mRNA_Ecto-sp13_S_contig16565.4715.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16565.4715.1
Unique NamemRNA_Ecto-sp13_S_contig16565.4715.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16565.4715.1 vs. uniprot
Match: A0A6H5KVA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVA5_9PHAE)

HSP 1 Score: 404 bits (1038), Expect = 3.530e-136
Identity = 206/213 (96.71%), Postives = 209/213 (98.12%), Query Frame = 1 
Query:    1 LFQAPRRGEQRGAVALSALVESCLSEARPRCARLLTDVEAAAAGEMPLLQFGTDAQGIVDEAVQSFLAKSSISQIDAPAAVLREKRGSLVSAVARELEPAFRAHARHLRGHFHEQFEEMFSCVLGGAADFDQSSRRMSKTIRQNFLEATKLAIPNTPGVADVWRLHWEAELIKLNEDMESRVQDRLSEGTWMLPPDPAEQAAAARKKTPWWKG 639
            L +APRRGEQ+GAVALSAL E CLSEARPRCARLLTDVEAAAAGEMPLLQFGTDAQGIVDEAVQSFLAKSS SQIDAPAAVLREKRGSLVSAVARELEPAFRAHARHLRGHFHEQFEEMFSCVLGGAADFDQSSRRMSKTIRQNFLEATKLAIPNTPGVADVWRLHWEAEL+KLNEDMESRVQDRLSEGTWMLPPDPAEQAAAARKKTPWWKG
Sbjct:  377 LAEAPRRGEQQGAVALSALAEFCLSEARPRCARLLTDVEAAAAGEMPLLQFGTDAQGIVDEAVQSFLAKSSRSQIDAPAAVLREKRGSLVSAVARELEPAFRAHARHLRGHFHEQFEEMFSCVLGGAADFDQSSRRMSKTIRQNFLEATKLAIPNTPGVADVWRLHWEAELVKLNEDMESRVQDRLSEGTWMLPPDPAEQAAAARKKTPWWKG 589
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BLAST of mRNA_Ecto-sp13_S_contig16565.4715.1 vs. uniprot
Match: D8LCC3_ECTSI (RHD3c, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC3_ECTSI)

HSP 1 Score: 397 bits (1020), Expect = 1.370e-133
Identity = 203/213 (95.31%), Postives = 207/213 (97.18%), Query Frame = 1 
Query:    1 LFQAPRRGEQRGAVALSALVESCLSEARPRCARLLTDVEAAAAGEMPLLQFGTDAQGIVDEAVQSFLAKSSISQIDAPAAVLREKRGSLVSAVARELEPAFRAHARHLRGHFHEQFEEMFSCVLGGAADFDQSSRRMSKTIRQNFLEATKLAIPNTPGVADVWRLHWEAELIKLNEDMESRVQDRLSEGTWMLPPDPAEQAAAARKKTPWWKG 639
            L +APRRGEQ+GAVALSAL ESCLSEARPRCARLLTDVEAA AGEMPLLQFGTDAQ IVDEAVQSFLAKSS SQIDAPAAVLREKRGSLVSAVARELEPAFRAHARHLRGHFHEQFEE+FSCVLGGAADFDQSSRRMSKTIRQNFLEATKLAIPNTPGVADVWRLHWEAEL+KLNEDMESRVQDRLSEGTWMLP DPAEQAAAARKKTPWWKG
Sbjct:  326 LAEAPRRGEQQGAVALSALAESCLSEARPRCARLLTDVEAAVAGEMPLLQFGTDAQEIVDEAVQSFLAKSSRSQIDAPAAVLREKRGSLVSAVARELEPAFRAHARHLRGHFHEQFEEVFSCVLGGAADFDQSSRRMSKTIRQNFLEATKLAIPNTPGVADVWRLHWEAELVKLNEDMESRVQDRLSEGTWMLPSDPAEQAAAARKKTPWWKG 538
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BLAST of mRNA_Ecto-sp13_S_contig16565.4715.1 vs. uniprot
Match: A0A4D9D2G8_9STRA (GB1/RHD3-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2G8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.960e-12
Identity = 62/221 (28.05%), Postives = 102/221 (46.15%), Query Frame = 1 
Query:   16 RRGEQRGAVALSALVESCLSEARPRCARLLTDVEAAAAGEMPLLQFGTDAQGIVDEAVQSFLAK--SSISQIDAPAAVLREKRGSLVSAVARELEPAFRAHARHLRGHFHEQFEEMFSCVLGGAADFDQSSRRMSKTIRQNFLEATKLAIPNT-----------PGVADVWRLHWEAELIKLNEDMESRVQDRLSEGTWMLPPDPAEQAAAARK-KTPWWK 636
            RR E+  A  L  +++SC+ EA     RL   VEAAA+ EMP+L++G DA  IV  A+QS  A+   S S    P +     +  L+  + R L P++R H   L   +  +F++ F  +       D+ ++ ++  +   F +A   A+P+T            G    W   WE  + +L ++M+  V DR  E   + P +   Q    R  +  WW+
Sbjct:  527 RREEEVQAFVLRKILDSCMEEAEQGIERLERKVEAAAS-EMPILEYGRDADAIVRAALQSLEARLPPSTSSHSTPES---SPQADLLKRLTRRLAPSYRQHVDALEDFYFGKFQDRFVGLFLPLRALDREAKFLTNDVATAFHKAAVTAVPSTFRMKEEKKNGGKGEGGDWS--WEGAMERLRDEMDVEVADRRMEVEVLFPGEEEVQGGKNRLLRASWWR 741
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16565.4715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KVA5_9PHAE3.530e-13696.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCC3_ECTSI1.370e-13395.31RHD3c, RHD3/Sey1 family GTPase involved in the ER-... [more]
A0A4D9D2G8_9STRA2.960e-1228.05GB1/RHD3-type G domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16565contigEcto-sp13_S_contig16565:491..3676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score400.6
Seed ortholog evalue4.6e-109
Seed eggNOG ortholog2880.D8LCC3
Model size642
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.GTP binding
EggNOG OGsKOG2203@1,KOG2203@2759
Ec32 ortholog descriptionRHD3c, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic
Ec32 orthologEc-14_005290.1
Cds size642
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16565.4715.1prot_Ecto-sp13_S_contig16565.4715.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16565 491..3676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.8035731-CDS-Ecto-sp13_S_contig16565:490..5951681462869.8035731-CDS-Ecto-sp13_S_contig16565:490..595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16565 491..595 -
1681462869.81467-CDS-Ecto-sp13_S_contig16565:1288..13751681462869.81467-CDS-Ecto-sp13_S_contig16565:1288..1375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16565 1289..1375 -
1681462869.8264835-CDS-Ecto-sp13_S_contig16565:1941..20651681462869.8264835-CDS-Ecto-sp13_S_contig16565:1941..2065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16565 1942..2065 -
1681462869.8374333-CDS-Ecto-sp13_S_contig16565:2578..26821681462869.8374333-CDS-Ecto-sp13_S_contig16565:2578..2682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16565 2579..2682 -
1681462869.8476937-CDS-Ecto-sp13_S_contig16565:3089..31421681462869.8476937-CDS-Ecto-sp13_S_contig16565:3089..3142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16565 3090..3142 -
1681462869.8583033-CDS-Ecto-sp13_S_contig16565:3507..36761681462869.8583033-CDS-Ecto-sp13_S_contig16565:3507..3676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16565 3508..3676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16565.4715.1

>prot_Ecto-sp13_S_contig16565.4715.1 ID=prot_Ecto-sp13_S_contig16565.4715.1|Name=mRNA_Ecto-sp13_S_contig16565.4715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp
LFQAPRRGEQRGAVALSALVESCLSEARPRCARLLTDVEAAAAGEMPLLQ
FGTDAQGIVDEAVQSFLAKSSISQIDAPAAVLREKRGSLVSAVARELEPA
FRAHARHLRGHFHEQFEEMFSCVLGGAADFDQSSRRMSKTIRQNFLEATK
LAIPNTPGVADVWRLHWEAELIKLNEDMESRVQDRLSEGTWMLPPDPAEQ
AAAARKKTPWWKG*
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mRNA from alignment at Ecto-sp13_S_contig16565:491..3676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16565.4715.1 ID=mRNA_Ecto-sp13_S_contig16565.4715.1|Name=mRNA_Ecto-sp13_S_contig16565.4715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16565:491..3676- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTTCCAGGCTCCTCGGCGAGGCGAGCAGCGGGGAGCCGTGGCCTTGTC
GGCGTTGGTGGAGTCCTGCCTGTCGGAAGCGCGTCCGAGGTGCGCGAGGC
TGCTGACCGACGTCGAGGCGGCAGCGGCGGGGGAGATGCCTCTGCTACAG
TTCGGTACCGACGCACAGGGTGAGTGGGCGAGGAGCCCCGGCAGAGGGGG
CAGGGTGCAAGTGCATGCGTTGCTGTTCCACTTCTTCCTGTTTGTGCACG
CCTCCTTAGATCGAACTCTTCTTGAAACCACTGCTGTTTTGCGCCGAGGA
GTTCGATTTCTCGGACCACCTCTGTTTGTTTTGTTGGTTGTGATGTTCTG
TTCACATTGAAACTCGTGATGCTTTGTTTTAGGTCGATCCACTCCTGTTC
TTCTGTCTGGCGCTGAGCTCAATCTATCGAACCATCTCTGTTTCTCGATC
GTAATGTTTTGTTTTGATTGAACCACCTCTGTTTGCTTGGTCGTGGTGTT
TTCGCGTTGTCCCGCGCTGTGTTGGGTTATGCAGGGATCGTAGACGAGGC
TGTGCAGTCATTCCTGGCGAAGTCTTCCATATCACAAGTGAGTTAACCTG
TGGCGCGGTGAAAGTGTTACCTGGCTTTAGAGAACTTGCGCGCGCGTCCC
AAAAACTTTTCCTCTGCGCGTTATCGTTGTTGAGGGTTTGATTTGCATGC
TGCAGCACATGAGCAGGGTTGGTTCCCAGTCGTGTTCAGCATCGGTGCCA
CCTCTGGAGGGATGAAGGGGTGCAGTCGATATTCGTATTCGCTGCCGGTG
GATGCAAGCATGAGGGATGTGCCCAGGGGACGTCGAGGTCTTCGTGCGGC
TGGCGCTGCTGCTGCTCTCCTTTATTTTCCACATGGATTGTATTTAGATT
TCTCTTCGTATGTTTGTTTTTTTATTGTAGGCATCTCGTCCTGTCCATAA
GTCGAGTCGAGTCGAATTTAATCCGCCGTTCGCGGCAGCCGCAGATCGAT
GCCCCCGCGGCGGTGCTCCGTGAGAAACGCGGATCGTTGGTATCGGCGGT
GGCGAGAGAGCTGGAGCCGGCCTTCAGGGCGCACGCGAGACATTTACGGT
GAGGCCCCTTCAATCGTGACAGCATGTGTTGAGGAGGAGGGCGGGTAGAG
TTGTGTCAGTCGGTAGGTTTTAGTCAAAAGCATGCCGAGACATTTACGGT
GAGGCCCCTTCAATCGTGACAGCATGTGTTGAGGAGGAGGGCGGGTAGAG
TTGTGTCAGTCGGTAGGTTTTAGTCAAAAGCATGCCGTCCAGTTTCGTAC
GTTATTGTTGGATAAACATCCGTATCTGAAACGGCGGAATTAGCACCGAA
AGCCAAACTTCTCGGGAAACTTCGGACAGGTGTAGTGTTGGGGGTTACAA
AACACTTTTTGGTAGACCAGAGACTAAAAAGGTGATGAGTGTGGCACTAC
TCAGACAATGACATGGCATCCTGTCCTTTACCGTCCTGTTTCCTTCTGAA
ACGAAGGCAACCGAAACGAAAAATAAAATATCAGCAACAACGACCCTTGG
TGCTTAAAGAAGCAATGCAACCAAACACGAAAAGTATCAACACTTGCTTT
TTATCCTTCAGAGGCCACTTTCACGAGCAGTTCGAGGAGATGTTTTCCTG
CGTGCTGGGGGGAGCGGCGGACTTCGACCAATCGTCTCGACGGATGTCCA
AGACCATTAGACAAAATTTCCTCGAGGCCACGAAGGTATTGGGACAGACG
AGAGAAGAATTGATAGAGAGAGAGATGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGCAACAGAGAGCATCCCCATCTTTTTTTTCTGCCGGCGTT
GATGATGATATTTCCTTCGCTTGGCCATGCTTGTACGGTTCCTCGGTTTT
CCCAGCCCGATGATGGCCACGAGGTAGGTCGGAAGGCTTCTCTACTTACT
CCTCTCGTTTCAGCTCGCTAGCTTGTTGAAAAGGCGCGGGGGGTAAAGAC
GAAAATAGACGTTTGTACATACCTCTGGCGCGTAGTTTGTTCTGTTTGTG
TCGTGCTTAGAAGGCCTTTGTACATACCGCTCGCGCTTTTTCCGGCAGTC
GGTTTTTGTCCCGTCGTTGCTGCAGATTCTGTCCCAGTGTCGAGTAGTCG
GCGGCATTCATAGTCTCGTATCCCTATCTCTGTTTTTGTCCCGCACTTCT
GCATTGCGGGGATTATTTTGCCGCCGCGATTTGTCCGACCTCTCTCCCGT
GGCTTTTGTTTCCGCTGGTTTCGCTATCATCACCAATTTTGTGTTTTGCA
GCTAGCGATTCCGAACACACCCGGAGTGGCAGACGTGTGGCGTTTGCATT
GGGAGGCGGAGCTGATTAAGCTTAACGAGGACATGGAGGTGAGACTGAGC
GACAGGACATACGCGCTTGGGCACGACGGAAGGGTTGTTGAAACCCTTGT
CGCTACGCTGGTATTCGATTTGTAAAAACGCTATTTCACGCCCCTCGGCT
GCGTTGCTATTGTGCCTCTCGATGTGCGTCGTGTTTGCAAAAGCCTGTTT
TTTCGCTACAGGGGTCTGTCTGCCTGGGAGGGATTATTTTGGGCCACGTG
TCCTCAACAGATCCGTGGTTATTTGCTCGCAAGCGCGTTTGTCTTTGATC
CCAGAGAGGATCTCCTGCTGTTGCAGTATGTTGTACTCGGTACTGTTGAT
GAAAAAGGACTTTCCGTCCTTGTTTTGCAACAAGCTCTCGCAAAGCCTCT
TGCGTATAGGCCGCAACAACTCTACACGGCACATAAGATCGTGACAGTTG
TAAGTGGCCTACAGACTCCCCCCGCGTGCGGCCTTCTGACGCCGTGTGTG
TCGTGTGGTACAGCAACCAAGCGTTCCTTGTGGCCCAATCCTGACAGGAG
CTTCGCTGTCCAAGAGAGGTAACGGCACATGCAAGTTCGTGGGTAGGAGC
ATCATTTTCACGCGTTTCTCGCCTGCGTCTCCCCCTGCCCCCTTCGTCCC
CCCCACCCTGGCTTCCTCGCGACCGGGCGGGCCGGCGGCCCCCCTTGCCT
CTCTCACGTGATTAAATGTAATGTGATGTAGAGCCGTGTGCAAGATCGTC
TGTCGGAGGGCACGTGGATGTTGCCGCCGGACCCGGCAGAGCAGGCAGCG
GCGGCGAGGAAGAAGACGCCGTGGTGGAAAGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16565:491..3676-

>mRNA_Ecto-sp13_S_contig16565.4715.1 ID=mRNA_Ecto-sp13_S_contig16565.4715.1|Name=mRNA_Ecto-sp13_S_contig16565.4715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16565:491..3676- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTTCCAGGCTCCTCGGCGAGGCGAGCAGCGGGGAGCCGTGGCCTTGTC
GGCGTTGGTGGAGTCCTGCCTGTCGGAAGCGCGTCCGAGGTGCGCGAGGC
TGCTGACCGACGTCGAGGCGGCAGCGGCGGGGGAGATGCCTCTGCTACAG
TTCGGTACCGACGCACAGGGGATCGTAGACGAGGCTGTGCAGTCATTCCT
GGCGAAGTCTTCCATATCACAAATCGATGCCCCCGCGGCGGTGCTCCGTG
AGAAACGCGGATCGTTGGTATCGGCGGTGGCGAGAGAGCTGGAGCCGGCC
TTCAGGGCGCACGCGAGACATTTACGAGGCCACTTTCACGAGCAGTTCGA
GGAGATGTTTTCCTGCGTGCTGGGGGGAGCGGCGGACTTCGACCAATCGT
CTCGACGGATGTCCAAGACCATTAGACAAAATTTCCTCGAGGCCACGAAG
CTAGCGATTCCGAACACACCCGGAGTGGCAGACGTGTGGCGTTTGCATTG
GGAGGCGGAGCTGATTAAGCTTAACGAGGACATGGAGAGCCGTGTGCAAG
ATCGTCTGTCGGAGGGCACGTGGATGTTGCCGCCGGACCCGGCAGAGCAG
GCAGCGGCGGCGAGGAAGAAGACGCCGTGGTGGAAAGGGTGA
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