mRNA_Ecto-sp13_S_contig16568.4716.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16568.4716.1
Unique NamemRNA_Ecto-sp13_S_contig16568.4716.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16568.4716.1 vs. uniprot
Match: D7FLR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR8_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.590e-33
Identity = 74/102 (72.55%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:  388 MMVMAMNGDRSGXXXXXXXXXXXXXXXXXXEEYNDGTCGDRNCAFCCGREQRQSNYSTSCRLDGDEDDSGGPGASLGGVSSSVCTASTGTMSWYTQDRGSYE 693
            MM+MAMNGDRSG           XXXXXXX     GTCGDR C FC GRE  Q NYSTSC+LDGDEDD GGPGASLGGVSSSVCTASTGTMSWYTQ+RG Y+
Sbjct:    2 MMMMAMNGDRSGDHCENFDDENNXXXXXXX-----GTCGDRYCTFCSGREHGQRNYSTSCQLDGDEDDRGGPGASLGGVSSSVCTASTGTMSWYTQNRGYYQ 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16568.4716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLR8_ECTSI1.590e-3372.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16568contigEcto-sp13_S_contig16568:455..3807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size693
Hectar predicted targeting categoryother localisation
Exons3
Cds size693
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.8853583-CDS-Ecto-sp13_S_contig16568:454..5811681462869.8853583-CDS-Ecto-sp13_S_contig16568:454..581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16568 455..581 -
1681462869.895337-CDS-Ecto-sp13_S_contig16568:862..13511681462869.895337-CDS-Ecto-sp13_S_contig16568:862..1351Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16568 863..1351 -
1681462869.9047794-CDS-Ecto-sp13_S_contig16568:3730..38071681462869.9047794-CDS-Ecto-sp13_S_contig16568:3730..3807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16568 3731..3807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16568.4716.1prot_Ecto-sp13_S_contig16568.4716.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16568 455..3807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16568.4716.1

>prot_Ecto-sp13_S_contig16568.4716.1 ID=prot_Ecto-sp13_S_contig16568.4716.1|Name=mRNA_Ecto-sp13_S_contig16568.4716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=231bp
KIEGQVTRGSITIMTWPQDEHRVGSRCNSEQCMGRTVAQEHCRVCQQQLE
QQAYHEEERQYQQLLEQRYRSSLPRQQHQQHQHQHQQELLRRHQQQQQQL
QQHQQHQQQQELLRRHQQQRQQQQQHQQQMMVMAMNGDRSGDRYENFDDN
DHDDDHDDEEEYNDGTCGDRNCAFCCGREQRQSNYSTSCRLDGDEDDSGG
PGASLGGVSSSVCTASTGTMSWYTQDRGSYE
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mRNA from alignment at Ecto-sp13_S_contig16568:455..3807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16568.4716.1 ID=mRNA_Ecto-sp13_S_contig16568.4716.1|Name=mRNA_Ecto-sp13_S_contig16568.4716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16568:455..3807- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGATCGAAGGTCAAGTGACGCGTGGATCCATCACAATCATGACGTGGCC
GCAGGACGAACACCGTGTGGGTAGCAGGTGCGCGTGCGTACGTCCGGGCA
CATTTGTTTTGCAGAGCCGGGCCGTCGTTGTCAGCGCAAAAGCGGCGTAT
TTGTACACCCTTCGCTCCAAGTGCCAAACGACATCTACATAGATATACAT
TCGTACGTACAGCAGTAGGCAAATCGGTATCCGTGCAAGATGTGCAAAAT
TCTCATGTTCCGATTGCAGCTGCAACAGCAGCAGCAGCAGCAGCATCAGT
CTCAGTGACCAGTCTGCTGCCTGTTGCTATTTCTGTTGTTGTCTTCACGG
GAAAAACTGTCCGGGCGCTCTGCCGTACCTTCTCTGCTGTACGCGGTCGT
AGTAAATAGCTGACACCCCGTTGACAAAAAAAACGGTCAGGTTGTCTGGT
GGATGGATCGGGTCGTTCGAAAAAGCGCGTGCCACATAGTCTACTGCTGT
AGGGCGGACAAGTTTCACGTCCTGCATCCCAAAAAAAACTGCTTCCGTGC
AACGCTCCGTAAGCTGCTACATTTGCATCGGACATCGGATCGACCGTGTA
CAGCAGCATGGGTGCTGGCCGGCTGTTCGTTCAAGCGCTTCGCTTCCACA
ATCAGAGCTCTTCCCCCCCCTTCCTCCACAGTTTTTTGGTTTTTTCGACT
CGGACTTGGATGACAGCTGTAATTTGACGAGACGCCAGTACATCAGTCTG
CTGTAGGATAGCAGTGGGGGTATGCGTGTTTCTGTGTTGAGGGCACTTCA
TGGACGACTACTACGGACGCAATAACCAGGATCTGTGACTGCCAATCCAT
CGCCAGTCGAGAAATCTACAGAAAGTACAGCGATAGGCTATCATTGGAAA
AAACATTCAACACACGTTTCACACTGTAGGCTATTGCTTTTTTGTACCCG
TTTGAAACAGTTATTACCGTGCGAAAGAATGTGTCTACAGTGAGTGGGGG
TTGAGGGACGAATTTTTCCTGGATGATACATGGTTTGCTGAACGCAGTAG
AATCTGCTGAGGTCTGAAGTCTTTGTACTGAAAAAGCAGCGATGATGAGG
TACAGCATCAATATCCCTTGCAGGTAGTTTGCTCCATTGCTCCATCACAG
GTGAACCGCAGAAAATTCCCGGGAGCAACCCTCCGTTTTTTCGTGTGCTA
CGCATTCTTTATTCTACCACGCCATCCTACAGGAACACGAGGCAAGCAAG
TGTATATCAACAACTTGCTGGGTGTTGGGCTATCTGCAATTAATTTCTAC
TCTAACAAAGGATGATGTGATGTGCACAGATCCAACGATGGGGAGAATGT
GTGACCCGATCCAAGTCACTGACTGACCGTTGTCTTTGCGGAAGATGATG
AGTGAAGTCTTCGTCTCACCCTTTGAGAACGCCCTCGCTCCGCCATGTCA
ACAGCCCACCTAGAAAAAAAAAAAAAACACACACACACACACACACACAC
ACCGGCGATACGCAACATACATGCAGAGTCAGAATTCCTTGTAAAGTATT
TTTTTCCATTGTTTCATGCGTCCCTGATGGCAATTCACAGGATAATCCAA
CGCGCGCACCCGAGCAACTTGTTTTTACTGTTTGTCGTTGTGAGGTGTCG
CTGCGGTTGTCTTTTTTTTATTTCGTACCCTTTCCGTCGACTGCAAGTCC
GGCACCTTCCTCTTACAAACACAGGACTTGCACGTACGTACGTGCTGCAC
ATGTGTAGAATATACATACATGCCGGTGCCCACCGTCAAGGTGGTGCATG
GCACCGCCCACTGTACTCACCACGCATGGGTTGACACTGGCGGCCCTTGC
CCGTTGAAAAGATGACACAATTAAATCTGCGTGACCACCAGACGAAAGAG
AGAACACATAAAATGTGAAAAATGAACCAGGACGTGGTGGTGGCAGTTCG
GTCCTGCATGAAATTGAGCTTTCCTTCTTCTCCTCACATACTACAAATAT
TAGCTGCAGTTTTGAACTTTTTGTTTAATTTTGTTTTCGCTGGAAAATGT
TCGTGGTTACATGTATGTGCCGTCTCCTCCCATCTGCTTTTTTTGTGTGT
GTGTGTTTCTCGAGTGATGCACACCGCACGATTTTTCTCCCCCAGAAACA
GTAGCTGTTCCTGCTCACTTTGTTCGATCTTCATCGATAAGATAAGAAAA
TATAGAGAGAAGAAGAAGGCGTTTCGTGGGCGGTGTGCACACACACGTGT
TTTTTGTTGCTTCCGCCTTGCTGACTCTGTCGCATTCTGCTATACGCCGG
AGATGCGCTGCCTGCTGTGGGGTATCTCCAGCGTCGAAAGGCCCCCAGGC
CGCGGCTGCCTTCTCATTGCCGTTCTGACGGCGTGGCCTACACCGGCAAT
GGACACTAGCATTGCTGACTCATAACCCACACGCTGCAACGCGCTCCTTT
CCTCAGGTGCAACAGCGAGCAGTGCATGGGGAGGACGGTAGCACAAGAGC
ATTGCCGGGTGTGCCAGCAGCAGCTTGAACAGCAAGCGTACCATGAGGAA
GAGCGGCAGTACCAGCAGCTCCTGGAGCAGCGATACCGCAGCAGCCTACC
ACGGCAGCAGCACCAGCAGCACCAGCACCAGCACCAGCAGGAGCTGCTAC
GACGTCACCAGCAACAGCAGCAGCAGCTGCAGCAGCACCAGCAGCACCAG
CAGCAGCAGGAGCTACTGCGACGTCATCAGCAACAGCGGCAACAACAACA
GCAGCACCAGCAGCAGATGATGGTGATGGCGATGAACGGTGATAGAAGCG
GAGACCGTTACGAAAACTTCGACGACAACGACCACGACGACGACCACGAC
GACGAAGAGGAGTACAACGACGGCACGTGCGGCGACCGAAACTGCGCCTT
CTGCTGCGGCAGGGAGCAACGCCAGAGCAACTACAGCACCTCATGGTGAG
GGTACGGCGGAGGAGGTGGTTTAGATAGTCGCAACAACAACAACAAAAAC
AACCACAACCACAACCACAACCACAACCACAACCACAAGAGAGTAGCAAC
AACCACAGCGGCTGGAGGCAAGGTGGATGAGGCTGCAGAAATTGAGGCTC
ATGAGTGTTGTTTCTTGTGCAAGTCACCTACAACCCCACAATAATGCAAA
CGGTCCAAAACACGCACCCTCACCCTCTGCACCAACCCGACTCCTCCCCC
CCGGACACGATGGCCACGTTTTCCAGTCGGCTGGACGGAGACGAAGATGA
CAGCGGGGGGCCCGGAGCATCATTAGGCGGCGTGTCTTCCAGCGTGTGCA
CGGCATCTACGGGTACCATGTCCTGGTACACACAAGATAGAGGGAGTTAC
GAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16568:455..3807-

>mRNA_Ecto-sp13_S_contig16568.4716.1 ID=mRNA_Ecto-sp13_S_contig16568.4716.1|Name=mRNA_Ecto-sp13_S_contig16568.4716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16568:455..3807- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGATCGAAGGTCAAGTGACGCGTGGATCCATCACAATCATGACGTGGCC
GCAGGACGAACACCGTGTGGGTAGCAGGTGCAACAGCGAGCAGTGCATGG
GGAGGACGGTAGCACAAGAGCATTGCCGGGTGTGCCAGCAGCAGCTTGAA
CAGCAAGCGTACCATGAGGAAGAGCGGCAGTACCAGCAGCTCCTGGAGCA
GCGATACCGCAGCAGCCTACCACGGCAGCAGCACCAGCAGCACCAGCACC
AGCACCAGCAGGAGCTGCTACGACGTCACCAGCAACAGCAGCAGCAGCTG
CAGCAGCACCAGCAGCACCAGCAGCAGCAGGAGCTACTGCGACGTCATCA
GCAACAGCGGCAACAACAACAGCAGCACCAGCAGCAGATGATGGTGATGG
CGATGAACGGTGATAGAAGCGGAGACCGTTACGAAAACTTCGACGACAAC
GACCACGACGACGACCACGACGACGAAGAGGAGTACAACGACGGCACGTG
CGGCGACCGAAACTGCGCCTTCTGCTGCGGCAGGGAGCAACGCCAGAGCA
ACTACAGCACCTCATGTCGGCTGGACGGAGACGAAGATGACAGCGGGGGG
CCCGGAGCATCATTAGGCGGCGTGTCTTCCAGCGTGTGCACGGCATCTAC
GGGTACCATGTCCTGGTACACACAAGATAGAGGGAGTTACGAA
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