mRNA_Ecto-sp13_S_contig1662.4745.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1662.4745.1 vs. uniprot
Match: D8LBG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBG2_ECTSI) HSP 1 Score: 1473 bits (3813), Expect = 0.000e+0 Identity = 818/845 (96.80%), Postives = 825/845 (97.63%), Query Frame = 1
Query: 688 MDISDDEFFFESSRHLEDDGRSDATAGRVQAGLQELEGMELDEDIALPLAPGMDALTHRVSVARLQHVSNLAWCLGSWLPHLASLAVLLIRLEHSKNGRGTDENNGLSSPHVHIRKLCGPGAYGGGASDYADGDTASITTSGPRAASTAHETPSTLGSDDSFAAGKRDRIGTKAEKEFTNLFESWLNSTTTVLRAAIFGDDTVSDKTSGSSNGRRSGASTVNATPLFAGNKQGGLSNKYAGEPHLKDPLDSRYLRQAFSSLAHLYDSLSQALGGSWEGDMVLSPGLRALEKACLLARLSLVKEAQALHVRSEMAALATEAKGLMDVDPWLAPEPPHPPGGTRLPHLFGALAHERMINLVELLPRAEWSAAEITHGLGDAVQCLLSCVTALGTRAYEASRMDHSNGAPLALSGGATTTGGHGEEGLSADHQLLCQIGNCLQLETVILPDLWDTAVDLFDASRAGVVSDRKRTQKVQEKVMNKYLKHKYRELKMYVKNGWWGYARPAPRSGRQHGNTSEGVMDQSRSDRASSMRDQQRVSTSISRQRTSLRLKRGTFTYASAGSTASVARQASMLSSKSEDNKGDTSSASGSNTRRGSVVNRRTGLKAALKISMRTPKPQSLPSYLVKVLLSLVQARLEAQEALRGLLYRKAGMHDGKMRKDILYADFVLRESARQASVMEIVCDCANARVVGEGHLGAKPLDGSDPVEQAEKIAQAEFLRDALYRFLPSATLDRVNRVVKRLQAGKFEGTLGRSTGNPSSMQSSSKPDPQRSSSARDGLVRVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLAAAMPGSFLTATDLQELARVYVVCLK 3222
MD+SDDEFFFESSRHLEDDGRSDATAGRVQAGLQELEGMELDEDIALPLAPG+DALTHRVSVARLQHVSNLAWCLGSWLPHLASLAVLLIRLEHSKNGRGTDE+NGLSSPHVHIRKLCGPGAYGGGASDYADGDTASITTSGPRAASTAHETPSTLGSDDSFAAGKRDRIGTKAEKEFT+LFE WLNSTTTVLRAAIFGDDTVSDK SGSSNGRRSGAST NATPLFAGNKQGGLSNKYAGEPHLKDPLDSRYLRQAFSSLAHLYDSLSQALGGSWEGDMVLSPGLRALEK LVKEAQALHVRSEMAALATEAKGLMDVDPWLAPEPPHPPGGTRLPHLFGALAHERMINLVELLPRAEWSAAEITHGLGDAVQCLLSCVTALGTRAYEASRMDHSNGAPLAL GGATTTGGHGEEGLSADHQLLCQIGNCLQLETV+LP+LWDTAVDLFDASRAGVVSDRKRTQKVQEKVMNKYLKHKYRELKMYVKNGWWGYARPAPRSGRQHGNTSEGVMD SRSDRASSMRDQQRVSTSISRQRTSLRLKRGTFTYASAGSTASVARQASMLSS+SEDNKGDTSSA GSNTRRGSVVNRRTGLKAAL ISMRTPKPQSLPSYLVKVLLSLVQARLEAQEALRGLLYRKAGMHDGKMRKDILYADFVLRESARQ VMEIVCDCANARVVGEGHLGAKPLDGSDPVEQAEKIAQAEFLRDALYRFLPSATLDRVNRVVKRLQAGKFEGTLGRSTGNPSSM SSSK DPQRSSSARDGLVRV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLAAAMPGSFLTATDLQELARVYVVCLK
Sbjct: 1 MDMSDDEFFFESSRHLEDDGRSDATAGRVQAGLQELEGMELDEDIALPLAPGVDALTHRVSVARLQHVSNLAWCLGSWLPHLASLAVLLIRLEHSKNGRGTDEDNGLSSPHVHIRKLCGPGAYGGGASDYADGDTASITTSGPRAASTAHETPSTLGSDDSFAAGKRDRIGTKAEKEFTSLFEGWLNSTTTVLRAAIFGDDTVSDKASGSSNGRRSGASTANATPLFAGNKQGGLSNKYAGEPHLKDPLDSRYLRQAFSSLAHLYDSLSQALGGSWEGDMVLSPGLRALEK--------LVKEAQALHVRSEMAALATEAKGLMDVDPWLAPEPPHPPGGTRLPHLFGALAHERMINLVELLPRAEWSAAEITHGLGDAVQCLLSCVTALGTRAYEASRMDHSNGAPLALGGGATTTGGHGEEGLSADHQLLCQIGNCLQLETVVLPELWDTAVDLFDASRAGVVSDRKRTQKVQEKVMNKYLKHKYRELKMYVKNGWWGYARPAPRSGRQHGNTSEGVMDPSRSDRASSMRDQQRVSTSISRQRTSLRLKRGTFTYASAGSTASVARQASMLSSRSEDNKGDTSSAHGSNTRRGSVVNRRTGLKAALNISMRTPKPQSLPSYLVKVLLSLVQARLEAQEALRGLLYRKAGMHDGKMRKDILYADFVLRESARQ--VMEIVCDCANARVVGEGHLGAKPLDGSDPVEQAEKIAQAEFLRDALYRFLPSATLDRVNRVVKRLQAGKFEGTLGRSTGNPSSMPSSSKTDPQRSSSARDGLVRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLAAAMPGSFLTATDLQELARVYVVCLK 835
BLAST of mRNA_Ecto-sp13_S_contig1662.4745.1 vs. uniprot
Match: A0A836CLG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG0_9STRA) HSP 1 Score: 311 bits (796), Expect = 3.420e-84 Identity = 317/1055 (30.05%), Postives = 435/1055 (41.23%), Query Frame = 1
Query: 4 LRQVRAAQHLLSEKGSILDIPREMSACMTDGRYMELVKLYRKAHTTYS----------------------SSILGKVRVEAEAVGQQACIRLVEILRSPDVSLEEQVDAVGHLQDLQYDGD-EPLQACFDYQKGNFLDNASQCREAMEALLVDAF--AYRRARGRIGRNSDAQQLNTRNHTQDGSSSTIRSDARRVSSAISPARSLASKPGS-------------TSEDLTDSEA-SSRGLCDFSPATRNGGGGRFFDFHEGDVLLAMDISDDEFFFESSRHLEDDGRSDATAGRVQAGLQELEGMELDE--------DIALPLAPGMDALTHRVSVARLQHVSNLAWCLGSWLPHLASLAVLLIRLEHSKNGRGTDENNGLSSPHVHIRKLCGPGAYGGGASDYADGDTASITTSGPRAASTAHETPSTLGSDDSFAAGKRDRIGTKAEKEFTNLFESWLNSTTTVLRAAIFGDDTVSDKTSGSSNGRRSGASTVNATP--LFAGNKQGGLSNKYAGEPHLKDPLDSRYLRQAFSSLAHLYDSLSQALGGSW-EGDMVLSPGLRALEKACLLARLSLVKEAQALHVRSEMAALATEAKGLMDVDPWLAPEPPHPPGGTRLPHLFGALAHERMINLVELLPRAEWSAAEITHGLGDAVQCLLSCVTALGTRAYEASRMDHSNGAPLALSGGATTTGGHG---------------------EEGLSADHQLLCQIGNCLQLETVILPDLWDTAVDLFDASRAGVVSDRKRTQKVQE--------KVMNKYLKHKYRELKMYVKNGWWGYARPAPRSGRQHGNTSEGVMDQSRSDRASSMRDQQRVSTSISRQRTSLRLKRGTFTYASAGSTASVARQASMLSSKSEDNKGDTSSASGSNTRRGSVVNRRTGLKAALKISMRTPKPQSLPSYLVKVLLSLVQARLEAQEALRGLLYRKAGMH-DGKMRKDILYADFVLRESARQASVMEIVCDCANARVVGEGHLGAKPLDGSDPVEQAEKIAQAEFLRDALYRFLPSATLDRVNRVVKRLQAGKFE 2928
+RQVRAAQHLL E+G++LD P +M A + +GR+ +LV LY+ A + SSI +V +A + AC L+++LRSPD +L Q A+ HL+ L + G +PL AC D Q +FL R A A L+ A+ A RG + D TD+E SS ++R GG FDF D+ D SD D+ A +DALTHR+S+ARL+H++NLA CLGSWLPHLA L+ LIR + ++ H R YG G A T+ E+ LF WL ++ +LR A+FG+ +A L++ L++ +A E HL++ L YLR+A +LA ++ +L +A + EG +L GL ALE +++AQAL V +E+ LA EA L + W GGT+LP F ALA R+ + ELLP WS A T GL AV L C+ AL T A E +D S A LS E LSA H LLCQ+GNCL + +LP++W A +LF A + DRK +Q K+ YL+ ++L + GWWG +P TS + + +T++ RQR +L +R T S +++K S + +LP YLVKVL LVQARLEA+EAL L+YR+A DG+ R +ILY+DFVLR+ ARQ VMEIVCDC NARV G G LG PLDG+D E A K+A+ EFLR+ L+R+L SAT+ RV+R V R+Q G +
Sbjct: 629 MRQVRAAQHLLRERGALLDAPADMRAALREGRHRDLVALYKAALSAAGPAAVXXXXXXXXXXXXXXXXXXSSIAQQVVEDARGIAAAACDALLDVLRSPDAALAAQEAAIEHLRALDHRGAADPLAACLDAQTDHFLRALRDMRAAFTAALLAAYTDAADTHRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDSDGTDTEDFSSAPATPVRRSSRASIGGIVFDFSAPDLRF-FDESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAAVDVEDGPADDVDALTHRISLARLEHITNLAQCLGSWLPHLAVLSAKLIRADATR-------------AHAVQR-------YGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPP----ATETERRLAGLFREWLENSAQILRRAMFGEPAAGGGDGXXXXXXXXXXXXADAYDGLLYSPTSHPALAHAHAHERHLREELRGEYLRRALPALAAMHGALERARADAVREGARILRAGLAALEAT--------LRDAQALCVGNELGDLAREALALQGAETWQQGGAAEGGGGTQLPRRFLALAAARLRGVAELLPAPRWSGATATEGLSMAVFAFLECLRALATEASEGDGLDVSASAQPNLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRLSATHLLLCQLGNCLLVSGAVLPEVWALAQELFGADADALRVDRKAAMDLQXXXXXXXXGKIQAMYLQRVRKDLIKCINAGWWGAKKPLA--------TSATIAXXXXXXXTAP------YATAVERQRAALAAQRDGRTLTRRAXXXXXXXXXXXNSPPKDESKSR---------------------------SRLAGEALTLPGYLVKVLGGLVQARLEAREALGALIYRRASRAPDGRERPEILYSDFVLRDRARQ--VMEIVCDCVNARVGGTGQLGPVPLDGADATETAAKLAELEFLRNTLWRYLSSATVARVSRCVARVQKGSAD 1607
BLAST of mRNA_Ecto-sp13_S_contig1662.4745.1 vs. uniprot
Match: D8LBG1_ECTSI (Exocyst complex component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBG1_ECTSI) HSP 1 Score: 288 bits (738), Expect = 1.020e-80 Identity = 147/158 (93.04%), Postives = 151/158 (95.57%), Query Frame = 1
Query: 1 DLRQVRAAQHLLSEKGSILDIPREMSACMTDGRYMELVKLYRKAHTTYSSSILGKVRVEAEAVGQQACIRLVEILRSPDVSLEEQVDAVGHLQDLQYDGDEPLQACFDYQKGNFLDNASQCREAMEALLVDAFAYRRARGRIGRNSDAQQLNTRNHTQ 474
+++QVRAAQHLLSEKGSILDIPREMSACM DGRYMELVKLYRKAHTTYSSSIL KVRVEAEAVGQQACIRLVEILRSPDVSLE+QVDAVGHLQDLQYDGDEPLQACFDYQKGNFLDNASQCREAMEALLVDAFAYRRARGRIGR SDAQQ NTR Q
Sbjct: 531 NIKQVRAAQHLLSEKGSILDIPREMSACMADGRYMELVKLYRKAHTTYSSSILSKVRVEAEAVGQQACIRLVEILRSPDVSLEQQVDAVGHLQDLQYDGDEPLQACFDYQKGNFLDNASQCREAMEALLVDAFAYRRARGRIGRKSDAQQQNTRRQLQ 688 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1662.4745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1662.4745.1 >prot_Ecto-sp13_S_contig1662.4745.1 ID=prot_Ecto-sp13_S_contig1662.4745.1|Name=mRNA_Ecto-sp13_S_contig1662.4745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1075bp DLRQVRAAQHLLSEKGSILDIPREMSACMTDGRYMELVKLYRKAHTTYSSback to top mRNA from alignment at Ecto-sp13_S_contig1662:3228..15632- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1662.4745.1 ID=mRNA_Ecto-sp13_S_contig1662.4745.1|Name=mRNA_Ecto-sp13_S_contig1662.4745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=12405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1662:3228..15632- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1662:3228..15632- >mRNA_Ecto-sp13_S_contig1662.4745.1 ID=mRNA_Ecto-sp13_S_contig1662.4745.1|Name=mRNA_Ecto-sp13_S_contig1662.4745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1662:3228..15632- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |