mRNA_Ecto-sp13_S_contig16596.4732.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16596.4732.1
Unique NamemRNA_Ecto-sp13_S_contig16596.4732.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16596.4732.1 vs. uniprot
Match: A0A6H5JCV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV2_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 2.340e-67
Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 1 
Query:    1 MLWVTEMDLGGHGGIQRTLLQKRVGDFDGREGQDAIPNWVMACVLHGEFHTKEQDKMAFFLAPWIPPARGGGGGLSLPSTPHRQPQGKRGXXXXXXXXXDARKPASLGXXXXXXXXXXXXXXXXXXXXXXXXVGAGGVPSNHMSQRFTAPVQMLVSKV 474
            MLWVTEMDLGGHGGIQRTLLQKRVG+FDGREGQDAIPNWVMACVLHGEFHTKEQDKMAFFLAPWIPP RGGGGGLSLPSTPHRQPQGKRGXXXXXXXXXDARKPASL XXXXXXXXXXXXXXXXXXXXXXXXVGAGGVPSN MSQRFTAPVQMLVSKV
Sbjct:  991 MLWVTEMDLGGHGGIQRTLLQKRVGEFDGREGQDAIPNWVMACVLHGEFHTKEQDKMAFFLAPWIPPERGGGGGLSLPSTPHRQPQGKRGXXXXXXXXXDARKPASLXXXXXXXXXXXXXXXXXXXXXXXXXVGAGGVPSNQMSQRFTAPVQMLVSKV 1148
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BLAST of mRNA_Ecto-sp13_S_contig16596.4732.1 vs. uniprot
Match: A0A6H5JF83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF83_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.150e-20
Identity = 53/66 (80.30%), Postives = 53/66 (80.30%), Query Frame = -2 
Query:  495 CGSSTRSPQSTSTKSSGVSREGRIITPPAASPLPS---PLXXXXXSVPSPPSGCTTVLSRCWWRSS 683
            CGSSTRSPQSTSTKSSGVSREGRIITPPAASP P    PL    X    PPSGCTTVLSRCWWRSS
Sbjct:   23 CGSSTRSPQSTSTKSSGVSREGRIITPPAASPPPXXXLPLPPVVXXXXXPPSGCTTVLSRCWWRSS 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16596.4732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCV2_9PHAE2.340e-6797.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF83_9PHAE1.150e-2080.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16596contigEcto-sp13_S_contig16596:1543..3781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1209
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionProtein of unknown function DUF3337
Ec32 orthologEc-06_007550.1
Cds size789
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462871.1496506-CDS-Ecto-sp13_S_contig16596:1542..20131681462871.1496506-CDS-Ecto-sp13_S_contig16596:1542..2013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16596 1543..2013 +
1681462871.1625423-CDS-Ecto-sp13_S_contig16596:2606..28291681462871.1625423-CDS-Ecto-sp13_S_contig16596:2606..2829Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16596 2607..2829 +
1681462871.1747818-CDS-Ecto-sp13_S_contig16596:3266..33611681462871.1747818-CDS-Ecto-sp13_S_contig16596:3266..3361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16596 3267..3361 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462871.1852005-UTR-Ecto-sp13_S_contig16596:3361..37811681462871.1852005-UTR-Ecto-sp13_S_contig16596:3361..3781Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16596 3362..3781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16596.4732.1prot_Ecto-sp13_S_contig16596.4732.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16596 1543..3361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16596.4732.1

>prot_Ecto-sp13_S_contig16596.4732.1 ID=prot_Ecto-sp13_S_contig16596.4732.1|Name=mRNA_Ecto-sp13_S_contig16596.4732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=263bp
MLWVTEMDLGGHGGIQRTLLQKRVGDFDGREGQDAIPNWVMACVLHGEFH
TKEQDKMAFFLAPWIPPARGGGGGLSLPSTPHRQPQGKRGGGGSSGAAGD
ARKPASLGGSRGSGAAGTAAAAAGGKAGGGAAVGAGGVPSNHMSQRFTAP
VQMLVSKVMAYVLSHEDLHQHLESTVVHPEGGDGTDGSTGGNGDGSGDAA
GGVMMRPSRETPEDLVEVLCGERVLEPHLYIGAVQKYIWEATGSGPTLFL
HYRSRRRPPGGP*
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mRNA from alignment at Ecto-sp13_S_contig16596:1543..3781+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16596.4732.1 ID=mRNA_Ecto-sp13_S_contig16596.4732.1|Name=mRNA_Ecto-sp13_S_contig16596.4732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2239bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16596:1543..3781+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTGGGTGACAGAGATGGACCTCGGGGGGCACGGGGGCATCCAGCG
GACCCTGCTGCAGAAACGGGTCGGGGATTTCGACGGGAGGGAGGGGCAGG
ACGCAATCCCGAACTGGGTGATGGCGTGCGTTCTGCACGGGGAGTTCCAC
ACCAAGGAGCAGGACAAAATGGCGTTCTTTCTGGCCCCCTGGATACCGCC
AGCGCGAGGCGGCGGCGGCGGCCTCTCTCTGCCGTCCACCCCGCACCGGC
AGCCGCAAGGGAAGAGAGGCGGAGGGGGGAGCAGCGGTGCGGCGGGGGAC
GCGAGGAAGCCCGCCTCGCTGGGGGGTTCGAGAGGAAGCGGAGCGGCTGG
CACCGCCGCCGCCGCCGCCGGAGGAAAGGCCGGCGGGGGGGCTGCGGTAG
GGGCGGGCGGCGTGCCCTCGAACCATATGTCACAGAGGTTCACGGCTCCT
GTGCAGATGCTCGTGTCGAAGGTTGGTTGATTTTTTGTTGACCCTTCATG
GGCGTAACTTGTGTTACGTTCTCTGCGCTCGAGAAGGATGTTGAGGTTGT
GCTCGGGGTGAGGAGGGCCTGAGGCTGTTTCGCTTACAGGTGTCTCGCCT
ACCCCGTCGGACCCTCTGATTTGTTTGGGTTTCATTTGAAGCGTTGTGTG
GAGAAGTACTGCAGCGGTGGCTGACATTCTGCTTGCTTTCCTCGGCCGCC
TTGTCTTCCGCCCGCTGCTGCCCTTGGCAGCAGTTCGCGAGAACGAACGA
GTGGTCCAGGCAAAGACAGCAGGTTGCCATGTGCACACCTCACGAAGCAA
GTTGTGTATTCAGCAGCGGGCGTATCCAGAGACCTGAGTGACTGCCTGCC
GCTGTCCTTTCGCTCTTTAGTTTTTCTCGCTCATGTTTCCCCCGCTCCGC
TTCTTCAGGAAGGTACAACCGGCCTTCCCCCTTGTGACTACCGTAACCAT
GACCACACTTAGTCCCGCACATATGTTGATAAAGAATCCCTCTCAAAGCC
AAAACAGAGGAAGCAGGAGACCCTCTCTGATCTGCCTATCGTGCCCCCCG
CGCTCCTCGCTTAGGTCATGGCGTATGTCCTCTCTCACGAAGACCTCCAC
CAGCACCTTGAGAGCACGGTGGTACACCCGGAGGGGGGAGATGGCACCGA
CGGCAGCACGGGCGGCAACGGCGACGGCAGCGGCGATGCAGCTGGAGGGG
TGATGATGCGTCCTTCCCGAGAGACGCCGGAAGACTTGGTGGAGGTGCTC
TGCGGCGAGCGAGTGCTGGAGCCACACCTGTATATTGGTGAGGTTTGGGG
ATGGGGGCGGTGGGGTGGGGGTGGGGGGTTCATTTGCCCGTGTAGCGGTG
GAGGTTCGCGCTGCGAGAGATTGTGACTAGAGGAAAGAGCGTTGCTGGGG
AGGAGAGGAAGAGGTGGCAGTTGGTCGTAGAGGGGGAGTGAGCAGGTGCC
GGTGTTTGTCAACATCTCAAGGCGTTGGCGATGTTACTTCGACACTGCTT
TTGGCGTTTGAGTCCAGCCTTTTACAGCAGCAGCGCACGCGCATCTGACG
CCTTGTCTCTATGTGTTGCCCTCGGGGAAATGTGGCTGAAAATATCATGC
CCCGCACGCGCTCGGATGCCCACCCCACCTGCTCACTCACCCGTCCACTC
CCTTCCTATGCTTTCCGTTTTTTTTGCGCTCGCCACGAACATCACACCCG
CTGTATCGTCTTGTCCATCGATAGGCGCGGTCCAGAAGTATATTTGGGAG
GCAACCGGGTCAGGTCCCACCCTCTTCTTGCACTACAGGTCCCGGAGGCG
ACCGCCGGGGGGCCCGTAGCGCGAACCACATAAGACGGTGCTAGCTTAGC
ATGGGATAAGAGAACGCGATGAGAGGGGGTAGCAGGAGGGTTGAGTCGGT
CAGTCGGCGGGAGGGGGAAAGACCTGCAACGATAAGCACGACGTAGTCAC
GCGGGGGAAGGAGCGTACGATGTTTACTTGGGCGTTGGCTGTTTTTGAGT
GCGATGTCTCTCTCGTGCGGGCGGGAAGAGACGTGTTGTGCTGCGTGTAT
GAAGCCTAGAGCAAGAGATGCAACCACGCCAGGAATATATTAGCGTAAGA
CGGTGGTGTTCGTTGCGGAAAGGTGGGGCACACCCGACGGTACCGGCGCC
ATGATAGACCTCCCTACGGCCTTCCTCTGCAGAGGTCATTCAGACTTCTG
TGATCGGCATGGTTCTGGTCCTCAATTGTTTTGTCGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16596:1543..3781+

>mRNA_Ecto-sp13_S_contig16596.4732.1 ID=mRNA_Ecto-sp13_S_contig16596.4732.1|Name=mRNA_Ecto-sp13_S_contig16596.4732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16596:1543..3781+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTGGGTGACAGAGATGGACCTCGGGGGGCACGGGGGCATCCAGCG
GACCCTGCTGCAGAAACGGGTCGGGGATTTCGACGGGAGGGAGGGGCAGG
ACGCAATCCCGAACTGGGTGATGGCGTGCGTTCTGCACGGGGAGTTCCAC
ACCAAGGAGCAGGACAAAATGGCGTTCTTTCTGGCCCCCTGGATACCGCC
AGCGCGAGGCGGCGGCGGCGGCCTCTCTCTGCCGTCCACCCCGCACCGGC
AGCCGCAAGGGAAGAGAGGCGGAGGGGGGAGCAGCGGTGCGGCGGGGGAC
GCGAGGAAGCCCGCCTCGCTGGGGGGTTCGAGAGGAAGCGGAGCGGCTGG
CACCGCCGCCGCCGCCGCCGGAGGAAAGGCCGGCGGGGGGGCTGCGGTAG
GGGCGGGCGGCGTGCCCTCGAACCATATGTCACAGAGGTTCACGGCTCCT
GTGCAGATGCTCGTGTCGAAGGTCATGGCGTATGTCCTCTCTCACGAAGA
CCTCCACCAGCACCTTGAGAGCACGGTGGTACACCCGGAGGGGGGAGATG
GCACCGACGGCAGCACGGGCGGCAACGGCGACGGCAGCGGCGATGCAGCT
GGAGGGGTGATGATGCGTCCTTCCCGAGAGACGCCGGAAGACTTGGTGGA
GGTGCTCTGCGGCGAGCGAGTGCTGGAGCCACACCTGTATATTGGCGCGG
TCCAGAAGTATATTTGGGAGGCAACCGGGTCAGGTCCCACCCTCTTCTTG
CACTACAGGTCCCGGAGGCGACCGCCGGGGGGCCCGTAG
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