mRNA_Ecto-sp13_S_contig1661.4743.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1661.4743.1
Unique NamemRNA_Ecto-sp13_S_contig1661.4743.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1661.4743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1661contigEcto-sp13_S_contig1661:14203..14950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size748
Hectar predicted targeting categoryother localisation
Exons1
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462871.7895033-UTR-Ecto-sp13_S_contig1661:14202..144331681462871.7895033-UTR-Ecto-sp13_S_contig1661:14202..14433Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1661 14203..14433 +
1681462871.8062387-UTR-Ecto-sp13_S_contig1661:14841..149501681462871.8062387-UTR-Ecto-sp13_S_contig1661:14841..14950Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1661 14842..14950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462871.7981381-CDS-Ecto-sp13_S_contig1661:14433..148411681462871.7981381-CDS-Ecto-sp13_S_contig1661:14433..14841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1661 14434..14841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1661.4743.1prot_Ecto-sp13_S_contig1661.4743.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1661 14434..14841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1661.4743.1

>prot_Ecto-sp13_S_contig1661.4743.1 ID=prot_Ecto-sp13_S_contig1661.4743.1|Name=mRNA_Ecto-sp13_S_contig1661.4743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
MVSFLCSVLQPQPRVLNLVSKMSLRNGVLQPPQEHCPLGPRGHRNGYLGR
VSNPALENLLPCATPSHAVMAAPSFENRRPKGMVSVAVFDLGGTVPERSG
GFRYGSTLRTQLVLSTEPACTPQIATYVAYGCPQR*
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mRNA from alignment at Ecto-sp13_S_contig1661:14203..14950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1661.4743.1 ID=mRNA_Ecto-sp13_S_contig1661.4743.1|Name=mRNA_Ecto-sp13_S_contig1661.4743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=748bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1661:14203..14950+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTATCGTTGCCATTGGTCGATGTGTTGCTGTTGTCGTTGCCTTGGTGTC
TGTTCTTTCGGTCGAGGAGATCGGTAGCTAAGCGTTCAAGGCTCGAACAC
CGTGCCTCGTCAATGTACACCCGGCGACGCACACATCTCTCGATCGTGTG
TCCAACGGCGCACTTCGACAGAAACGGGTTTGGCGCTTCGAACGTCAAAA
GAAGTGCGTGAAACCGCGTCACCTCCATGGCATGGTCAGTTTCCTGTGCT
CAGTACTTCAACCGCAGCCACGAGTGTTGAACCTTGTGTCGAAAATGTCG
CTGCGAAATGGCGTTCTACAACCACCGCAAGAGCATTGTCCCCTAGGCCC
TCGAGGTCATCGCAATGGATACCTCGGGAGGGTTTCAAACCCTGCCCTTG
AGAACCTTCTACCGTGTGCAACACCGTCTCATGCCGTAATGGCGGCACCG
AGCTTCGAAAACCGACGTCCCAAAGGTATGGTGTCTGTTGCAGTCTTCGA
CCTTGGAGGCACCGTGCCTGAGAGGTCAGGGGGCTTTCGATATGGAAGCA
CACTACGTACCCAGCTGGTGCTTTCAACCGAACCCGCTTGCACCCCGCAG
ATAGCTACCTACGTGGCGTATGGGTGTCCACAACGCTGACTGAGGGAAGC
ACGTGGTTGTCTTTCCATTCGACTTACGTTAACGTGTCTCCAAGTTGTTG
AATAGTGTTGTTGATTTACTCTCTCTCTTATCGTTGAAGAGTCTGACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1661:14203..14950+

>mRNA_Ecto-sp13_S_contig1661.4743.1 ID=mRNA_Ecto-sp13_S_contig1661.4743.1|Name=mRNA_Ecto-sp13_S_contig1661.4743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1661:14203..14950+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCAGTTTCCTGTGCTCAGTACTTCAACCGCAGCCACGAGTGTTGAA
CCTTGTGTCGAAAATGTCGCTGCGAAATGGCGTTCTACAACCACCGCAAG
AGCATTGTCCCCTAGGCCCTCGAGGTCATCGCAATGGATACCTCGGGAGG
GTTTCAAACCCTGCCCTTGAGAACCTTCTACCGTGTGCAACACCGTCTCA
TGCCGTAATGGCGGCACCGAGCTTCGAAAACCGACGTCCCAAAGGTATGG
TGTCTGTTGCAGTCTTCGACCTTGGAGGCACCGTGCCTGAGAGGTCAGGG
GGCTTTCGATATGGAAGCACACTACGTACCCAGCTGGTGCTTTCAACCGA
ACCCGCTTGCACCCCGCAGATAGCTACCTACGTGGCGTATGGGTGTCCAC
AACGCTGA
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