mRNA_Ecto-sp13_S_contig16564.4714.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16564.4714.1 vs. uniprot
Match: A0A6H5JPG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPG3_9PHAE) HSP 1 Score: 182 bits (462), Expect = 8.120e-52 Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 1
Query: 1 VVVADVHGDERLEMLLADSSGAVVCVKHDGKECWNKALSGSTTSMLTLGDVDGDGALDVVAGVTTAEGSAEVWALSAESGLPLPNYPVALRNR 279
VVVADVHGDERLEMLLADSSGAVVCVKHDGKECWN LSGSTTSMLTLGDVDGDGALDVVAGVTTAEGSAEVWALSAESGLPLPNYPVALRNR
Sbjct: 423 VVVADVHGDERLEMLLADSSGAVVCVKHDGKECWNTVLSGSTTSMLTLGDVDGDGALDVVAGVTTAEGSAEVWALSAESGLPLPNYPVALRNR 515
BLAST of mRNA_Ecto-sp13_S_contig16564.4714.1 vs. uniprot
Match: A0A812SWE3_SYMMI (DEX1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SWE3_SYMMI) HSP 1 Score: 73.9 bits (180), Expect = 7.400e-15 Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = 1
Query: 1 VVVADVHGDERLEMLLADSSGAVVCVKHDGKECWNKALSGSTTSMLTLGDVDGDGALDVVAGVTTAEGSAEVWALSAESGLPLPNYPVAL 270
VVVADV G LE+++ D G +VCV DG W+ LSG T+GD+DGDG LDVV V +G ++A+ ++G L YP AL
Sbjct: 10 VVVADVRGGPDLEIIVGDLGGNLVCVNIDGDVLWDARLSGRIYQAPTVGDIDGDGTLDVVVAVAAIDGY-HIYAVRGDTGQILSGYPFAL 98
BLAST of mRNA_Ecto-sp13_S_contig16564.4714.1 vs. uniprot
Match: A0A7S3HBI1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBI1_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.840e-14 Identity = 41/92 (44.57%), Postives = 53/92 (57.61%), Query Frame = 1
Query: 1 VVVADVHGDERLEMLLADSSGAVVCVKHDGKECWNKALSGSTTSMLTLGDVDGDGALDVVAGVTTAEGSAEVWALSAESGLPLPNYPVALRN 276
V VADV GD LEM++ D G V V G W+ LSG+ T+GDVDGDG +DVV T + ++AL ++G LP YP+AL N
Sbjct: 492 VSVADVAGDRDLEMIVLDMGGTVAVVNLKGDILWDAHLSGTLPFPATVGDVDGDGQVDVVVVAATEGKGSHIYALRGDTGAVLPGYPIALPN 583
BLAST of mRNA_Ecto-sp13_S_contig16564.4714.1 vs. uniprot
Match: D2VEQ1_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VEQ1_NAEGR) HSP 1 Score: 75.9 bits (185), Expect = 5.240e-14 Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 1 VVVADVHGDERLEMLLADSSGAVVCVKHDGKECWNKALSGSTTSMLTLGDVDGDGALDVVAGVTTAEGSAEVWALSAESGLPLPNYPV 264
V+ D++ D +E+ D + +VC GKE W++ LSGS T+GDVDGDG LD+V G +T +WA+S E+G LP++PV
Sbjct: 436 VIAEDINQDGYIEICAVDFNSNLVCFDGKGKEIWSQRLSGSAAQAPTVGDVDGDGKLDLVVGTSTGH----IWAVSGETGKVLPHFPV 519
BLAST of mRNA_Ecto-sp13_S_contig16564.4714.1 vs. uniprot
Match: A0A7S0TK69_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TK69_HEMAN) HSP 1 Score: 75.5 bits (184), Expect = 6.090e-14 Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 1 VVVADVHGDERLEMLLADSSGAVVCVKHDGKECWNKALSGSTTSMLTLGDVDGDGALDVVAGVTTAEGSAEVWALSAESGLPLPNYPV 264
V VADV+ D RLE++ +D+ + DGKE W + +SG ++ T+GDVDGDG +DVV T S VWAL+ ++G LP +PV
Sbjct: 296 VGVADVNDDGRLELIASDNRHNIAAFSSDGKELWERHVSGFSSQGPTIGDVDGDGVVDVVVATT----SGHVWALNGKNGDTLPGFPV 379
BLAST of mRNA_Ecto-sp13_S_contig16564.4714.1 vs. uniprot
Match: A0A7S1EHG6_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EHG6_HEMAN) HSP 1 Score: 75.5 bits (184), Expect = 7.100e-14 Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 1 VVVADVHGDERLEMLLADSSGAVVCVKHDGKECWNKALSGSTTSMLTLGDVDGDGALDVVAGVTTAEGSAEVWALSAESGLPLPNYPV 264
V VADV+ D RLE++ +D+ + DGKE W + +SG ++ T+GDVDGDG +DVV T S VWAL+ ++G LP +PV
Sbjct: 327 VGVADVNDDGRLELIASDNRHNIAAFSSDGKELWERHVSGFSSQGPTIGDVDGDGVVDVVVATT----SGHVWALNGKNGDTLPGFPV 410
BLAST of mRNA_Ecto-sp13_S_contig16564.4714.1 vs. uniprot
Match: A0A7S2V306_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V306_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 2.720e-13 Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1
Query: 1 VVVADVHGDERLEMLLADSSGAVVCVKHDGKECWNKALSGSTTSMLTLGDVDGDGALDVVAGVTTAEG 204
V +ADV+GD LEM++AD+ G + C+ +G W+K +SGS + +GDVDGDG LDV TT +G
Sbjct: 39 VALADVYGDGDLEMIVADTQGNLYCISGEGSVIWDKRISGSARNTPVVGDVDGDGQLDVALATTTEDG 106
BLAST of mRNA_Ecto-sp13_S_contig16564.4714.1 vs. uniprot
Match: A0A7S0VW01_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VW01_9CRYP) HSP 1 Score: 71.2 bits (173), Expect = 2.160e-12 Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 1 VVVADVHGDERLEMLLADSSGAVVCVKHDGKECWNKALSGSTTSMLTLGDVDGDGALDVVAGVTTAEGSAEVWALSAESGLPLPNYPV 264
V VADV+ D RLE++ +D+ V GKE W + +SG ++ T+GD+DGDG +DVV T S VWAL+ ++G LP +PV
Sbjct: 248 VGVADVNDDGRLELVASDNRHNVAAFDAGGKELWERHVSGFSSQGPTIGDIDGDGVVDVVLATT----SGHVWALNGKNGDSLPGFPV 331
BLAST of mRNA_Ecto-sp13_S_contig16564.4714.1 vs. uniprot
Match: F4Q366_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q366_CAVFA) HSP 1 Score: 70.9 bits (172), Expect = 3.040e-12 Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 1
Query: 1 VVVADVHGDERLEMLLADSSGAVVCVKHDGKECWNKALSGSTTSMLTLGDVDGDGALDVVAGVTTAEGSAEVWALSAESGLPLPNYPVALRN 276
VVV D++ D +E+++ADS+G +VC + G E W +G T S +++GD++GDG LDVV G S ++A S +SG L ++P+ ++
Sbjct: 569 VVVEDLNKDGNVEIIVADSNGNLVCFSNTGDELWENRFAGMTESHVSIGDINGDGILDVVLGSM----SGAIYAWSGDSGKELVDFPIKTKS 656
BLAST of mRNA_Ecto-sp13_S_contig16564.4714.1 vs. uniprot
Match: UPI000711CC96 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711CC96) HSP 1 Score: 69.7 bits (169), Expect = 7.510e-12 Identity = 32/87 (36.78%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 4 VVADVHGDERLEMLLADSSGAVVCVKHDGKECWNKALSGSTTSMLTLGDVDGDGALDVVAGVTTAEGSAEVWALSAESGLPLPNYPV 264
V AD+ D LE+++ D +G + + + G++ W+++LSG + +T+GD+DGDG LDVVA T G ++W L E+G + +P+
Sbjct: 255 VCADIAKDSYLEIIVGDKNGVLAVLDYQGEDIWSRSLSGPLSQSVTIGDIDGDGTLDVVA--VTDNG--DIWVLDGETGKDVKRFPI 337 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16564.4714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16564.4714.1 >prot_Ecto-sp13_S_contig16564.4714.1 ID=prot_Ecto-sp13_S_contig16564.4714.1|Name=mRNA_Ecto-sp13_S_contig16564.4714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp VVVADVHGDERLEMLLADSSGAVVCVKHDGKECWNKALSGSTTSMLTLGDback to top mRNA from alignment at Ecto-sp13_S_contig16564:519..1285- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16564.4714.1 ID=mRNA_Ecto-sp13_S_contig16564.4714.1|Name=mRNA_Ecto-sp13_S_contig16564.4714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=767bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16564:519..1285- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16564:519..1285- >mRNA_Ecto-sp13_S_contig16564.4714.1 ID=mRNA_Ecto-sp13_S_contig16564.4714.1|Name=mRNA_Ecto-sp13_S_contig16564.4714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16564:519..1285- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |