta (Fragment) n=2 Tax=Trifoliu... [more]
A0A7S2MU87_9STRA3.960e-2478.33Coatomer subunit delta (Fragment) n=1 Tax=Helicoth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16627contigEcto-sp13_S_contig16627:1..853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score120.9
Seed ortholog evalue2.3e-25
Seed eggNOG ortholog2880.D7G727
Model size207
KEGG koko:K20471
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005829,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0097708
Exons2
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG2635@1,KOG2635@2759
Cds size207
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462872.4889557-CDS-Ecto-sp13_S_contig16627:0..561681462872.4889557-CDS-Ecto-sp13_S_contig16627:0..56Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16627 1..56 -
1681462872.504172-CDS-Ecto-sp13_S_contig16627:702..8531681462872.504172-CDS-Ecto-sp13_S_contig16627:702..853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16627 703..853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16627.4750.1prot_Ecto-sp13_S_contig16627.4750.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16627 1..853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16627.4750.1

>prot_Ecto-sp13_S_contig16627.4750.1 ID=prot_Ecto-sp13_S_contig16627.4750.1|Name=mRNA_Ecto-sp13_S_contig16627.4750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
LPRIKTPPKVVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGT
GNKQHTFIETETVRYVYQP
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mRNA from alignment at Ecto-sp13_S_contig16627:1..853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16627.4750.1 ID=mRNA_Ecto-sp13_S_contig16627.4750.1|Name=mRNA_Ecto-sp13_S_contig16627.4750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=853bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16627:1..853- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCCCCGGATTAAAACGCCTCCGAAGGTGGTTCTTTCGGCATCGATTAC GACACGGAACGGGAAGGCTCTCCTGGCGAGGCAGTTCGTCGACATGAGCC GCATCCGTATCGAGGGTCTCTTGGCCGCTTTCCCGAAGCTCATGGGCACT GGTGAGAACGAGCGCCCCGCTCGATGGATTTACGAAGTCAGACAGCCGTG CGAAATACAGAGTCCATGCTACTCCGCTTGCTTATTCGATGGACTTCAAC CGCAGGTGTCGAATCCTCAAAGTCATCGTCAGGCATTTCCGGTGCTGGAG TTTCGTCGTGTAGAGTGCCGATTCGACGCACGTTGCGTGGTTTGGCTTGT TGACACCGGACGTTCCGCGAAGTTGATAGTGGCAAGAGTTGCCGCTTCGA CTGTCCCAGCAGGGCCGTTTGCTTCGATGTACACTGTAGTCAGTGCTGGG CTATGATTAGCATAGCTAGTCCGGCGCTTTCTACTTGGTCTCGGTTCTGA CCCACGTGCCAGTCTTGTGAGAACCGAATTGTTGGGGTAATGTACCTCAG GTGAAGAGGTTCCTCAGCGTTGACGCAGATCCAGCAGCCGCGTTGTGTCC GTCTTCGTCAACCCAACTTTTTTTTGGCATTTCTTTGCACTCGTACTTGG CATTTTGTACTGATGCTTTTGTTTTTCTCGGGTAACGTGGAGGTCGCTTC GTCTGTCTTCTTTTGGCGACTTCTTATGTTTACCGTGTCCCGCGTATGTT CGTCGGTCGATCTATCTGCTCATACGCATACGCACGCGCGCTCGCAGGCA ACAAGCAGCACACGTTCATCGAGACCGAGACGGTCCGGTACGTGTACCAG CCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16627:1..853-

>mRNA_Ecto-sp13_S_contig16627.4750.1 ID=mRNA_Ecto-sp13_S_contig16627.4750.1|Name=mRNA_Ecto-sp13_S_contig16627.4750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16627:1..853- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCCCCGGATTAAAACGCCTCCGAAGGTGGTTCTTTCGGCATCGATTAC
GACACGGAACGGGAAGGCTCTCCTGGCGAGGCAGTTCGTCGACATGAGCC
GCATCCGTATCGAGGGTCTCTTGGCCGCTTTCCCGAAGCTCATGGGCACT
GGCAACAAGCAGCACACGTTCATCGAGACCGAGACGGTCCGGTACGTGTA
CCAGCCG
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