mRNA_Ecto-sp13_S_contig16600.4736.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig16600.4736.1
Unique Name	mRNA_Ecto-sp13_S_contig16600.4736.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig16600.4736.1 vs. uniprot
Match: A0A6H5L6G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6G4_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.140e-30
Identity = 208/275 (75.64%), Postives = 211/275 (76.73%), Query Frame = 1

Query:    1 SSCRRHRKGGLRRMAGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGHDAVMPDVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGKTSPGVIGRPSKTNKSAAADQSVAAAAGVNAAGIAVSATAAAAG-------SRERLLGDSSMPVSGFGGVVAKAGGVGRXXXXXXXXXXXXXXXXXXXXXX--EGWRRYVYPSGTVYEGDMVDDKREGDGVYIDKNS 798
            ++ RRHRKGGLRR+AGAGAXXXXXXXXXXXXXXX            XXXXXXXXXRGG DAVMPDVAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 KTSPGVIGRPSKTNKSAAADQ                              SRERLLGDSSMPVSGFGGVVAKAGGVGRXXXXXXXXXXXXXXXXXXXXXX  EGWRRYVYPSGTVYEGDMVDDKREGDGVYIDKNS
Sbjct:   14 AAARRHRKGGLRRVAGAGAXXXXXXXXXXXXXXXSCSASVSSGPTGXXXXXXXXXRGGRDAVMPDVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----------------KTSPGVIGRPSKTNKSAAADQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRERLLGDSSMPVSGFGGVVAKAGGVGRXXXXXXXXXXXXXXXXXXXXXXXXEGWRRYVYPSGTVYEGDMVDDKREGDGVYIDKNS 272

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BLAST of mRNA_Ecto-sp13_S_contig16600.4736.1 vs. uniprot
Match: D8LDQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ6_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 5.930e-30
Identity = 227/276 (82.25%), Postives = 232/276 (84.06%), Query Frame = 1

Query:    1 SSCRRHRKGGLRRMAGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--GGHDAVMPDVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGKTSPGVIGRPSKTNKSAAADQSVAAAAGVNAAGIAVSATAAAAG--------SRERLLGDSSMPVSGFGGVVAKAGGVGRXXXXXXXXXXXXXXXXXXXXXXEGWRRYVYPSGTVYEGDMVDDKREGDGVYIDKNS 798
            ++ RRHRKGGLRR+AGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   GG DAVMPDVA A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   KTSPGVIGRPSKTNKSAAADQS                              +RERLLGD+SMPVSGF GVV KAGGVGR  XXXXXXXXXXXXXXXXXXXXEGWRRYVYPSGTVYEGDMVDDKREGDGVYIDKNS
Sbjct:   81 AAARRHRKGGLRRVAGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRDAVMPDVAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTSPGVIGRPSKTNKSAAADQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARERLLGDASMPVSGFSGVVTKAGGVGRRGXXXXXXXXXXXXXXXXXXXXEGWRRYVYPSGTVYEGDMVDDKREGDGVYIDKNS 356

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig16600.4736.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig16600.4736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L6G4_9PHAE	1.140e-30	75.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LDQ6_ECTSI	5.930e-30	82.25	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig16600	contig	Ecto-sp13_S_contig16600:966..3334 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	131.7
Seed ortholog evalue	6.8e-28
Seed eggNOG ortholog	2880.D8LDQ6
Model size	1095
KEGG ko	ko:K03283
KEGG TC	1.A.33.1
KEGG Pathway	ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG Module	M00353,M00355
Hectar predicted targeting category	other localisation
Exons	3
EggNOG free text desc.	Translation initiation factor IF-2, N-terminal region
EggNOG OGs	COG4642@1,COG5253@1,KOG0229@2759,KOG0231@2759
Cds size	1095
COG Functional cat.	T
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462871.440658-CDS-Ecto-sp13_S_contig16600:965..1733	1681462871.440658-CDS-Ecto-sp13_S_contig16600:965..1733	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16600 966..1733 +
1681462871.4528916-CDS-Ecto-sp13_S_contig16600:2407..2574	1681462871.4528916-CDS-Ecto-sp13_S_contig16600:2407..2574	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16600 2408..2574 +
1681462871.46247-CDS-Ecto-sp13_S_contig16600:3174..3334	1681462871.46247-CDS-Ecto-sp13_S_contig16600:3174..3334	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16600 3175..3334 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig16600.4736.1	prot_Ecto-sp13_S_contig16600.4736.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig16600 966..3334 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig16600:966..3334+
coding sequence from alignment at Ecto-sp13_S_contig16600:966..3334+

protein sequence of mRNA_Ecto-sp13_S_contig16600.4736.1

>prot_Ecto-sp13_S_contig16600.4736.1 ID=prot_Ecto-sp13_S_contig16600.4736.1|Name=mRNA_Ecto-sp13_S_contig16600.4736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=365bp
SSCRRHRKGGLRRMAGAGATAGPGCIAGTGSITASSSASVSSGPTGGGAI
SGGGARGGHDAVMPDVAAAAAAAAAATAGAASSSTVDASASSPSRASNAA
AGTAAAAAAAAAAAAATSAAAAGSRSSSPSPAAAVAVGKTSPGVIGRPSK
TNKSAAADQSVAAAAGVNAAGIAVSATAAAAGSRERLLGDSSMPVSGFGG
VVAKAGGVGRRGGGGGMVTGVAAAAAAGGGGGEGWRRYVYPSGTVYEGDM
VDDKREGDGVYIDKNSNRYEGQWRNDRAEGYGIKVFAKGDKHEGYYSNDK
RNGFGTYYWANGDRYKGEWKDGMMHGKGTFMWSKGDMYEGHWRAGKMHGH
GVKKMGNGDVYEGMW

mRNA from alignment at Ecto-sp13_S_contig16600:966..3334+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig16600.4736.1 ID=mRNA_Ecto-sp13_S_contig16600.4736.1|Name=mRNA_Ecto-sp13_S_contig16600.4736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16600:966..3334+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCCTGCAGGAGGCACAGGAAAGGAGGCTTGCGCCGCATGGCTGGAGC
CGGAGCGACGGCGGGTCCTGGGTGTATCGCTGGAACCGGCAGCATCACGG
CTTCTTCTTCCGCTTCCGTCAGCAGCGGCCCCACCGGTGGCGGCGCGATC
AGCGGCGGCGGCGCGCGCGGCGGCCATGACGCGGTGATGCCCGATGTTGC
TGCTGCTGCCGCCGCCGCCGCCGCCGCCACCGCAGGTGCGGCCTCCTCGT
CGACGGTGGATGCTTCAGCGTCGTCGCCTTCTCGTGCTTCGAACGCAGCC
GCTGGAACGGCGGCGGCCGCCGCCGCCGCTGCCGCTGCCGCCGCTGCTAC
GTCTGCGGCGGCGGCCGGCTCTCGCTCTTCTTCGCCGTCGCCGGCGGCGG
CGGTGGCAGTGGGGAAGACGTCCCCGGGTGTGATCGGCCGCCCCTCGAAG
ACCAACAAATCCGCCGCCGCTGACCAATCAGTGGCGGCAGCCGCCGGCGT
TAATGCAGCGGGGATTGCGGTGAGCGCGACGGCGGCAGCAGCGGGATCGC
GAGAACGCCTGCTGGGCGATTCTTCGATGCCTGTCTCTGGGTTTGGTGGC
GTGGTCGCGAAGGCCGGCGGCGTGGGCAGGAGGGGGGGCGGGGGCGGGAT
GGTCACCGGGGTCGCGGCGGCGGCGGCGGCGGGCGGCGGCGGCGGAGAGG
GGTGGAGGCGGTACGTGTATCCGTCGGGTACGGTGTACGAGGGGGACATG
GTGGACGACAAGCGCGAGGTGTGTTCGGGAGTTAGCATCGATAACCGGCC
GACTCAAGTGTTGCCGTATCGTAGAGGTTCCTGTATGTAGCGCCTTTTTC
AAGAGCAACTACCGTATGGGCGAGCACGCACTCTAGTTGAGGTCGTTGTG
CGTGTCCGACTGGTCAGCATGGACTGCCTTTTCTAGTGAATTGACAAGAG
TTGGGGAGGGTGTTCCCGCTTGTCGTCCGTCTGTACCGCTACCCCGCCCG
GCGCGCTCTCGAGCCTTCTCCTAGGAATCCCCCCTTTTCTCTCACACGGG
GGTCAGCTCCCCCCCATAGATCTCGGGACGCGAATATGTTTATCGTTGAT
GCCCCCATCCATGTTCTCTCATACAAGCGCATCTTGCAAGTAGACCGCTT
GAGCGACTCTCTGGTGCAGACGGGTGCTGAAAGGTGCCATGGGAGGCAGC
AGGTGGTCCCCGTTAAAAAAGCCGCGCGAGTTTTGCAGCCGATCGCCCTG
TGTAAGGCCGGTGCAACCGCGTGACTTATCAGCTGGAATACTCGACAGGC
CTCGTACTCTGAATAGTGCCTGGCGCCCTCTTTGCGGCATACACCACAGG
GACCACCACCATGCCTACGCATACTCATGACTTTCGCCCCCCCCTCCCCC
CCCCCCCCGGACTACCGGACTCGCCTTAACCGTTGCGTGAAGGGTGACGG
TGTCTACATAGATAAGAACAGCAATCGTTACGAGGGTCAGTGGAGGAACG
ACCGCGCTGAGGGATACGGCATCAAGGTCTTCGCGAAGGGCGACAAGCAC
GAGGGTTACTACTCCAACGACAAACGTAACGGGTTCGGCACCTACTACTG
GGCCAACGGGTGTGTGTGTGTGTCTTTATTGTCAGCATCGACCGCGCTAA
ACGATGCGTGTGTGTGTGTGTGCTTGTTCGAGACCGGGATGGGGTTTTGG
TGTGAGAAGTGCGGCAACGGCTACATGCCGTGAGCTCACGCTTGGGAAGT
TCACGTGACGACTTAATTCAAACAAGTGTATCGCGCGCTATGGTGTGCGA
CCTCGTCCTTACCCCACCCCATCTACGTAGTGCTATTGGAGATTGACGGC
GGCTACAAAATGCCACGCAGGAAACGGGTACAGCTTTGCCGAACGTCACA
TGTCTTTCCCATGGAAGGAACATATGAGACGTAAACTTGCATACAGAGCA
CACAATTGTTACTTGTTGCAGGTGTGTATTCTATCTCGTGTACAACGTGT
ACTAATAGAAACGGCGGTGCTCCGACTTTTAAGAGAAGACGTGGTGAAAG
ACCAAATGACTGCGTATGAAGAAGAGCAGGGCCATCATTCCCCCCGGACC
GAGGACGCGCTGTCAATGGCTCAACGGCTGGGGCATGCGAAACATGAGTA
CGCCCCCCCCCCCGCCCCCGCCCCCAACTCAAAACGGACCCACCCCCTCT
CGAAAATAGGGACCGGTACAAGGGAGAGTGGAAGGACGGTATGATGCACG
GCAAGGGCACCTTCATGTGGAGCAAGGGCGACATGTACGAGGGCCACTGG
AGGGCCGGCAAGATGCACGGACATGGGGTCAAGAAGATGGGGAACGGTGA
CGTTTACGAAGGTATGTGG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16600:966..3334+

>mRNA_Ecto-sp13_S_contig16600.4736.1 ID=mRNA_Ecto-sp13_S_contig16600.4736.1|Name=mRNA_Ecto-sp13_S_contig16600.4736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16600:966..3334+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCCTGCAGGAGGCACAGGAAAGGAGGCTTGCGCCGCATGGCTGGAGC
CGGAGCGACGGCGGGTCCTGGGTGTATCGCTGGAACCGGCAGCATCACGG
CTTCTTCTTCCGCTTCCGTCAGCAGCGGCCCCACCGGTGGCGGCGCGATC
AGCGGCGGCGGCGCGCGCGGCGGCCATGACGCGGTGATGCCCGATGTTGC
TGCTGCTGCCGCCGCCGCCGCCGCCGCCACCGCAGGTGCGGCCTCCTCGT
CGACGGTGGATGCTTCAGCGTCGTCGCCTTCTCGTGCTTCGAACGCAGCC
GCTGGAACGGCGGCGGCCGCCGCCGCCGCTGCCGCTGCCGCCGCTGCTAC
GTCTGCGGCGGCGGCCGGCTCTCGCTCTTCTTCGCCGTCGCCGGCGGCGG
CGGTGGCAGTGGGGAAGACGTCCCCGGGTGTGATCGGCCGCCCCTCGAAG
ACCAACAAATCCGCCGCCGCTGACCAATCAGTGGCGGCAGCCGCCGGCGT
TAATGCAGCGGGGATTGCGGTGAGCGCGACGGCGGCAGCAGCGGGATCGC
GAGAACGCCTGCTGGGCGATTCTTCGATGCCTGTCTCTGGGTTTGGTGGC
GTGGTCGCGAAGGCCGGCGGCGTGGGCAGGAGGGGGGGCGGGGGCGGGAT
GGTCACCGGGGTCGCGGCGGCGGCGGCGGCGGGCGGCGGCGGCGGAGAGG
GGTGGAGGCGGTACGTGTATCCGTCGGGTACGGTGTACGAGGGGGACATG
GTGGACGACAAGCGCGAGGGTGACGGTGTCTACATAGATAAGAACAGCAA
TCGTTACGAGGGTCAGTGGAGGAACGACCGCGCTGAGGGATACGGCATCA
AGGTCTTCGCGAAGGGCGACAAGCACGAGGGTTACTACTCCAACGACAAA
CGTAACGGGTTCGGCACCTACTACTGGGCCAACGGGGACCGGTACAAGGG
AGAGTGGAAGGACGGTATGATGCACGGCAAGGGCACCTTCATGTGGAGCA
AGGGCGACATGTACGAGGGCCACTGGAGGGCCGGCAAGATGCACGGACAT
GGGGTCAAGAAGATGGGGAACGGTGACGTTTACGAAGGTATGTGG