mRNA_Ecto-sp13_S_contig1659.4729.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1659.4729.1
Unique NamemRNA_Ecto-sp13_S_contig1659.4729.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1659.4729.1 vs. uniprot
Match: D7FKT9_ECTSI (Tim44 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT9_ECTSI)

HSP 1 Score: 307 bits (787), Expect = 2.860e-104
Identity = 156/166 (93.98%), Postives = 159/166 (95.78%), Query Frame = 1 
Query:    1 MRVVGIIRRGISSSSSRLGEVRSSGGIFDPYVYRGARGKSLPPMMSSEGVKERLGIMRGHLKSGVCAGIIQKHVPAFHASKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEIKSSKSKGAQRAAFRLVDFKEPTRVLQMRVDRKKHISPKEGWGQAS 498
            MRVVGIIRRGISSSSSRLGEVRSSGGIFDPYVYRGA GK LPPMMSSEGV+ERLGIMR HLKSGVCAGIIQKHVP FH SKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEIKSSKS+GAQRAAFRLVDFKEPT VLQMRVDRKKHISPKEGWGQ +
Sbjct:    1 MRVVGIIRRGISSSSSRLGEVRSSGGIFDPYVYRGAGGKGLPPMMSSEGVRERLGIMRSHLKSGVCAGIIQKHVPDFHVSKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEIKSSKSRGAQRAAFRLVDFKEPTTVLQMRVDRKKHISPKEGWGQVT 166
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BLAST of mRNA_Ecto-sp13_S_contig1659.4729.1 vs. uniprot
Match: A0A6H5K0Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 4.510e-30
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:   43 SSRLGEVRSSGGIFDPYVYRGARGKSLPPMMSSEGVKERLGIMRGHLKSGVCAGIIQKH 219
            SSRLGEVRSSGG+FDPYVYRGA GK LPPMMSSEGVKERLGIMRGHLKSGVCAGIIQ H
Sbjct:   21 SSRLGEVRSSGGVFDPYVYRGAGGKGLPPMMSSEGVKERLGIMRGHLKSGVCAGIIQVH 79
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BLAST of mRNA_Ecto-sp13_S_contig1659.4729.1 vs. uniprot
Match: A0A835YW25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW25_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.730e-26
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 1 
Query:  124 PPMMSSEGVKERLGIMRGHLKSGVCAGIIQKHVPAFHASKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEI-KSSKSKGAQ---RAAFRLVDFKEPTRVLQMRVDRKKHISPKEGWGQ 492
            PP+ +  G+K R  + +GH+KS     II+KHVP F    FPP+A+Q+F+ F +AHRKGD  +L  L TE L+ ++K ++ +  +  G++   RAAF+L+   EPT VLQ+R   +K    K GWGQ
Sbjct:    5 PPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQ 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1659.4729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKT9_ECTSI2.860e-10493.98Tim44 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K0Z7_9PHAE4.510e-3093.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YW25_9STRA4.730e-2642.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1659contigEcto-sp13_S_contig1659:2..2665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score308.9
Seed ortholog evalue1.4e-81
Seed eggNOG ortholog2880.D7FKT9
Preferred nameKRE29
Model size498
KEGG koko:K09657,ko:K17426
KEGG ReactionR07610,R07611
KEGG Pathwayko00513,ko01100,map00513,map01100
Hectar predicted targeting categorymitochondrion
GOsGO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0030915,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0106068,GO:1901360,GO:1902494,GO:1990234
Exons4
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG4599@1,KOG4599@2759
Ec32 ortholog descriptionTim44-like domain
Ec32 orthologEc-17_001350.1
EC2.4.1.244
Cds size498
COG Functional cat.L
CAZyGT7
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko01000,ko01003,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462870.9199657-CDS-Ecto-sp13_S_contig1659:1..1451681462870.9199657-CDS-Ecto-sp13_S_contig1659:1..145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1659 2..145 -
1681462870.9339025-CDS-Ecto-sp13_S_contig1659:513..6541681462870.9339025-CDS-Ecto-sp13_S_contig1659:513..654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1659 514..654 -
1681462870.9462512-CDS-Ecto-sp13_S_contig1659:1689..18581681462870.9462512-CDS-Ecto-sp13_S_contig1659:1689..1858Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1659 1690..1858 -
1681462870.9602005-CDS-Ecto-sp13_S_contig1659:2621..26651681462870.9602005-CDS-Ecto-sp13_S_contig1659:2621..2665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1659 2622..2665 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1659.4729.1prot_Ecto-sp13_S_contig1659.4729.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1659 2..2665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1659.4729.1

>prot_Ecto-sp13_S_contig1659.4729.1 ID=prot_Ecto-sp13_S_contig1659.4729.1|Name=mRNA_Ecto-sp13_S_contig1659.4729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
MRVVGIIRRGISSSSSRLGEVRSSGGIFDPYVYRGARGKSLPPMMSSEGV
KERLGIMRGHLKSGVCAGIIQKHVPAFHASKFPPVANQIFKDFFEAHRKG
DTRALAGLTTEELYASLKGEIKSSKSKGAQRAAFRLVDFKEPTRVLQMRV
DRKKHISPKEGWGQAS
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mRNA from alignment at Ecto-sp13_S_contig1659:2..2665-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1659.4729.1 ID=mRNA_Ecto-sp13_S_contig1659.4729.1|Name=mRNA_Ecto-sp13_S_contig1659.4729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2664bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1659:2..2665- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGTGGTGGGGATCATTCGGAGAGGAATTTCCTCCAGCAGGTGCGC
TTAACCCTTCAACGCGCTGCTGCTCTGTCTTTGATGCAACATGCGCTATT
TGGTACTCACTGCACTGCATTTCTATTTGTACTCTATGCTGCAGCAGACT
ACAGCAGTACTCTTACAGTAGTACAACGCTACGACATATCAAAGCAGGTG
TGAGCCGCTCTCCCTCACTCCTCTGTGTTCTTACTCATTGCGTGCTATAC
ACTGAAAATACATTAGAATCGCTGCTCTAGCAACACTATGTTGGCTACAG
CACATATATGTTCTCTCTCTGTCTCTCTCTTTCTCTCTCTCTCTCTCTCT
CTCTCGTGCATTTGTTTGTGTATCATTCGAAGAAACGTCGATGCTCTGCT
ACATTTGTCGTGCTGTTACTGCTGTGCATGCAGTTGAACCAGGATGAATA
TTATAGTGCGGCATGCACCTCGGCGAGACGACCGTGTAGCCGAGCGCCTA
CAGCACCGACTCCACCGCAGGCTGCCCAATACCTCTCTCTCTCTCTGTCT
CTCTCTCTGTCTCTCTCTCTCCCTCTCTTGTACGTAGCGGGCACCTTCTA
CAGACCAAGGGTGGCTTATGCTGGCCACGATCTTCCTTCTTACCTTCCCT
CCCTGCACACAGCAGTAGGAAAGGCACGAACGGGAGGTTGAGCTACATTC
ATACTGCGGCTGTGGCTAGGTGCATGTATCGGATAATGCCAACGTTTGCC
GACTGACAATTTTTATGGTGCGCACCCCAAAACCCCTCGTCCAACTCCGC
TTCGCAGCTCGCGGCTGGGAGAGGTGCGCAGCTCCGGTGGCATCTTTGAC
CCTTACGTGTACCGAGGGGCCAGGGGTAAAAGCCTTCCTCCAATGATGAG
CAGCGAAGGCGTGAAGGAAAGGCTCGGCATCATGCGGGGCCACCTCAAGT
CGGGAGTGTGTGCGGGGATCATCCAGGTGCTTACGGTTTTGCCCAGCGCC
CTCCCATGTTCGTTATTGTTACTGTAGTTGTGAGAAGCTGTGGGCCGGCA
ACAACTTTTTTTTTTTTTCTTAATATGACACACCGCTACTTCACTGCGAC
TTTGCTTTGAGGTGTTGTTACACGAATCGCTTCGCTCTGCTCTGTCGCAC
TGCCGCCTGACGCGTATCCGCTCCGCTCCGTGCCGCGAGGTTTCATCCGA
TTTGACAGACTGACTGCACAAGGGTCGTCCTAGGGCGGAGTGAGCGATGA
ACTCATGAGCTCATAAGCGATTGCCAGAGTTCTTAGTTAAAAGTGTTAAC
GCAATGCTAAAGTAGAAATCAACAGCAGAAATTATTGGGAACTGTAGGTA
TATTGATGTGGGGGTGTGGGGGCTAATGACTACCCTTCAATGCCATTGAG
TAGGCTGGTGAACTCTCGCTTTCATCCTTCGGGGCTTCTTATGGGCGGTA
TTGTCCGGTCGCAAGATCGTGGGTGGTGTCATTGGTGCCCTTTGTCTCGC
AAGCCGCAGTCCTTGCTCGATGTATCGAACCCAACCTGAATCACGGTATC
ATTGTTCGTACCGTCGTTGTGTCTGAATATCGATATGATTTTCGTTATGT
TTTTTCTCCGACGTTGCTCCCGTCACCAAAGCCACGTTTCGCGCGTTTTT
TATGAGTAGTCTATCGAAGTACCCCGCTCTGCGCCAAATGCGCCCTCGGA
TTTTCTGCTTGGCGGCAGCTCCCAGCATCATATATCTCGGTCGATGGAGC
GGTTCTACTTCGTCCACGAAGAATCCTAAACAACAGTAGGAAGGAAATTC
CTCCTGCCACACACACCCAAGCAGAGGTGCACAGGATGAAGACCACCGGT
ATTTTTTTCCGAGAACGACCAGTGCCAGTGTTGGTACGAAAGCTATAACG
CCCACCCTTACGCGTTGCAAACTTACATATTTCCCTTCCCTTTACAGCGG
TATCCTCCCGCCCCCCCAATCCCACCTCTCTCCCGCCAAACGACTGGACT
GGCCGCTTCAGAAGCACGTGCCGGCCTTCCACGCGTCCAAGTTCCCTCCC
GTGGCTAACCAGATCTTCAAAGATTTCTTCGAGGCGCACCGAAAAGGAGA
CACGCGTGCGCTTGCGGGCCTGACTACGGAGGAGCTGTACGCTAGCTTGA
AGGTGACCAGAGTGAACTCCCCTCGATTCGTGCGTGCTCACCTAACCTAT
GCATGCGATACCTGGAGGCGAGGCTGTTTGCGCTGGTGTGAAGCTTTGTG
CGCACCATAGACCGAGAAGACCTTGTGGAGAACTATGTAACAGACTACAG
CTAGCCTCGAAATTTGCCGAGAAATTCATCTCTTGTCCTCTCATGATACG
TATATGAAGGCGTTCGTCTTCCTTTACTGGGGGCTCCACGCTGTGTGTGC
GGCCTCTAAAGCTTGCTCAACACGCGAAGACCGGAAAATATCCACGCACA
GCAGCACCGTACAAACCTCTTCGTCGGTCCTCGTCACATGGAAAACCCTT
TTTTGTTCGTGCATTATCAGGGTGAGATAAAATCGTCTAAGAGTAAGGGT
GCACAGCGAGCCGCGTTTCGATTGGTGGACTTCAAGGAGCCTACGCGGGT
ACTTCAAATGCGGGTGGACCGCAAAAAGCACATCTCTCCGAAAGAGGGCT
GGGGACAGGCAAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1659:2..2665-

>mRNA_Ecto-sp13_S_contig1659.4729.1 ID=mRNA_Ecto-sp13_S_contig1659.4729.1|Name=mRNA_Ecto-sp13_S_contig1659.4729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1659:2..2665- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGTGGTGGGGATCATTCGGAGAGGAATTTCCTCCAGCAGCTCGCG
GCTGGGAGAGGTGCGCAGCTCCGGTGGCATCTTTGACCCTTACGTGTACC
GAGGGGCCAGGGGTAAAAGCCTTCCTCCAATGATGAGCAGCGAAGGCGTG
AAGGAAAGGCTCGGCATCATGCGGGGCCACCTCAAGTCGGGAGTGTGTGC
GGGGATCATCCAGAAGCACGTGCCGGCCTTCCACGCGTCCAAGTTCCCTC
CCGTGGCTAACCAGATCTTCAAAGATTTCTTCGAGGCGCACCGAAAAGGA
GACACGCGTGCGCTTGCGGGCCTGACTACGGAGGAGCTGTACGCTAGCTT
GAAGGGTGAGATAAAATCGTCTAAGAGTAAGGGTGCACAGCGAGCCGCGT
TTCGATTGGTGGACTTCAAGGAGCCTACGCGGGTACTTCAAATGCGGGTG
GACCGCAAAAAGCACATCTCTCCGAAAGAGGGCTGGGGACAGGCAAGC
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