mRNA_Ecto-sp13_S_contig1657.4718.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1657.4718.1
Unique NamemRNA_Ecto-sp13_S_contig1657.4718.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1657.4718.1 vs. uniprot
Match: D7FPR7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR7_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 1.780e-84
Identity = 161/174 (92.53%), Postives = 164/174 (94.25%), Query Frame = 1 
Query:    1 PLHHCTVGRY---EEAQSKRGKRDTEVIMSDEYSTVLTGGLSLKGGLFKSKKXXXXXXXXXXXXXXXXXXEAAIEDERNSGSAADGADAGGSGSDDGAKEDGPGEGNEQAGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 513
            PLHHCTVGR    EEAQS RGKR  E IMSDEYS VLTGGLSLKGGLFKSKKXXXXXXXXXXXXXXXXXXEAAIEDER+SGSAADGADAGGSGSDDGAK++G GEGNEQAGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG
Sbjct:    4 PLHHCTVGRDNWDEEAQSNRGKRYIEGIMSDEYSAVLTGGLSLKGGLFKSKKXXXXXXXXXXXXXXXXXXEAAIEDERSSGSAADGADAGGSGSDDGAKKEGAGEGNEQAGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 177
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BLAST of mRNA_Ecto-sp13_S_contig1657.4718.1 vs. uniprot
Match: A0A835YYZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYZ7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.960e-16
Identity = 59/147 (40.14%), Postives = 78/147 (53.06%), Query Frame = 1 
Query:   76 MSDEYSTVLTGGLSLKG-GLFKSKKXXXXXXXXXXXXXXXXXXEAAIEDERNSGSAADGADAGGSGSDDGAKEDGPGEGNEQAGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 513
            M+D+YS+V  G LSLK  GLF                      E A E+   S SA   AD+            G    +     +VD  LTPAQ+RF++ QL RE + +R +V++THR+R+E FN  +A +TEHNDIPR SAAGNG
Sbjct:    1 MADDYSSVQRGKLSLKADGLFGG-------GANKGGGNKKRAREGASEEPARSNSAKGSADS----------VRGAAAPSVSGSSDVDSGLTPAQKRFKEAQLARERQVMRELVKKTHRQRVEEFNQKIAKLTEHNDIPRISAAGNG 130
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BLAST of mRNA_Ecto-sp13_S_contig1657.4718.1 vs. uniprot
Match: A0A836CFW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 9.850e-16
Identity = 36/60 (60.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:  334 DDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 513
            D+ LTPAQ+R+++++  ++ K+I+ +V+ THR+RIE FN+ LASMTEHNDIPR SAAGNG
Sbjct:   71 DEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 130
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BLAST of mRNA_Ecto-sp13_S_contig1657.4718.1 vs. uniprot
Match: A0A7R9VT13_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VT13_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.740e-13
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:  298 PGEGNEQAGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 513
            P   +E AG   DDM T A+RR  K +LERE K +  +  Q+HRER+ENF+  L S+TEHNDIPR SAAGNG
Sbjct:   48 PSSDHENAGSSDDDM-TEAERRAMKVKLERERKDLEKIARQSHRERVENFSEKLGSLTEHNDIPRVSAAGNG 118
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BLAST of mRNA_Ecto-sp13_S_contig1657.4718.1 vs. uniprot
Match: A0A0P1A8L4_PLAHL (Conserved alpha-helical protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8L4_PLAHL)

HSP 1 Score: 68.6 bits (166), Expect = 6.420e-12
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  319 AGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 513
            AG EVDDM TPAQRR  + + +RE ++I  M  +T+RERIE  N  L S+TEH+D+PR SAAGNG
Sbjct:   49 AGVEVDDM-TPAQRRHAEHKKKREQEEIEKMASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 112
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BLAST of mRNA_Ecto-sp13_S_contig1657.4718.1 vs. uniprot
Match: A0A7S2WV15_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV15_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.010e-11
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:  325 EEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 513
            E+ + +LT A++R RKK  ERE +  R +  +THR+++E FN  L+S++EHNDIPR SAAGNG
Sbjct:   69 EDPEALLTEAEKRHRKKMRERETEMARSLTAKTHRQKVEEFNDRLSSLSEHNDIPRVSAAGNG 131
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BLAST of mRNA_Ecto-sp13_S_contig1657.4718.1 vs. uniprot
Match: A0A482S2J5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2J5_9ARCH)

HSP 1 Score: 67.8 bits (164), Expect = 1.430e-11
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:  334 DDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 513
            D  LT AQRRF+++Q E+E KKI+    ++ R+R+E FN  L+ +TEHNDIPR SAAGNG
Sbjct:   58 DAHLTEAQRRFKRRQQEKEEKKIKVEASKSFRDRVEEFNYKLSKLTEHNDIPRVSAAGNG 117
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BLAST of mRNA_Ecto-sp13_S_contig1657.4718.1 vs. uniprot
Match: W7TTM0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTM0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.540e-11
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:  328 EVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 513
            E DD LT  QRR   K  ERE + I+ +V ++HRERI+ FN  L+ +TEHNDIPR SAAGNG
Sbjct:   59 EKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
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BLAST of mRNA_Ecto-sp13_S_contig1657.4718.1 vs. uniprot
Match: A0A2R5GLX7_9STRA (Protein FAM32A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLX7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.010e-11
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:  343 LTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 513
            LTPAQRRF  KQ ERE ++I+ M   THRER++ FN  L+ ++EH+DIP+ SAAGNG
Sbjct:  307 LTPAQRRFELKQREREAERIKEMTRMTHRERVDAFNEKLSKLSEHHDIPKVSAAGNG 363
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BLAST of mRNA_Ecto-sp13_S_contig1657.4718.1 vs. uniprot
Match: A0A7S4JUH8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JUH8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.000e-11
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:  328 EVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 513
            ++DD +T A+RR  K +LERE K +  + +Q+HRER+E+F+  L ++TE NDIPR SAAGNG
Sbjct:   59 DIDDDMTDAERRAAKFKLERERKDLEKVAKQSHRERVEDFSEKLGNLTELNDIPRVSAAGNG 120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1657.4718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPR7_ECTSI1.780e-8492.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYZ7_9STRA4.960e-1640.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFW3_9STRA9.850e-1660.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9VT13_9STRA1.740e-1356.94Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A0P1A8L4_PLAHL6.420e-1258.46Conserved alpha-helical protein n=1 Tax=Plasmopara... [more]
A0A7S2WV15_9STRA1.010e-1152.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A482S2J5_9ARCH1.430e-1156.67Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
W7TTM0_9STRA1.540e-1158.06Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A2R5GLX7_9STRA2.010e-1159.65Protein FAM32A n=1 Tax=Hondaea fermentalgiana TaxI... [more]
A0A7S4JUH8_9STRA6.000e-1153.23Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1657contigEcto-sp13_S_contig1657:1298..3182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score67.0
Seed ortholog evalue9.7e-09
Seed eggNOG ortholog67593.Physo129832
Preferred nameFAM32A
Model size516
KEGG rclassRC00138
KEGG koko:K00213,ko:K12393,ko:K13120,ko:K17301
KEGG ReactionR01451,R01456,R07487,R07492
KEGG Pathwayko00100,ko01100,ko01110,ko04142,map00100,map01100,map01110,map04142
KEGG ModuleM00101
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0097159,GO:1901363
Exons3
EggNOG free text desc.apoptotic process
EggNOG OGs3QG97@4776,KOG3410@1,KOG3410@2759
Ec32 ortholog descriptionProtein of unknown function DUF1754, eukaryotic
Ec32 orthologEc-20_001090.1
EC1.3.1.21
Cds size516
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.991932-CDS-Ecto-sp13_S_contig1657:1297..14461681462869.991932-CDS-Ecto-sp13_S_contig1657:1297..1446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1657 1298..1446 +
1681462870.004162-CDS-Ecto-sp13_S_contig1657:2484..27251681462870.004162-CDS-Ecto-sp13_S_contig1657:2484..2725Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1657 2485..2725 +
1681462870.0197988-CDS-Ecto-sp13_S_contig1657:3056..31821681462870.0197988-CDS-Ecto-sp13_S_contig1657:3056..3182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1657 3057..3182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1657.4718.1prot_Ecto-sp13_S_contig1657.4718.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1657 1298..3182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1657.4718.1

>prot_Ecto-sp13_S_contig1657.4718.1 ID=prot_Ecto-sp13_S_contig1657.4718.1|Name=mRNA_Ecto-sp13_S_contig1657.4718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
PLHHCTVGRYEEAQSKRGKRDTEVIMSDEYSTVLTGGLSLKGGLFKSKKK
KKGKRKREEAEAAARAREAAIEDERNSGSAADGADAGGSGSDDGAKEDGP
GEGNEQAGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFN
ALLASMTEHNDIPRCSAAGNG*
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mRNA from alignment at Ecto-sp13_S_contig1657:1298..3182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1657.4718.1 ID=mRNA_Ecto-sp13_S_contig1657.4718.1|Name=mRNA_Ecto-sp13_S_contig1657.4718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1657:1298..3182+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACTGCACCACTGCACCGTCGGGAGGTACGAGGAGGCTCAAAGCAAGCG
GGGGAAGAGAGATACAGAGGTTATCATGAGCGACGAGTACTCCACAGTGC
TCACAGGTGGATTGTCGCTGAAGGGAGGGCTCTTCAAAAGCAAGAAAAAG
TGAGTCTCTCCATCTATCAACTTCCTGCTGTAGCAATACACACGACCTTC
ACGTGCAATCAAGCTCCACATCTCGAACGCAATATCTCTGTCTGTTCTCC
CCGTTCTTCCTGTGTCCAGTATCTGGATATCCGGATAAAATATTATTTCG
GAACGGGTAGATGTTATGTAGAGAGTTTACTGAAAATCTCACGTGTAAAG
CCACACCGATTGGAGCTCTCTCGGTTGACACCCGAGATCGGCGCTCTCCG
TGAACAGCTGAGAGAGGCCCGACCGTTGTTCAAGTTGATACTTGTCCATA
CAGATATGTAGATGCCGGGCCGAGCACCGGAGCGCAGCATGAGGAATATC
ATCATGCGACACTCCTTACTCTGCACTAAATGCTCAAAACTTGAGTATCT
TTGGGCTGACTGCTGTGTACCCAGTAAGCTACCGGCGGTGGGACTTGTGA
TTTTTTTGTTCGTACTTCGTCCTGTGGCATAACCGTAACCGGCTCCACCA
TTGAAAGGACGCGTGCGGTTGCGATCAGCGTGTTGGCTGTGAGTTCAGTT
TATTCTAATCTTTCCCGAGCTCCTCTCAACCTGGTTCTTGTGGAATGGGC
ATGCCTGTCCCTGCAAGGACCATGGACCCACCACACCCGCTCTTTCCTCT
TCGTGCCACAAATAATGAGCAAAAATGTATGCACAGAAACTCAGACCAAT
TCAAGTATTAATAGGTGTCCTGAGATAATATGGAACGCTGTCGCCTCTCT
ACTAACGACATCAACTTCACCGGTGACAGCTCAAAACTGTATCTGCGCGC
CGGCGTTTGAAGGTCGATGTCTTCAAGCGGAACAGCTTGTGTGCGTGCTC
TGGCTATAGCGTGATGTTGTTGCACGTGTCTGAGTTGATATTTTGCAGCT
TTCTGCAAAATGTTTTGTCTTCCTGCCGTTCTTGAGGCGTCTGCTTGACT
GCCAAGGGGGGGTGTTGCGCTCGTGCCATACCGGTGTAACATTGATGCCT
CACTTGGAACGTTGTTTGCGTTTGTGTTGCTCTACAGGAAGAAGGGGAAG
CGTAAGCGGGAAGAGGCCGAAGCAGCCGCACGGGCGCGGGAGGCTGCTAT
TGAGGACGAACGCAACTCTGGATCAGCGGCCGATGGTGCTGATGCTGGAG
GGTCTGGGTCAGACGACGGCGCAAAGGAAGATGGGCCTGGGGAAGGGAAT
GAACAAGCGGGCGAGGAGGTAGACGACATGCTGACGCCAGCCCAACGGCG
ATTCAGGAAAAAGCAGCTGGAACGCGAGGTGAGATACTCAAACCTGTCGG
ATCGCTTCATGTAAATATGTTCGTGACGAGCTGTATGTTGATGGAAGAAA
ACCTGTATATCGACTCTTGGAGACCCGCACATGCAAACAGACTGACTTTG
GTTCTGCAATGCTGTCGACGTTATGTAGGGCTTGTGAACCTCATGTTTGG
GCCGGTGCGCTCCCATGTATTGCGCGTTATCACCTCACCTCGTCCAGACA
CGGAATTGTTGGCACCATGACTGCCACATTCGCCCGTTTGCTATAATGTG
GAAACGACGTCAACTTGTTCTAATTGCTATCGGAATGCTTTTTGCCCCTT
GTGATGCAGGGGAAGAAGATTCGAGGCATGGTCGAGCAGACTCATCGCGA
ACGAATTGAAAACTTCAACGCTCTCCTTGCTTCAATGACCGAGCACAACG
ACATCCCGAGATGCTCGGCTGCAGGCAACGGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1657:1298..3182+

>mRNA_Ecto-sp13_S_contig1657.4718.1 ID=mRNA_Ecto-sp13_S_contig1657.4718.1|Name=mRNA_Ecto-sp13_S_contig1657.4718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1657:1298..3182+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACTGCACCACTGCACCGTCGGGAGGTACGAGGAGGCTCAAAGCAAGCG
GGGGAAGAGAGATACAGAGGTTATCATGAGCGACGAGTACTCCACAGTGC
TCACAGGTGGATTGTCGCTGAAGGGAGGGCTCTTCAAAAGCAAGAAAAAG
AAGAAGGGGAAGCGTAAGCGGGAAGAGGCCGAAGCAGCCGCACGGGCGCG
GGAGGCTGCTATTGAGGACGAACGCAACTCTGGATCAGCGGCCGATGGTG
CTGATGCTGGAGGGTCTGGGTCAGACGACGGCGCAAAGGAAGATGGGCCT
GGGGAAGGGAATGAACAAGCGGGCGAGGAGGTAGACGACATGCTGACGCC
AGCCCAACGGCGATTCAGGAAAAAGCAGCTGGAACGCGAGGGGAAGAAGA
TTCGAGGCATGGTCGAGCAGACTCATCGCGAACGAATTGAAAACTTCAAC
GCTCTCCTTGCTTCAATGACCGAGCACAACGACATCCCGAGATGCTCGGC
TGCAGGCAACGGATGA
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