mRNA_Ecto-sp13_S_contig16602.4738.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16602.4738.1
Unique NamemRNA_Ecto-sp13_S_contig16602.4738.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16602.4738.1 vs. uniprot
Match: A0A6H5L3Q6_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q6_9PHAE)

HSP 1 Score: 399 bits (1026), Expect = 1.040e-128
Identity = 257/279 (92.11%), Postives = 263/279 (94.27%), Query Frame = 1 
Query:    1 MMSYLAVGDLLEDTITRSAQNQNGADDELSWLRRRLDSERRDPRARGKLALENVDGISSGGXXXXXXXXXXXXXXXRSVAKRAAPVDKENASAAAVAKPAESRANKVSPTGMSVLQLRRFLRAIGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQPRAAVECAGERRKADAMLAVAESMLNLDGSSTTSSAAGDATAPKKPLRESLSSANNEXXXXXXXXXXXXXXXXLQQQVPMTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTP 837
            MM+YLAVGDLLEDTITRSAQNQNGAD ELSWLRRRLDSERRDPRARGKLALENVDGISSGGXXXXXXXXXX     RSVAK+AAPVDKENASAAAVAKPA SRA+KV PTGMSVLQLRRFLR IGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQPRAAVECAGERRK DAMLAVAESMLNLDGS+TTSSAAGDAT PK+PLRESLSS    XXXXXXXXXXXXXXXX QQQVP+TPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTP
Sbjct:    1 MMNYLAVGDLLEDTITRSAQNQNGADGELSWLRRRLDSERRDPRARGKLALENVDGISSGGXXXXXXXXXXQTQP-RSVAKKAAPVDKENASAAAVAKPAGSRASKVPPTGMSVLQLRRFLRVIGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQPRAAVECAGERRKTDAMLAVAESMLNLDGSNTTSSAAGDATTPKRPLRESLSSXXXXXXXXXXXXXXXXXXXXXQQQVPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTP 278
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BLAST of mRNA_Ecto-sp13_S_contig16602.4738.1 vs. uniprot
Match: D8LQB0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB0_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.640e-37
Identity = 100/106 (94.34%), Postives = 102/106 (96.23%), Query Frame = 1 
Query:  523 MLAVAESMLNLDGSSTTSSAAGDATAPKKPLRESLSSANNEXXXXXXXXXXXXXXXXLQQQVP-MTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTP 837
            MLAVAESMLN DGSSTTSSAAGDATAPK+PLRESLSSANN XXXXXXXXXXXXXXXX QQQVP +TPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTP
Sbjct:    1 MLAVAESMLNPDGSSTTSSAAGDATAPKRPLRESLSSANNXXXXXXXXXXXXXXXXXXQQQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTP 106
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16602.4738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3Q6_9PHAE1.040e-12892.11SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQB0_ECTSI1.640e-3794.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16602contigEcto-sp13_S_contig16602:1..1844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size837
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-26_005470.1
Cds size837
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462871.5457337-CDS-Ecto-sp13_S_contig16602:0..3411681462871.5457337-CDS-Ecto-sp13_S_contig16602:0..341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16602 1..341 -
1681462871.556736-CDS-Ecto-sp13_S_contig16602:797..9751681462871.556736-CDS-Ecto-sp13_S_contig16602:797..975Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16602 798..975 -
1681462871.5665321-CDS-Ecto-sp13_S_contig16602:1526..18441681462871.5665321-CDS-Ecto-sp13_S_contig16602:1526..1844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16602 1527..1844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16602.4738.1prot_Ecto-sp13_S_contig16602.4738.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16602 1..1844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16602.4738.1

>prot_Ecto-sp13_S_contig16602.4738.1 ID=prot_Ecto-sp13_S_contig16602.4738.1|Name=mRNA_Ecto-sp13_S_contig16602.4738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=279bp
MMSYLAVGDLLEDTITRSAQNQNGADDELSWLRRRLDSERRDPRARGKLA
LENVDGISSGGGSGSSSSSSSSQPQPRSVAKRAAPVDKENASAAAVAKPA
ESRANKVSPTGMSVLQLRRFLRAIGQPTSGLKPVLSARLEKAVASGAVKT
FVDTARAQPRAAVECAGERRKADAMLAVAESMLNLDGSSTTSSAAGDATA
PKKPLRESLSSANNERSSRSSAGDSVDKSQPLQQQVPMTPATSKLSGQEQ
DAVVAKIRSAAKRSASPEKKLPYQDDDTP
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mRNA from alignment at Ecto-sp13_S_contig16602:1..1844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16602.4738.1 ID=mRNA_Ecto-sp13_S_contig16602.4738.1|Name=mRNA_Ecto-sp13_S_contig16602.4738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1844bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16602:1..1844- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAGTTACCTCGCCGTTGGAGATCTCCTGGAGGACACCATCACGCG
CAGTGCTCAGAATCAGAACGGTGCGGACGACGAGCTCAGCTGGCTGCGCA
GGCGGCTCGACAGCGAACGGCGTGACCCCCGCGCCCGAGGGAAACTCGCG
CTCGAGAACGTCGACGGTATCAGCAGCGGCGGCGGCAGCGGCAGCAGCAG
CAGCAGCAGCAGCAGCCAGCCGCAGCCCCGCTCGGTGGCGAAGAGAGCGG
CGCCCGTGGACAAGGAGAATGCTTCTGCTGCTGCTGTGGCGAAACCCGCT
GAGTCTCGCGCTAACAAGGTGCGGGTTCTGTTCCTTGATCTCCACTCGAC
GAGTCCGTGTTTGGCGCAAAAAAAAAATAAAGATATCGTCCCAGCCAGAG
GTAGTTGGCGGTCTGCCCCGATATGAACGATAGATCGCACTACTCATCGA
CCGTGCCTCACCTATGGTAGTGGTATGGGTAGACAGGCGACGGAAAAACT
AAGAGTCCTGCCATGGTATGTATTCTCTCTACACCACGGCAGTACTCACG
GCTCCTTTCTCGGGGTATTTTTTGGCGCGAATTTCGGGTTGGCCTTGAGA
ACATTACAATAGAGAGTCTCTATCCCGACCTCCTCCCCCAGACAACGTGC
CGAAAAGGGGGGCTTATTTCCTGCGCTGCTGTAGTAGGCACTTCTATACT
CGAGCCTTCCGTACCGCGTTCGCAGCGGTACCAGCAGCACATAACTTGGC
CCATAACAGCAAGATGCACGCGCTTGGGCGAAAACAGCCGCAAAGCCATT
TTTGTTGGTGAAGTCGATGTCCGGATGGACCATAATCATCTCGCCCCCTC
CCCTACATTCCTCTGGCAGGTGTCTCCCACGGGCATGAGCGTACTTCAGC
TACGGCGCTTCCTGCGGGCCATCGGGCAGCCTACATCGGGCCTGAAGCCG
GTCCTCTCCGCTCGCCTGGAGAAGGCCGTGGCCTCGGGCGCCGTGAAGAC
GTTCGTCGACACCGCAAGGGCGCAGCCGCGCGCAGCGGTTGAGTGCGGTG
AGCGAGCGCATGTATTTCCGTGTGCGCCTTTACTTGTGGTTTGTGTATTT
TGGTATGTAGCATTGACGGCGAACTAGGTGCCGAGTGATCCAGCACATCA
AGTCTCTTTAACAAGCACTGCGGGACGCAGATTCGTGTTTGTGTCCGCCG
GCTCCCCCGTCAAGGAGGGGTGTGCGTGCGTGTGTGGCACGGCCAAAGGT
ACTGCTGTTGCTGGTGGGTGCTACTTAATTACTAAATGGCGAAACACTAG
CTTCTGCTGTTGCTACGAAAAACTGCACGGTAGCTTGCGATTTAAAACAA
GAATCAAGTACGTACGACCGACCCTTTACGCGTTGTTTTTGGAGGCACGA
GAACACAAGGTCATTTAGAGCTGTCTACGAAACATTCTGAAGGCTCACAA
CCTCCCCCTACCAACGCATCGCTCAACGATACCGGACGCGAACCTGCACT
CAGCTGGCGAGCGTCGTAAGGCCGATGCCATGCTGGCGGTGGCCGAGTCT
ATGCTCAACCTGGACGGCAGCAGCACCACTTCCTCCGCTGCCGGTGACGC
GACGGCGCCGAAGAAGCCGCTCCGCGAATCCCTGTCCAGCGCAAACAACG
AGCGTAGCTCCCGGTCTTCGGCCGGCGACAGCGTCGACAAGTCGCAGCCG
CTTCAGCAGCAGGTGCCGATGACACCGGCGACCTCCAAGCTGTCGGGGCA
GGAGCAGGACGCGGTCGTTGCGAAGATTCGGTCTGCCGCGAAGAGGTCTG
CGTCTCCGGAGAAGAAGCTTCCGTACCAGGACGACGACACGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16602:1..1844-

>mRNA_Ecto-sp13_S_contig16602.4738.1 ID=mRNA_Ecto-sp13_S_contig16602.4738.1|Name=mRNA_Ecto-sp13_S_contig16602.4738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16602:1..1844- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAGTTACCTCGCCGTTGGAGATCTCCTGGAGGACACCATCACGCG
CAGTGCTCAGAATCAGAACGGTGCGGACGACGAGCTCAGCTGGCTGCGCA
GGCGGCTCGACAGCGAACGGCGTGACCCCCGCGCCCGAGGGAAACTCGCG
CTCGAGAACGTCGACGGTATCAGCAGCGGCGGCGGCAGCGGCAGCAGCAG
CAGCAGCAGCAGCAGCCAGCCGCAGCCCCGCTCGGTGGCGAAGAGAGCGG
CGCCCGTGGACAAGGAGAATGCTTCTGCTGCTGCTGTGGCGAAACCCGCT
GAGTCTCGCGCTAACAAGGTGTCTCCCACGGGCATGAGCGTACTTCAGCT
ACGGCGCTTCCTGCGGGCCATCGGGCAGCCTACATCGGGCCTGAAGCCGG
TCCTCTCCGCTCGCCTGGAGAAGGCCGTGGCCTCGGGCGCCGTGAAGACG
TTCGTCGACACCGCAAGGGCGCAGCCGCGCGCAGCGGTTGAGTGCGCTGG
CGAGCGTCGTAAGGCCGATGCCATGCTGGCGGTGGCCGAGTCTATGCTCA
ACCTGGACGGCAGCAGCACCACTTCCTCCGCTGCCGGTGACGCGACGGCG
CCGAAGAAGCCGCTCCGCGAATCCCTGTCCAGCGCAAACAACGAGCGTAG
CTCCCGGTCTTCGGCCGGCGACAGCGTCGACAAGTCGCAGCCGCTTCAGC
AGCAGGTGCCGATGACACCGGCGACCTCCAAGCTGTCGGGGCAGGAGCAG
GACGCGGTCGTTGCGAAGATTCGGTCTGCCGCGAAGAGGTCTGCGTCTCC
GGAGAAGAAGCTTCCGTACCAGGACGACGACACGCCC
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