mRNA_Ecto-sp13_S_contig16573.4721.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16573.4721.1
Unique NamemRNA_Ecto-sp13_S_contig16573.4721.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16573.4721.1 vs. uniprot
Match: A0A6H5KD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD91_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 3.010e-113
Identity = 445/650 (68.46%), Postives = 452/650 (69.54%), Query Frame = 1 
Query:    1 MNESNEGLASGADLPSFEDEVADYDVEPMDEQGGSSLSGRSSEPARPXXXXXGHTSPVSRLLGKISRTTGMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KRPRRILLSPAEPLPQPRAPRAPVVKRIPFAAPPVAGVPPGXXXXXXXXXXPRRLLGNCGEAFAEVAEGRGLGSPCGSSGXXXXXXXXXXXXXXXXXXDGAAGSPASPVGFGNARQASVPMEETYSYXXXXXXXXXXXXXXXXXXXRSTMRLQRMVSNDSIASCAYNGGGGMMPRGMMPRAGGGYGNDNGGEIVMPCVXXXXXXXXXXXXXXXXXXXXXAQGGD-----LLASPASPAPHLVLPRGSSGSNSSXXXGAGFIGASGAFSTAAFVQESAAAHXXXXXXXXXXXXXXXXFPSQRAAYPMM--ATSNVAPPXXXXXXXXQPATRPEVGTPGTATAAAAASAKPGLTMDHVGAQDHQRHGHERSFSAVVDDALAALSGASPRGSGCSTADVSLDSSLSPSSPSAXXXXXXXXXXXXXXX-----------------------------------------AVRCLTEAQYGQGGREEKMATAGSG--RSDADSLRE 1797
            MNES+EGLASGADLPSFEDEVAD DVEPMD+Q G + SGRS EPARP     GHTSPVSRLLG         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KRPRRILLSPAEPLPQPRAPRAPVVKRIPFAAPPVAGVPPG          PRRLLGN GEAFAEVAEG GLGSP       XXXXXXXXXXXXXX  DGAAGSPASP+GFGNARQASVPMEETYSY                   RSTMRLQRMVSNDSIASCAYNG                              XXXXXXXXXXXXXXXXXXXXX          LLASPASPAPHLVLPRGS      XXX                        XXXXXXXXXXXXXXX FPS RAAYPMM   TSNVAP XXX XXX   ATRPEVGTPGTATAAAAASAKPGLTMDH GAQDH RHGHERSFSAVVDD+LAALSGASPRGSGCSTADVSLDSSLSPSSPS XXXXXXXXXXXXX                                           A RCL EAQYGQ GREE+     +G  RSDADS  E
Sbjct:    1 MNESDEGLASGADLPSFEDEVADDDVEPMDKQEGRNPSGRSPEPARPPPP--GHTSPVSRLLGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPRRILLSPAEPLPQPRAPRAPVVKRIPFAAPPVAGVPPGRSKHRRRDDDPRRLLGNYGEAFAEVAEGCGLGSPXXXX---XXXXXXXXXXXXXXGSDGAAGSPASPIGFGNARQASVPMEETYSYAFEGVGGGGRRGGAGAG--RSTMRLQRMVSNDSIASCAYNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLASPASPAPHLVLPRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFPSPRAAYPMMPAVTSNVAPXXXXTXXX---ATRPEVGTPGTATAAAAASAKPGLTMDHGGAQDHHRHGHERSFSAVVDDSLAALSGASPRGSGCSTADVSLDSSLSPSSPSXXXXXXXXXXXXXXKAXXXXXXXXXXXXXRCYSPTTXXXXXXXXXXXXXXXXXXXXXAARCLAEAQYGQRGREEEKVATTTGLLRSDADSPLE 640
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BLAST of mRNA_Ecto-sp13_S_contig16573.4721.1 vs. uniprot
Match: D7G2P8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P8_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 6.280e-47
Identity = 128/151 (84.77%), Postives = 129/151 (85.43%), Query Frame = 1 
Query: 1351 ATSNVAPPXXXXXXXXQPATRPEVGTPGTATAAAAASAKPGLTMDHVGAQDHQRHGHERSFSAVVDDALAALSGASPRGSGCSTADVSLDSSLSPSSPSAXXXXXXXXXXXXXXXAVRCLTEAQYGQGGREE-KMATA-GSGRSDADSLRE 1797
            ATSNVAPPXXXXX   QPATRPEVGTPGTAT    ASAKPGLTMDH G QDH RH HERSFSAVVDDALAALSGASPRGSGCSTADVSLDSSLSPSSPS XXXXXXXXXXX    AV  L EAQYGQGGREE KMAT  GSGR+DADSLRE
Sbjct:    5 ATSNVAPPXXXXX---QPATRPEVGTPGTATXXXXASAKPGLTMDHGGPQDHHRHWHERSFSAVVDDALAALSGASPRGSGCSTADVSLDSSLSPSSPSXXXXXXXXXXXX----AVGGLAEAQYGQGGREEEKMATTTGSGRNDADSLRE 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16573.4721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KD91_9PHAE3.010e-11368.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2P8_ECTSI6.280e-4784.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16573contigEcto-sp13_S_contig16573:414..2727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1818
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003040.1
Cds size1818
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462870.3601406-CDS-Ecto-sp13_S_contig16573:413..4731681462870.3601406-CDS-Ecto-sp13_S_contig16573:413..473Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16573 414..473 +
1681462870.3698983-CDS-Ecto-sp13_S_contig16573:915..25011681462870.3698983-CDS-Ecto-sp13_S_contig16573:915..2501Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16573 916..2501 +
1681462870.3782444-CDS-Ecto-sp13_S_contig16573:2555..27271681462870.3782444-CDS-Ecto-sp13_S_contig16573:2555..2727Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16573 2556..2727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16573.4721.1prot_Ecto-sp13_S_contig16573.4721.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16573 414..2727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16573.4721.1

>prot_Ecto-sp13_S_contig16573.4721.1 ID=prot_Ecto-sp13_S_contig16573.4721.1|Name=mRNA_Ecto-sp13_S_contig16573.4721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=606bp
MNESNEGLASGADLPSFEDEVADYDVEPMDEQGGSSLSGRSSEPARPPPP
PPGHTSPVSRLLGKISRTTGMPPPPAAMTVKSSATTTAAAATAAAAAAAG
GKSPSGPRPITTTVIRPSAAASAAAAAAAPPPHPQASISSSSGSRRSSKR
PRRILLSPAEPLPQPRAPRAPVVKRIPFAAPPVAGVPPGGSKHRRRDDDP
RRLLGNCGEAFAEVAEGRGLGSPCGSSGGGGVDGGDYYDEDGGGGGDGAA
GSPASPVGFGNARQASVPMEETYSYAFEGAGGGRGRGRGRAGAGRSTMRL
QRMVSNDSIASCAYNGGGGMMPRGMMPRAGGGYGNDNGGEIVMPCVAGGA
GGPATAATAAASGATTSAQGGDLLASPASPAPHLVLPRGSSGSNSSSSSG
AGFIGASGAFSTAAFVQESAAAHAAAAAAVAGAPAGPPAFPSQRAAYPMM
ATSNVAPPPPPPPPPPQPATRPEVGTPGTATAAAAASAKPGLTMDHVGAQ
DHQRHGHERSFSAVVDDALAALSGASPRGSGCSTADVSLDSSLSPSSPSA
AAAAAAAKLQPPPPPAVRCLTEAQYGQGGREEKMATAGSGRSDADSLREV
RVAAH*
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mRNA from alignment at Ecto-sp13_S_contig16573:414..2727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16573.4721.1 ID=mRNA_Ecto-sp13_S_contig16573.4721.1|Name=mRNA_Ecto-sp13_S_contig16573.4721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2314bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16573:414..2727+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGAGAGCAACGAGGGCCTGGCTTCCGGTGCAGATCTACCTAGCTT
CGAGGATGAGGTGAGCGTGTATGCACGCGGTGATTCTGCCGAGCAGAAGA
GGAGGAAGCTTGCGGTTCGTTCATCGATCTTGTTTTGAGTGTGGTACTCA
CACCCGACCTTGTAGTCCTTTCATCGAGTGGTATTCCCACAATCAATCTC
TTGTGGATGGTGGGTAGACGGGTAGTAGTAGATAGCACGCCCTGGATCTA
CTCTAGTATCGACGCGAAGGGCTAGAGTCTCGAAGTGCTCGCGCGGCCGC
TAGTTCGGCGGCGACAGCGGCTGATGCCTCTCTCCTCTATGCAGCTAATC
AAGTCTGGTCACGTTTTTGTTTGTTGCAGGCTTATCATCTGCAGGCACGA
GCAAAACGAGAGGCGATCTCTTGGAACCACAACATGACATGACAACATCT
TTTTAGTGTCCAATATCTCTGCCACCAATGCTGCTCCCCCCCGTGTGCCT
AGGTAGCTGACTACGATGTAGAGCCTATGGACGAGCAAGGGGGCAGCAGC
CTGAGCGGTCGAAGCTCGGAACCAGCGCGACCACCACCACCACCACCAGG
GCACACCTCGCCCGTTTCTCGCTTGCTGGGCAAGATCAGCCGGACCACCG
GCATGCCGCCGCCGCCGGCGGCGATGACCGTCAAGTCTTCCGCTACTACT
ACTGCTGCTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGGCGGGAAATC
ACCCTCTGGGCCCCGGCCAATCACCACCACCGTCATCCGACCCTCGGCAG
CAGCGTCAGCAGCAGCAGCAGCAGCGGCGCCACCACCTCATCCCCAGGCA
TCTATTAGCAGCAGCAGCGGCAGCAGGCGCAGCAGCAAGAGACCCAGGAG
GATTCTCCTCTCGCCCGCGGAGCCCCTACCCCAGCCGAGGGCGCCGCGCG
CCCCCGTCGTGAAGAGGATTCCGTTCGCGGCGCCGCCGGTCGCGGGGGTC
CCTCCCGGCGGATCGAAACACCGCCGCCGGGACGACGACCCGCGGCGGCT
GCTCGGCAACTGCGGCGAGGCGTTCGCTGAAGTGGCCGAGGGCCGCGGCC
TGGGGTCGCCGTGCGGCAGCAGCGGCGGCGGCGGTGTCGACGGCGGGGAC
TACTACGACGAGGACGGCGGCGGTGGCGGCGACGGCGCGGCCGGCTCTCC
GGCAAGTCCTGTCGGGTTCGGGAACGCTCGGCAGGCTTCGGTCCCGATGG
AAGAGACGTATTCGTACGCTTTTGAGGGGGCAGGAGGAGGACGAGGACGA
GGACGAGGACGAGCCGGAGCCGGCAGGAGCACGATGCGTCTGCAGAGAAT
GGTGTCGAACGATTCAATAGCGTCTTGTGCTTACAATGGCGGCGGCGGTA
TGATGCCACGCGGTATGATGCCACGCGCCGGCGGCGGTTACGGCAACGAC
AACGGCGGTGAGATTGTGATGCCGTGCGTGGCCGGCGGCGCCGGTGGTCC
CGCTACCGCTGCCACTGCCGCCGCGTCCGGGGCCACCACGTCAGCCCAAG
GAGGAGATCTTCTCGCCTCACCAGCGTCGCCGGCGCCTCACCTGGTGCTC
CCTCGCGGTAGCAGCGGCAGCAACAGCAGCAGCAGCAGCGGTGCTGGTTT
CATCGGTGCTTCGGGCGCCTTCTCTACCGCCGCCTTCGTCCAAGAGTCTG
CAGCCGCGCACGCAGCGGCTGCTGCTGCTGTGGCGGGGGCGCCTGCGGGT
CCCCCCGCTTTCCCGTCTCAACGTGCCGCCTACCCGATGATGGCAACAAG
CAACGTGGCGCCGCCGCCGCCGCCGCCGCCCCCGCCGCCGCAGCCGGCAA
CACGTCCAGAGGTTGGAACTCCGGGCACCGCTACCGCTGCCGCCGCGGCG
AGCGCGAAGCCGGGGCTGACGATGGACCACGTGGGGGCCCAGGACCACCA
ACGGCACGGGCACGAGCGATCGTTCTCGGCCGTCGTGGACGACGCCCTCG
CGGCCCTGTCGGGCGCGTCGCCTCGCGGGAGCGGCTGCTCCACCGCCGAT
GTGTCGCTGGACTCTTCGCTGTCTCCCTCGTCGCCGTCGTCGCAGTCGCC
GTCGGCGTCGGCGCTTTGCTACTCCCCCACGACCGCTGCAAGAGCAGCGG
CGGCGGCGGCGGCGGCGAAGCTGCAGCCACCACCACCGCCCGCTGTTCGC
TGCCTGACGGAGGCGCAGTACGGACAGGGGGGGAGGGAGGAGAAGATGGC
AACGGCGGGGTCGGGCAGAAGCGACGCCGACTCTCTCCGCGAGGTGAGAG
TAGCCGCGCACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16573:414..2727+

>mRNA_Ecto-sp13_S_contig16573.4721.1 ID=mRNA_Ecto-sp13_S_contig16573.4721.1|Name=mRNA_Ecto-sp13_S_contig16573.4721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1818bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16573:414..2727+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGAGAGCAACGAGGGCCTGGCTTCCGGTGCAGATCTACCTAGCTT
CGAGGATGAGGTAGCTGACTACGATGTAGAGCCTATGGACGAGCAAGGGG
GCAGCAGCCTGAGCGGTCGAAGCTCGGAACCAGCGCGACCACCACCACCA
CCACCAGGGCACACCTCGCCCGTTTCTCGCTTGCTGGGCAAGATCAGCCG
GACCACCGGCATGCCGCCGCCGCCGGCGGCGATGACCGTCAAGTCTTCCG
CTACTACTACTGCTGCTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGGC
GGGAAATCACCCTCTGGGCCCCGGCCAATCACCACCACCGTCATCCGACC
CTCGGCAGCAGCGTCAGCAGCAGCAGCAGCAGCGGCGCCACCACCTCATC
CCCAGGCATCTATTAGCAGCAGCAGCGGCAGCAGGCGCAGCAGCAAGAGA
CCCAGGAGGATTCTCCTCTCGCCCGCGGAGCCCCTACCCCAGCCGAGGGC
GCCGCGCGCCCCCGTCGTGAAGAGGATTCCGTTCGCGGCGCCGCCGGTCG
CGGGGGTCCCTCCCGGCGGATCGAAACACCGCCGCCGGGACGACGACCCG
CGGCGGCTGCTCGGCAACTGCGGCGAGGCGTTCGCTGAAGTGGCCGAGGG
CCGCGGCCTGGGGTCGCCGTGCGGCAGCAGCGGCGGCGGCGGTGTCGACG
GCGGGGACTACTACGACGAGGACGGCGGCGGTGGCGGCGACGGCGCGGCC
GGCTCTCCGGCAAGTCCTGTCGGGTTCGGGAACGCTCGGCAGGCTTCGGT
CCCGATGGAAGAGACGTATTCGTACGCTTTTGAGGGGGCAGGAGGAGGAC
GAGGACGAGGACGAGGACGAGCCGGAGCCGGCAGGAGCACGATGCGTCTG
CAGAGAATGGTGTCGAACGATTCAATAGCGTCTTGTGCTTACAATGGCGG
CGGCGGTATGATGCCACGCGGTATGATGCCACGCGCCGGCGGCGGTTACG
GCAACGACAACGGCGGTGAGATTGTGATGCCGTGCGTGGCCGGCGGCGCC
GGTGGTCCCGCTACCGCTGCCACTGCCGCCGCGTCCGGGGCCACCACGTC
AGCCCAAGGAGGAGATCTTCTCGCCTCACCAGCGTCGCCGGCGCCTCACC
TGGTGCTCCCTCGCGGTAGCAGCGGCAGCAACAGCAGCAGCAGCAGCGGT
GCTGGTTTCATCGGTGCTTCGGGCGCCTTCTCTACCGCCGCCTTCGTCCA
AGAGTCTGCAGCCGCGCACGCAGCGGCTGCTGCTGCTGTGGCGGGGGCGC
CTGCGGGTCCCCCCGCTTTCCCGTCTCAACGTGCCGCCTACCCGATGATG
GCAACAAGCAACGTGGCGCCGCCGCCGCCGCCGCCGCCCCCGCCGCCGCA
GCCGGCAACACGTCCAGAGGTTGGAACTCCGGGCACCGCTACCGCTGCCG
CCGCGGCGAGCGCGAAGCCGGGGCTGACGATGGACCACGTGGGGGCCCAG
GACCACCAACGGCACGGGCACGAGCGATCGTTCTCGGCCGTCGTGGACGA
CGCCCTCGCGGCCCTGTCGGGCGCGTCGCCTCGCGGGAGCGGCTGCTCCA
CCGCCGATGTGTCGCTGGACTCTTCGCTGTCTCCCTCGTCGCCGTCAGCA
GCGGCGGCGGCGGCGGCGGCGAAGCTGCAGCCACCACCACCGCCCGCTGT
TCGCTGCCTGACGGAGGCGCAGTACGGACAGGGGGGGAGGGAGGAGAAGA
TGGCAACGGCGGGGTCGGGCAGAAGCGACGCCGACTCTCTCCGCGAGGTG
AGAGTAGCCGCGCACTGA
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