mRNA_Ecto-sp13_S_contig16585.4728.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16585.4728.1
Unique NamemRNA_Ecto-sp13_S_contig16585.4728.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16585.4728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16585contigEcto-sp13_S_contig16585:595..1245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size568
Hectar predicted targeting categoryother localisation
Exons2
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462870.8404753-UTR-Ecto-sp13_S_contig16585:594..6771681462870.8404753-UTR-Ecto-sp13_S_contig16585:594..677Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16585 595..677 +
1681462870.875229-UTR-Ecto-sp13_S_contig16585:1171..12451681462870.875229-UTR-Ecto-sp13_S_contig16585:1171..1245Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16585 1172..1245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462870.8513997-CDS-Ecto-sp13_S_contig16585:677..8151681462870.8513997-CDS-Ecto-sp13_S_contig16585:677..815Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16585 678..815 +
1681462870.8624744-CDS-Ecto-sp13_S_contig16585:898..11711681462870.8624744-CDS-Ecto-sp13_S_contig16585:898..1171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16585 899..1171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16585.4728.1prot_Ecto-sp13_S_contig16585.4728.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16585 678..1171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16585.4728.1

>prot_Ecto-sp13_S_contig16585.4728.1 ID=prot_Ecto-sp13_S_contig16585.4728.1|Name=mRNA_Ecto-sp13_S_contig16585.4728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MLKGNAILIPISLSSYDHWSAWIERQLVQHVWPMRTHGRLFRAHQSSRQP
PVTLGPTRACATAETRGKEAQARSFETFQAVPYNTGVAHSDTTQRITRVT
ERHNTITKRQCGDAEGCDLSNKPYVANIVVSDARYR*
back to top

mRNA from alignment at Ecto-sp13_S_contig16585:595..1245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16585.4728.1 ID=mRNA_Ecto-sp13_S_contig16585.4728.1|Name=mRNA_Ecto-sp13_S_contig16585.4728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16585:595..1245+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCTTATGGAAGCAAGTCAACTATGGACCGACTTGTCGAAACGGTCGCA
CCTTGAAGAAGTCAAAATTGTGTGATATACGATATGCTTAAAGGTAATGC
AATACTGATACCGATATCGCTAAGCTCTTACGATCACTGGTCGGCGTGGA
TCGAACGACAACTTGTGCAACATGTGTGGCCCATGAGAACACACGGCCGG
TTGTTTCGTGCCCATCAGAGTCGGTTTCGAAGAGTTCAGATTGTACGTAA
GCCCATATCCACGCAACCGCCGAAATTGGTGCCGTGATATGATATTGGGC
CATATCACGGCAACCACCGGTCACCTTGGGACCAACGAGGGCTTGTGCAA
CAGCTGAAACCCGTGGGAAGGAAGCGCAGGCACGGAGTTTCGAAACATTT
CAAGCTGTTCCATACAACACCGGTGTCGCACATAGCGATACCACACAGAG
AATCACGCGGGTTACTGAAAGACACAACACGATTACGAAACGCCAATGCG
GCGATGCGGAAGGTTGCGACTTATCAAATAAACCATACGTGGCGAATATT
GTAGTAAGCGATGCAAGATATCGCTAGGGCAACAATGCTAGATAGTGCTG
ATCTTATCAGGTAGTGTCTTGCCACGCAATTTGGGTCGCGAGTTGCATTC
A
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16585:595..1245+

>mRNA_Ecto-sp13_S_contig16585.4728.1 ID=mRNA_Ecto-sp13_S_contig16585.4728.1|Name=mRNA_Ecto-sp13_S_contig16585.4728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16585:595..1245+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTAAAGGTAATGCAATACTGATACCGATATCGCTAAGCTCTTACGA
TCACTGGTCGGCGTGGATCGAACGACAACTTGTGCAACATGTGTGGCCCA
TGAGAACACACGGCCGGTTGTTTCGTGCCCATCAGAGTTCACGGCAACCA
CCGGTCACCTTGGGACCAACGAGGGCTTGTGCAACAGCTGAAACCCGTGG
GAAGGAAGCGCAGGCACGGAGTTTCGAAACATTTCAAGCTGTTCCATACA
ACACCGGTGTCGCACATAGCGATACCACACAGAGAATCACGCGGGTTACT
GAAAGACACAACACGATTACGAAACGCCAATGCGGCGATGCGGAAGGTTG
CGACTTATCAAATAAACCATACGTGGCGAATATTGTAGTAAGCGATGCAA
GATATCGCTAG
back to top