mRNA_Ecto-sp13_S_contig16620.4746.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16620.4746.1
Unique NamemRNA_Ecto-sp13_S_contig16620.4746.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16620.4746.1 vs. uniprot
Match: A0A6H5L4K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4K4_9PHAE)

HSP 1 Score: 395 bits (1016), Expect = 3.210e-136
Identity = 197/207 (95.17%), Postives = 203/207 (98.07%), Query Frame = 1
Query:    1 QAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNLYGIFFIASYLACDSFTSQWQDRIFKKHKIDQYQMMFGVNCFSILFTTTSLLWDGGFAESFRFLSTYPAALYHVVTLSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSA 621
            QAPWLSFAPCS SNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDG KDGEET+TNLYGIFFIASYLACDSFTSQWQDRIFKKHKIDQYQMMFGVNCFSILFTT+SLLW+GGFAESFRF+STYPAA +HVV LSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLV+SA
Sbjct:  152 QAPWLSFAPCSFSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGHKDGEETHTNLYGIFFIASYLACDSFTSQWQDRIFKKHKIDQYQMMFGVNCFSILFTTSSLLWNGGFAESFRFMSTYPAAFFHVVILSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVLSA 358          
BLAST of mRNA_Ecto-sp13_S_contig16620.4746.1 vs. uniprot
Match: A0A836CQP3_9STRA (Solute carrier family 35, member B1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQP3_9STRA)

HSP 1 Score: 283 bits (725), Expect = 2.290e-92
Identity = 137/206 (66.50%), Postives = 162/206 (78.64%), Query Frame = 1
Query:    1 QAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNLYGIFFIASYLACDSFTSQWQDRIFKKHKIDQYQMMFGVNCFSILFTTTSLLWDGGFAESFRFLSTYPAALYHVVTLSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVS 618
            +AP + FAPCS SNV+SS+ QY  L +ISFPMQVVSKSCKV+PVMLVGKFVH KSYPW+EY+EAV I +GVS+FSL++S    D +   T  +G+  +A YL CDSFTSQWQDRIF+ +KIDQYQMM G+N FSI FTT +LLW G    S  F+  +P AL H+ TLS+TSATGQLFIFYTIK FGPIIFTIIMT RQM SLV+S
Sbjct:  130 KAPLVQFAPCSFSNVLSSWAQYECLKYISFPMQVVSKSCKVIPVMLVGKFVHHKSYPWIEYIEAVGITVGVSMFSLNESSAKDDEDARQTQFFGLLLVAMYLTCDSFTSQWQDRIFQTYKIDQYQMMLGINMFSIFFTTVALLWSGELFSSIAFVMDHPVALKHLATLSITSATGQLFIFYTIKNFGPIIFTIIMTCRQMFSLVIS 335          
BLAST of mRNA_Ecto-sp13_S_contig16620.4746.1 vs. uniprot
Match: A0A7S2V172_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V172_9STRA)

HSP 1 Score: 253 bits (646), Expect = 3.510e-80
Identity = 126/208 (60.58%), Postives = 161/208 (77.40%), Query Frame = 1
Query:    4 APWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGP--KDGE-ETNTNLYGIFFIASYLACDSFTSQWQDRIFKKHKIDQYQMMFGVNCFSILFTTTSLLWDGGFAESFRFLSTYPAALYHVVTLSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVS 618
            AP+  ++PCSLSNV+SS+ QY  L ++SFP+QVVSKSCKV+PVMLVGK VH K+Y WVEY EA  I +GVS+F+L+Q  G   K+G+ E  T   G+F +A YL CDSFTSQWQ R++  + ++Q+QMM GVNCFS+ FT  +LL  G   +S RFL   P AL +++TLSV SATGQLFI+YTIKKFGPI+FTIIMTTRQM+S+V+S
Sbjct:  138 APFYWYSPCSLSNVLSSWAQYECLKYVSFPVQVVSKSCKVIPVMLVGKMVHRKTYDWVEYSEAFFITLGVSIFTLAQQTGGAHKEGDAEKVTTAVGVFLLAMYLTCDSFTSQWQSRVYSSYHVNQFQMMLGVNCFSVFFTVVTLLQTGEGIKSLRFLGRNPEALVNILTLSVCSATGQLFIYYTIKKFGPIVFTIIMTTRQMLSMVIS 345          
BLAST of mRNA_Ecto-sp13_S_contig16620.4746.1 vs. uniprot
Match: A0A6S9KLE1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KLE1_HETAK)

HSP 1 Score: 253 bits (647), Expect = 4.410e-80
Identity = 124/206 (60.19%), Postives = 163/206 (79.13%), Query Frame = 1
Query:    1 QAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNLYGIFFIASYLACDSFTSQWQDRIFKKHKIDQYQMMFGVNCFSILFTTTSLLWDGGFAESFRFLSTYPAALYHVVTLSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVS 618
            +AP + +APCSLSNV+SS+ QY+ L +++FP+QVVSKSCK++PVMLVGKFVHGKSYP  EYLEA+ I +GVSLF+LS+   P  G   +T L GI  +A YL CDSFTSQWQ ++++K+ ++Q+QMM GVN  S+ FT  +LL  G F ++  F++  P A+ HV+ LS+TS TGQLFIFYTIKKFGP+IFTIIMTTRQM+S+V+S
Sbjct:  164 KAPLVWYAPCSLSNVLSSWAQYQCLKYVTFPVQVVSKSCKIIPVMLVGKFVHGKSYPIAEYLEALVITIGVSLFTLSEKQDPGKGAAESTTL-GIMLLAFYLCCDSFTSQWQSKVYEKYSVNQFQMMAGVNTCSVFFTLATLLKTGEFFQTLTFMADNPEAVSHVLVLSITSCTGQLFIFYTIKKFGPVIFTIIMTTRQMLSMVLS 368          
BLAST of mRNA_Ecto-sp13_S_contig16620.4746.1 vs. uniprot
Match: A0A8J2SJ07_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJ07_9STRA)

HSP 1 Score: 247 bits (631), Expect = 1.660e-78
Identity = 125/208 (60.10%), Postives = 160/208 (76.92%), Query Frame = 1
Query:    1 QAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPK--DGEETNTNLYGIFFIASYLACDSFTSQWQDRIFKKHKIDQYQMMFGVNCFSILFTTTSLLWDGGFAESFRFLSTYPAALYHVVTLSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVS 618
            +AP+  F+PCS SN+MSS+ QY  L ++SFP Q + KS KV+PVMLVGKF H K+YP +EY+EA+ I  GV+LF L++    +   G E +T L GI  +  Y+ CDSFTSQWQDR++K +++DQYQMMFGVN FS+LFT+ +LLW G    S  FL+  PAAL +V+TLS+TSATGQLFIFYTIKKFGPI+FTI+MTTRQM+SL VS
Sbjct:  100 RAPFYQFSPCSFSNIMSSWAQYECLKYVSFPTQTLFKSSKVIPVMLVGKFFHKKNYPLIEYIEAIGITAGVALFMLTEKAKKEHASGVEGDTVL-GILILCVYVFCDSFTSQWQDRVYKTYRVDQYQMMFGVNFFSLLFTSMNLLWTGEMGLSLAFLAANPAALANVLTLSLTSATGQLFIFYTIKKFGPIVFTIMMTTRQMLSLTVS 306          
BLAST of mRNA_Ecto-sp13_S_contig16620.4746.1 vs. uniprot
Match: F0YSJ6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YSJ6_AURAN)

HSP 1 Score: 243 bits (621), Expect = 2.060e-78
Identity = 118/200 (59.00%), Postives = 153/200 (76.50%), Query Frame = 1
Query:   19 FAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNLYGIFFIASYLACDSFTSQWQDRIFKKHKIDQYQMMFGVNCFSILFTTTSLLWDGGFAESFRFLSTYPAALYHVVTLSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVS 618
            F+PCS+SN++SS+ QY  L ++SFP Q + KS KV+PVMLVGKF H K+YPW+EY+EAV I +GV+LF L++      G+    ++ G+  ++ Y+ CDSFTSQWQDR++K + +DQY MMFGVN FS+ FT  +LL  G   ES  FL+T  AAL +V+TLS TSATGQLFIFYTIKKFGPI+FTI+MTTRQM+SL VS
Sbjct:    2 FSPCSISNIVSSWAQYECLKYVSFPTQTLFKSSKVIPVMLVGKFFHKKNYPWIEYVEAVGITLGVALFMLTEKAKKGGGDGAGDSVLGVLILSVYVFCDSFTSQWQDRVYKTYHVDQYAMMFGVNFFSLAFTACNLLATGEMGESLAFLATNEAALVNVLTLSFTSATGQLFIFYTIKKFGPIVFTIMMTTRQMLSLTVS 201          
BLAST of mRNA_Ecto-sp13_S_contig16620.4746.1 vs. uniprot
Match: A0A6V2X730_EMIHU (Hypothetical protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2X730_EMIHU)

HSP 1 Score: 229 bits (585), Expect = 4.990e-71
Identity = 116/206 (56.31%), Postives = 154/206 (74.76%), Query Frame = 1
Query:    4 APWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNLYGIFFIASYLACDSFTSQWQDRIFKKHK-IDQYQMMFGVNCFSILFTTTSLLWDGGFAESFRFLSTYPAALYHVVTLSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVS 618
            AP+ +FAPCS+SN +SS+ QY AL+++SF +Q +SKS KV+PVML+GK ++ KSY W+EY+EA+ I+ GVSLFS S+   P  G++  T L G   IA Y+  DSFTSQWQ +++K H  +DQ+QMMFGVN +SILFT  +LL  G    +  FL   PAA    VT+++TSATGQLFIFYTIK+FGP+ FTIIMTTRQ+ S+V+S
Sbjct:  146 APFYAFAPCSISNTLSSYGQYEALHYVSFGLQTLSKSTKVIPVMLMGKLLNKKSYKWIEYVEALMISFGVSLFSFSEKSAP--GDDKTTELLGYAMIALYIGADSFTSQWQTKVYKAHPGVDQFQMMFGVNTWSILFTLAALLASGELWTTIAFLKLNPAAFMDNVTIAITSATGQLFIFYTIKRFGPVAFTIIMTTRQIFSMVIS 349          
BLAST of mRNA_Ecto-sp13_S_contig16620.4746.1 vs. uniprot
Match: A0A7S0APC8_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0APC8_9DINO)

HSP 1 Score: 221 bits (563), Expect = 1.560e-68
Identity = 116/208 (55.77%), Postives = 153/208 (73.56%), Query Frame = 1
Query:    1 QAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNLYGIFFIASYLACDSFTSQWQDRIFKKH-KIDQYQMMFGVNCFSILFTTTSLLWDGGFAESFRFLSTYPAALYHVVTLSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSA 621
            +AP ++FAPCSLSN  SSF QY+AL F+SFP+Q +SKS KV+PVMLVG+ V+ + Y  VEY EA+ I+ GVS+FSLS+  G  D +   T L G+  +A Y+A DSFTSQWQ R++K H K+DQ+QMMF  N +SIL T T+LL  G    +  FL   P+AL   + ++VTSA GQLFIF TI++FGP++FT+IMTTRQM S+V+SA
Sbjct:   81 RAPLMAFAPCSLSNSFSSFAQYQALRFVSFPLQTLSKSSKVIPVMLVGRLVNKRKYSLVEYAEALTISAGVSVFSLSEWTGRAD-DSIETKLRGVLILALYVASDSFTSQWQSRVYKDHPKVDQFQMMFATNMWSILLTLTALLASGELVVTAAFLVENPSALLDNLAIAVTSAVGQLFIFLTIRRFGPVVFTLIMTTRQMFSVVLSA 287          
BLAST of mRNA_Ecto-sp13_S_contig16620.4746.1 vs. uniprot
Match: W7TWN3_9STRA (Solute carrier family 35 member b2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWN3_9STRA)

HSP 1 Score: 223 bits (569), Expect = 9.020e-68
Identity = 112/207 (54.11%), Postives = 151/207 (72.95%), Query Frame = 1
Query:    1 QAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTN-LYGIFFIASYLACDSFTSQWQDRIFKKHKIDQYQMMFGVNCFSILFTTTSLLWDGGFAESFRFLSTYPAALYHVVTLSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVS 618
            +AP   +AP SLSN++SS+ QY AL ++SFP QV+SKS K++PVMLVG+ +H +SYPW EY++A  I +GV++FSL++   PK G +   +   G   +A YL CDSFTSQWQD++FKK  + Q+QMM GVN  SI+FT  SLL  G  A S  F+  +P A  HV  LS+ SA+GQLFIFYTIK+FG I+FTI+MT RQM+S+++S
Sbjct:  214 KAPLWQYAPASLSNILSSWAQYEALKYVSFPTQVLSKSSKIIPVMLVGRLLHRRSYPWAEYVDAALITLGVTIFSLNEKK-PKAGHDGGADSTLGYILLAMYLMCDSFTSQWQDKVFKKFHVSQFQMMLGVNLCSIIFTGASLLQTGQGASSLAFMMRHPDAAQHVFILSLCSASGQLFIFYTIKQFGAIVFTIMMTIRQMLSMILS 419          
BLAST of mRNA_Ecto-sp13_S_contig16620.4746.1 vs. uniprot
Match: A0A7S2HMN6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HMN6_9STRA)

HSP 1 Score: 216 bits (551), Expect = 1.650e-66
Identity = 110/207 (53.14%), Postives = 150/207 (72.46%), Query Frame = 1
Query:    4 APWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNLYGIFFIASYLACDSFTSQWQDRIFKKHK--IDQYQMMFGVNCFSILFTTTSLLWDGGFAESFRFLSTYPAALYHVVTLSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVS 618
            AP+  F+PCS+SNV+SS+ QY AL ++SFP+QV+ KS K++PVML+G F+HG  Y   +YLEA+AIA GV++F+ S+S G   G+E  T   GI  +  Y+ CD+FT+QWQ RI K++   +D YQMMF VN FSI+FT + LL  G    +  F++ +P  L H+   SVTSATGQLFIFYTI KFGP++ TIIM TRQM+S+++S
Sbjct:   99 APFWYFSPCSMSNVLSSYGQYAALKYVSFPLQVLFKSTKLIPVMLMGTFLHGGKYTPRDYLEAMAIAAGVAIFTFSKSSG---GKEVETEPIGILLLVMYVTCDAFTNQWQKRINKEYSKSVDSYQMMFAVNSFSIMFTVSYLLLSGEMWIALEFITYHPKCLAHIFINSVTSATGQLFIFYTILKFGPVVLTIIMNTRQMISMIIS 302          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16620.4746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4K4_9PHAE3.210e-13695.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CQP3_9STRA2.290e-9266.50Solute carrier family 35, member B1 n=1 Tax=Tribon... [more]
A0A7S2V172_9STRA3.510e-8060.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6S9KLE1_HETAK4.410e-8060.19Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A8J2SJ07_9STRA1.660e-7860.10Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YSJ6_AURAN2.060e-7859.00Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6V2X730_EMIHU4.990e-7156.31Hypothetical protein n=3 Tax=Emiliania huxleyi Tax... [more]
A0A7S0APC8_9DINO1.560e-6855.77Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
W7TWN3_9STRA9.020e-6854.11Solute carrier family 35 member b2 n=2 Tax=Monodop... [more]
A0A7S2HMN6_9STRA1.650e-6653.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16620contigEcto-sp13_S_contig16620:1..2617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score410.2
Seed ortholog evalue5.6e-112
Seed eggNOG ortholog2880.D7G7H9
Model size621
KEGG koko:K15276
KEGG TC2.A.7.11.2,2.A.7.11.3
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.UDP-galactose transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG1581@2759
Cds size621
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462872.270256-CDS-Ecto-sp13_S_contig16620:0..1891681462872.270256-CDS-Ecto-sp13_S_contig16620:0..189Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16620 1..189 -
1681462872.2805831-CDS-Ecto-sp13_S_contig16620:583..7421681462872.2805831-CDS-Ecto-sp13_S_contig16620:583..742Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16620 584..742 -
1681462872.2890317-CDS-Ecto-sp13_S_contig16620:942..10261681462872.2890317-CDS-Ecto-sp13_S_contig16620:942..1026Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16620 943..1026 -
1681462872.2973578-CDS-Ecto-sp13_S_contig16620:1967..20571681462872.2973578-CDS-Ecto-sp13_S_contig16620:1967..2057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16620 1968..2057 -
1681462872.3055367-CDS-Ecto-sp13_S_contig16620:2518..26171681462872.3055367-CDS-Ecto-sp13_S_contig16620:2518..2617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16620 2519..2617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16620.4746.1prot_Ecto-sp13_S_contig16620.4746.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16620 1..2617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16620.4746.1

>prot_Ecto-sp13_S_contig16620.4746.1 ID=prot_Ecto-sp13_S_contig16620.4746.1|Name=mRNA_Ecto-sp13_S_contig16620.4746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=207bp
QAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKF
VHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNLYGIFFIAS
YLACDSFTSQWQDRIFKKHKIDQYQMMFGVNCFSILFTTTSLLWDGGFAE
SFRFLSTYPAALYHVVTLSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQM
VSLVVSA
back to top

mRNA from alignment at Ecto-sp13_S_contig16620:1..2617-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16620.4746.1 ID=mRNA_Ecto-sp13_S_contig16620.4746.1|Name=mRNA_Ecto-sp13_S_contig16620.4746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2617bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16620:1..2617- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGCCATGGCTGAGTTTCGCTCCCTGCTCGTTGTCCAACGTCATGAG CAGCTTCTGCCAGTACCGCGCCCTCAACTTCATCTCCTTCCCGATGCAGG TATGTGTGTGTGTGGTGTGTGTGGGTAAGGTCGGGAGTGTTCGTGCGTGT TGTTGTCGATTGCAGTGATGAAGCTGGTATGTCTCTCGTGTGTAGGGGTA GTTGTGCGAGATAGTGCCGGTTGTGATGAAGCCGGGTGGGGAAGGTCCAC GAAATACCTCTTACCACCCTTCTGATGTTCGCCTTCACGCTGTGATGATA TTCGTGGTAACACTTGAACGAGATGTCTAGGTCGGGCTTCGCAGACTGTG TCTGTGATGTAGAAACTGGGCACTCATGATCATGCACAGTACACGAAAAC TCAAGATTAGGTATGGTTTTTTCTTACACGGCGGTTGACACCCTTTGCCA TGTACTGCTGCAACGCTGCTCTTGGGATGGCGATTCCGCCGCCGAGCATA CAACACATGGTACTGATTTTGTTGACGCCGACCAAACATAATGTTACAAT TATAATACAGGTTGTGTCGAAGAGCTGCAAAGTGGTACCAGTGATGCTGG TCGGCAAGTTCGTGCACGGGAAGTCATACCCTTGGGTGGAGTACTTGGAG GTGAGTTCAGGAGGAGTCACGCTTGTCTAGTTTCGTTCCATCCCCACTCC TCTTGGTTCGTACCGGCTCTCTCGCTCACCTATCCTACAACGTGTCAGTC CCGTTGAGGAGTTTCTCAGGCCTTGATTTGAAATGAAGGGTTGAGATTGC TGCTTCTCCACGCGAGGGGGGCGGGGGGCCAGGCTGCCAAAGCCAACACT AGCCGATCGATTGAACCCCCCATCGTGTGCATACAGTAGATGATCGATGT CGAAGTTTGTTGGTCAGGGCGTTTGTTGAGGGTTTATTTTCACCCTAATC TAACTCTGATGCACTGGTATTTACGTATTGACACTGTCGCTCACGACGAG CAATACAAAGCCATGTACATGGCCTTTGTGGGGAAAAGCGCCGACAATAC CCAAGGGTGTGAGGGTGTGAGATATGGTGTCTTCCTTCCTTCCCTGTGGC GATCCGATGTGTCGTGCGATCCATAACCCATCACACGACAGTTTTCCCTG GGTCGCGCAAGGTAAGGTAGGTTGGAGGAGGCACACGAATGTGTCGGTGG CGAAGGATAATTTTTTTAGATACAAATGCTTCACGATCCCCAGGGGAGAA AACGTCCCCAGAGACATGGATAGCGCGAGAGAGGATGTAGTAGCGTTCGT GAGACGATGTTATAGGCAGGCTTCAGAGCCTGGAAAGGGCGAGATTGCTC TGCGGCAAGCGTGAGGCCGCCAATTCCCTCTGCCCATCGTGGATACAACC AAAACAAGGCTCACACGTCTCATCACTAACACCACACGTGTACGTCTCAG ACTGAGATCCGGTATTACGGGTGCAATGACTATTGCTCGGGAACGTTCTG TTGTATCTGCAGTCCTCACTGCCGCCTCACCATCCTGTCCGTCGTGTCTT TTTTTTTTTTTGTCTTGTTTGATTCTCTCTACCTCCGACAGGCGGTCGCG ATCGCTATGGGAGTGAGCCTGTTTTCCTTGTCCCAGTCTGACGGCCCTAA GGATGGGGAGGAGACCAATACTAATGTGAGAGGGGGAATGGGAGCAGCTC TTTTACACGCCGCTTGTCCCTTGCGCCTACCGGTGTAGAATCCACCCGCC TAGCCGGTGGTGAAAAGTAGTGCCCGTCGTGTTTGGTTCCTCCACGCTTC TTCTTCTGGCGTCCATGATCCGACCACTTTTGGCCGTTGGAACTGCCCTC TCCCCCCCCCCCCCCCCCCCAACAGTTGTACGGCATCTTCTTCATCGCCT CCTACCTGGCGTGCGATAGCTTCACCTCTCAGTGGCAGGACCGCATCTTC AAGAAGCACAAGATCGACCAGTACCAGATGATGTTCGGCGTCAACTGCTT CTCCATCCTCTTCACCACCACCTCGCTCCTATGGGTTAGTATTAGTAGTT ACAGCAAAGTTGAAGGTTTGGTGCCGAACTATCGAGTCGCTTGTTTGTCT AGATTATTTTCCGCACGATTTCATCCCTGTTTTCTCTGAGGCTCGGCGAT GCGACGGTACGGCGTTGTTTTCTTCCGTTTTTTTTTCCCGACGGTTTCAT CATGACTCCCTTCCTCGCTGCCTTGTCGCCGCTGCGTTGCCGCTGTTTTT CCCTTCAACCTCGACGAGTCTCTAGGTAGTGCATGAGCGCAGAGCGGCTA ATTTGCTCGAAGCCCTCTCCAGTAGTCATCGCCCATCTCATTCATTCTCT TCTCCAACGTCTTTCTTTTTTTAGTTTACGCGTTCGCCTGATTATGCACA CCCCGGTTTGTACCGCCTCCCACCCCAGGACGGCGGGTTCGCCGAGAGCT TCCGCTTCCTGTCCACGTACCCTGCGGCTCTCTACCACGTGGTGACTCTG TCGGTCACCTCCGCCACCGGGCAGCTGTTCATCTTCTACACCATCAAGAA GTTCGGGCCCATCATCTTCACCATCATCATGACCACGAGACAAATGGTCT CCCTCGTTGTGTCGGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16620:1..2617-

>mRNA_Ecto-sp13_S_contig16620.4746.1 ID=mRNA_Ecto-sp13_S_contig16620.4746.1|Name=mRNA_Ecto-sp13_S_contig16620.4746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16620:1..2617- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGCCATGGCTGAGTTTCGCTCCCTGCTCGTTGTCCAACGTCATGAG
CAGCTTCTGCCAGTACCGCGCCCTCAACTTCATCTCCTTCCCGATGCAGG
TTGTGTCGAAGAGCTGCAAAGTGGTACCAGTGATGCTGGTCGGCAAGTTC
GTGCACGGGAAGTCATACCCTTGGGTGGAGTACTTGGAGGCGGTCGCGAT
CGCTATGGGAGTGAGCCTGTTTTCCTTGTCCCAGTCTGACGGCCCTAAGG
ATGGGGAGGAGACCAATACTAATTTGTACGGCATCTTCTTCATCGCCTCC
TACCTGGCGTGCGATAGCTTCACCTCTCAGTGGCAGGACCGCATCTTCAA
GAAGCACAAGATCGACCAGTACCAGATGATGTTCGGCGTCAACTGCTTCT
CCATCCTCTTCACCACCACCTCGCTCCTATGGGACGGCGGGTTCGCCGAG
AGCTTCCGCTTCCTGTCCACGTACCCTGCGGCTCTCTACCACGTGGTGAC
TCTGTCGGTCACCTCCGCCACCGGGCAGCTGTTCATCTTCTACACCATCA
AGAAGTTCGGGCCCATCATCTTCACCATCATCATGACCACGAGACAAATG
GTCTCCCTCGTTGTGTCGGCC
back to top