mRNA_Ecto-sp13_S_contig16569.4717.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16569.4717.1
Unique NamemRNA_Ecto-sp13_S_contig16569.4717.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16569.4717.1 vs. uniprot
Match: D8LC74_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC74_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.030e-7
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  559 MGRDQVKVCVRTRPTSTFAQDAIVIDKEAQVLE-KHISKHRNTSCSRSTTHSPRGCIRSFKYTQVVND 759
            MGRD VKVCVRTRPTSTFAQDAIVIDKEAQ +   H +  +    + +  H  R     F++  V+++
Sbjct:    1 MGRDHVKVCVRTRPTSTFAQDAIVIDKEAQTITVNHGTLEQEAEIAATGMHDNRQNSFRFQFHHVLHN 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16569.4717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC74_ECTSI2.030e-750.00Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16569contigEcto-sp13_S_contig16569:977..2145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score65.1
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog2880.D8LC74
Preferred nameKLP1
Model size1169
KEGG koko:K10397
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
Cds size234
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.9412227-UTR-Ecto-sp13_S_contig16569:976..15341681462869.9412227-UTR-Ecto-sp13_S_contig16569:976..1534Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16569 977..1534 +
1681462869.9660556-UTR-Ecto-sp13_S_contig16569:1768..21451681462869.9660556-UTR-Ecto-sp13_S_contig16569:1768..2145Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16569 1769..2145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.9565077-CDS-Ecto-sp13_S_contig16569:1534..17681681462869.9565077-CDS-Ecto-sp13_S_contig16569:1534..1768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16569 1535..1768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16569.4717.1prot_Ecto-sp13_S_contig16569.4717.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16569 1535..1768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16569.4717.1

>prot_Ecto-sp13_S_contig16569.4717.1 ID=prot_Ecto-sp13_S_contig16569.4717.1|Name=mRNA_Ecto-sp13_S_contig16569.4717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MGRDQVKVCVRTRPTSTFAQDAIVIDKEAQVLEKHISKHRNTSCSRSTTH
SPRGCIRSFKYTQVVNDGVGGEAQPST*
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mRNA from alignment at Ecto-sp13_S_contig16569:977..2145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16569.4717.1 ID=mRNA_Ecto-sp13_S_contig16569.4717.1|Name=mRNA_Ecto-sp13_S_contig16569.4717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1169bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16569:977..2145+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTGAACCCGTTCGATCTGTTTCTGAGACACTTCCGAATCCCCAGACGCG
ACATAAGTAAAGCAGATATCTACTCGTCGTCCGACGAAATATGCGGCATG
TTGGTTCGACTGTGGGGGGTATGTCTCGAATGGGTAGTCTTTCTGTCTGT
GTTCGTGTACAGCGTTAATTTTTCCTTGATTCCACAGCCGTCGAAGGACC
GCCTACGCAGGATTAAGACTTGTATCTAGAAAAATAATAATGGATGCAGG
ACCGCCTATAATGAGCTAACAGGCAGACTTGCGGCTGAACGGTTGTCGGT
TCGGTTGAAACGGTCGATATCGATGTAAATCGACATTTTTGCCGTACTTT
TTAAACTCTCTAGTGGTGCTCTCTTCTCTCCCGTTACCCCTTTCTCTCCC
CTCCTCCGGCTACACGCAATGCACATGCATACACAGTACACACGCTGGTT
TTTGATGGACACCGCTGGGTTGGGTATACACCGTAGTTTCCTAGACGTCT
TCTCAAACGTTTCCAGTCAGTAAGGTCTAGACGATACCACAGAGAGAGTC
AATCGGCGATGGGACGAGATCAGGTGAAGGTTTGCGTTCGAACAAGGCCT
ACGTCTACCTTTGCACAAGATGCCATCGTCATCGACAAGGAAGCACAGGT
TCTTGAAAAGCATATCTCTAAGCACCGAAATACTTCCTGTTCGAGAAGTA
CCACACACAGTCCAAGGGGGTGTATTCGAAGCTTCAAGTACACACAGGTG
GTAAATGATGGAGTAGGAGGTGAAGCGCAGCCCAGCACCTAAGCACGAGC
ACACTACAGCAGCAGTAGTTAGATGAAGTCAACGCCTGTGCGTATGTGAA
CCTCGCCCAAAGGAATCTTAACGGTGTTTGTTCGGCGCAAATCTCCTCAA
TGCTCGTTGCGTCGATGAAGTTTTGTACTCAAGGTACTTGAAACAGTCGT
ACGCATTGATCGTATCGGTATTGTGCAAACGTATATGACACAAGATAACA
CACACCCTGGACCAATTTTTAATGCTCGATCACGCCACGACGAAGAGAAC
GTATAAATCAAACGAAACATTTTCGAAAAGATTCCGACGAGACAGCGTCA
ACGCCACCGTTTTCTGCGCCGTCACTCTTTCTGCTGTCAAAAAATCGAGA
TTCGAAAATCGGCCCAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16569:977..2145+

>mRNA_Ecto-sp13_S_contig16569.4717.1 ID=mRNA_Ecto-sp13_S_contig16569.4717.1|Name=mRNA_Ecto-sp13_S_contig16569.4717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16569:977..2145+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGACGAGATCAGGTGAAGGTTTGCGTTCGAACAAGGCCTACGTCTAC
CTTTGCACAAGATGCCATCGTCATCGACAAGGAAGCACAGGTTCTTGAAA
AGCATATCTCTAAGCACCGAAATACTTCCTGTTCGAGAAGTACCACACAC
AGTCCAAGGGGGTGTATTCGAAGCTTCAAGTACACACAGGTGGTAAATGA
TGGAGTAGGAGGTGAAGCGCAGCCCAGCACCTAA
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