prot_Ecto-sp13_S_contig16605.4739.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16605.4739.1
Unique Nameprot_Ecto-sp13_S_contig16605.4739.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length60
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16605.4739.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..57
e-value: 4.0E-16
score: 60.9
IPR025875Leucine rich repeat 4PFAMPF12799LRR_4coord: 13..46
e-value: 1.6E-7
score: 31.5
NoneNo IPR availablePANTHERPTHR46662:SF12RECEPTOR-LIKE PROTEIN 4coord: 2..52
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 2..52
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16605contigEcto-sp13_S_contig16605:2858..3163 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16605.4739.1mRNA_Ecto-sp13_S_contig16605.4739.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16605 2858..3163 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16605.4739.1 ID=prot_Ecto-sp13_S_contig16605.4739.1|Name=mRNA_Ecto-sp13_S_contig16605.4739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
AGSIPASLGQLRNLEKLDLSDNRLDGGIPMSLGQLDKLERLYLNQNMLSG
KCMCHARAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR025875Leu-rich_rpt_4