mRNA_Ecto-sp13_S_contig16611.4744.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16611.4744.1
Unique NamemRNA_Ecto-sp13_S_contig16611.4744.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16611.4744.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.590e-9
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 2 
Query:    2 VGAIPGSAHRMMRGTFTFFFQNAYGV 79
            VGAIPGSAHRMMRGTFTFFFQNAYGV
Sbjct: 2361 VGAIPGSAHRMMRGTFTFFFQNAYGV 2386
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16611.4744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTA2_9PHAE5.590e-9100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16611contigEcto-sp13_S_contig16611:1594..1756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462871.9868686-CDS-Ecto-sp13_S_contig16611:1594..16711681462871.9868686-CDS-Ecto-sp13_S_contig16611:1594..1671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16611 1595..1671 -
1681462871.9960437-CDS-Ecto-sp13_S_contig16611:1680..17561681462871.9960437-CDS-Ecto-sp13_S_contig16611:1680..1756Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16611 1681..1756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16611.4744.1prot_Ecto-sp13_S_contig16611.4744.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16611 1595..1756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16611.4744.1

>prot_Ecto-sp13_S_contig16611.4744.1 ID=prot_Ecto-sp13_S_contig16611.4744.1|Name=mRNA_Ecto-sp13_S_contig16611.4744.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
GRCHTRFCPSDDARHLYILLSKCLRCLPTCDTDIAGSMTCALVGARPTEA
Q
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mRNA from alignment at Ecto-sp13_S_contig16611:1594..1756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16611.4744.1 ID=mRNA_Ecto-sp13_S_contig16611.4744.1|Name=mRNA_Ecto-sp13_S_contig16611.4744.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=163bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16611:1594..1756- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGGTGCCATACCCGGTTCTGCCCATCGGATGATGCGCGGCACCTTTA
CATTCTTCTTTCAAAATGCCTACGGTGTAGAAAAGGTTTGCCGACCTGCG
ACACCGACATTGCCGGTTCTATGACGTGCGCTTTGGTGGGGGCGCGCCCC
ACCGAAGCTCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16611:1594..1756-

>mRNA_Ecto-sp13_S_contig16611.4744.1 ID=mRNA_Ecto-sp13_S_contig16611.4744.1|Name=mRNA_Ecto-sp13_S_contig16611.4744.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16611:1594..1756- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGGTGCCATACCCGGTTCTGCCCATCGGATGATGCGCGGCACCTTTA
CATTCTTCTTTCAAAATGCCTACGGTGTTTGCCGACCTGCGACACCGACA
TTGCCGGTTCTATGACGTGCGCTTTGGTGGGGGCGCGCCCCACCGAAGCT
CAG
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