mRNA_Ecto-sp13_S_contig16605.4739.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16605.4739.1
Unique NamemRNA_Ecto-sp13_S_contig16605.4739.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16605.4739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16605contigEcto-sp13_S_contig16605:2858..3163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size180
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462871.596526-CDS-Ecto-sp13_S_contig16605:2857..29331681462871.596526-CDS-Ecto-sp13_S_contig16605:2857..2933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16605 2858..2933 +
1681462871.6100385-CDS-Ecto-sp13_S_contig16605:3059..31631681462871.6100385-CDS-Ecto-sp13_S_contig16605:3059..3163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16605 3060..3163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16605.4739.1prot_Ecto-sp13_S_contig16605.4739.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16605 2858..3163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16605.4739.1

>prot_Ecto-sp13_S_contig16605.4739.1 ID=prot_Ecto-sp13_S_contig16605.4739.1|Name=mRNA_Ecto-sp13_S_contig16605.4739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
AGSIPASLGQLRNLEKLDLSDNRLDGGIPMSLGQLDKLERLYLNQNMLSG
KCMCHARAT*
back to top

mRNA from alignment at Ecto-sp13_S_contig16605:2858..3163+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16605.4739.1 ID=mRNA_Ecto-sp13_S_contig16605.4739.1|Name=mRNA_Ecto-sp13_S_contig16605.4739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16605:2858..3163+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGCTCCATCCCCGCATCGCTAGGACAGCTCCGCAACCTCGAAAAACT
CGACCTCAGTGACAACCGGCTCGACGGTAGGTCATGACGTTTGAGATGTC
CGAGAACAGAACGTCAACCACAACGAACGCCACTCACGTTTTGGCGAGAG
AGGCATACGGAAAACGGTGCCCTTTGCATTCACCTACTTGTATACCATGC
AGGCGGGATCCCGATGTCACTAGGACAGCTTGACAAGCTGGAAAGGCTGT
ACCTCAACCAGAACATGCTGAGCGGTAAGTGTATGTGTCACGCGAGAGCG
ACTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16605:2858..3163+

>mRNA_Ecto-sp13_S_contig16605.4739.1 ID=mRNA_Ecto-sp13_S_contig16605.4739.1|Name=mRNA_Ecto-sp13_S_contig16605.4739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16605:2858..3163+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGCTCCATCCCCGCATCGCTAGGACAGCTCCGCAACCTCGAAAAACT
CGACCTCAGTGACAACCGGCTCGACGGCGGGATCCCGATGTCACTAGGAC
AGCTTGACAAGCTGGAAAGGCTGTACCTCAACCAGAACATGCTGAGCGGT
AAGTGTATGTGTCACGCGAGAGCGACTTGA
back to top