mRNA_Ecto-sp13_S_contig16555.4710.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16555.4710.1 vs. uniprot
Match: D7FVQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ7_ECTSI) HSP 1 Score: 223 bits (567), Expect = 2.030e-73 Identity = 109/116 (93.97%), Postives = 112/116 (96.55%), Query Frame = 1
Query: 1 SQDGVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKEDGHVSFSIDSFPDMDPEALEHFYIQKVDQHRQSRDMFFSKIARETDGMTNPETSDPAKLAVAVMDYDPHELLVLLNT 348
++DGVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKEDGH+SFSIDSFPDMDP ALEHFYIQKVDQHRQSRDMFFSKI RETD M NPETSDPAKLAVAVMDYDPHELLVLLNT
Sbjct: 6 NKDGVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKEDGHISFSIDSFPDMDPVALEHFYIQKVDQHRQSRDMFFSKIDRETDEMANPETSDPAKLAVAVMDYDPHELLVLLNT 121
BLAST of mRNA_Ecto-sp13_S_contig16555.4710.1 vs. uniprot
Match: A0A7S2WVW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVW5_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.450e-23 Identity = 49/115 (42.61%), Postives = 79/115 (68.70%), Query Frame = 1
Query: 4 QDGVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKEDGHVSFSIDSFPDMDPEALEHFYIQKVDQHRQSRDMFFSKIARETD-GMTNPETSDPAKLAVAVMDYDPHELLVLLN 345
QDGVFH+NT L L+L SP+F+SG E+FEV+VM+HK+DG SF+ID FP+M+ +A+E F+I+KV++HR RD F + R+ + G + E + K ++ + ++L +++
Sbjct: 53 QDGVFHFNTHLNLELTSPHFASGAASEKFEVMVMKHKDDGSYSFAIDDFPEMNEDAIEEFWIRKVERHRLLRDEAFRLMERDLESGQSAEEIAAKFKALHSIPAAEMRQVLEIID 167
BLAST of mRNA_Ecto-sp13_S_contig16555.4710.1 vs. uniprot
Match: A0A7S2CNQ6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CNQ6_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 4.680e-23 Identity = 47/96 (48.96%), Postives = 68/96 (70.83%), Query Frame = 1
Query: 1 SQDGVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKEDGHVSFSIDSFPDMDPEALEHFYIQKVDQHRQSRDMFFSKIARETDGMTNPETSDPA 288
+QDG+FH NT L++ +SPYF SG E +EV+VM HKEDG SF+ID FP+MD +A+E F+IQKV++HR+SR+ F ++ + + E DP+
Sbjct: 43 TQDGIFHMNTFLSMQFSSPYFKSGALVEVYEVMVMRHKEDGTFSFAIDDFPEMDDDAIERFWIQKVEEHRRSREEAFRQMELDILTEMDNEGHDPS 138
BLAST of mRNA_Ecto-sp13_S_contig16555.4710.1 vs. uniprot
Match: A0A7S2CU23_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CU23_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 2.920e-22 Identity = 45/80 (56.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 1 SQDGVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKEDGHVSFSIDSFPDMDPEALEHFYIQKVDQHRQSRDMFFSKI 240
SQ+GVFH+NT LTL+LA P+F SG E ++V+VM H EDG SF+ID FP+MD +A+E F+IQKV+QHR+ R+ F ++
Sbjct: 105 SQEGVFHHNTFLTLELACPHFKSGHDAETYDVMVMRHLEDGTYSFAIDEFPEMDEDAIETFWIQKVEQHRRYREETFRQM 184
BLAST of mRNA_Ecto-sp13_S_contig16555.4710.1 vs. uniprot
Match: A0A7S1G8R3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G8R3_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.410e-21 Identity = 43/80 (53.75%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 1 SQDGVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKEDGHVSFSIDSFPDMDPEALEHFYIQKVDQHRQSRDMFFSKI 240
+QDG+FH+NT LTL LASP+F+ G E R +V+VM+ EDG +SF+ID FP+MD +A+E F+I+KV+ HR+ R+ F+ I
Sbjct: 16 TQDGIFHHNTFLTLVLASPHFAGGVPESRHQVMVMKALEDGVLSFAIDEFPEMDEDAIEAFWIEKVEAHRRFREASFAAI 95
BLAST of mRNA_Ecto-sp13_S_contig16555.4710.1 vs. uniprot
Match: A0A7S3H248_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H248_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 5.500e-20 Identity = 40/82 (48.78%), Postives = 60/82 (73.17%), Query Frame = 1
Query: 4 QDGVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKEDGHVSFSIDSFPDMDPEALEHFYIQKVDQHRQSRDMFFSKIARE 249
QDG+FH+NTLLTL+L SP+F S + E ++++VM HKEDG + +ID FP MD +A+E FYI+K++ R+ R+ F ++ E
Sbjct: 73 QDGIFHFNTLLTLELESPHFKSKKSVEEYKMIVMLHKEDGVKALAIDEFPVMDEDAIEEFYIRKIENRRKQREESFRRLEIE 154
BLAST of mRNA_Ecto-sp13_S_contig16555.4710.1 vs. uniprot
Match: A0A835ZC54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC54_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 2.260e-19 Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 10 GVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKEDGHVSFSIDSFPDMDPEALEHFYIQKVDQHRQSRDMFFSKIARETD 255
GV+H NT LTL LASP+F G EE FEV+VM+HK DGH +F+I FP M A+E FY+QKVD R+ RD ++ RE +
Sbjct: 47 GVYHDNTFLTLVLASPHFDGGSAEEEFEVMVMQHKTDGHRNFAISEFPAMAAGAIEQFYMQKVDADRKLRDAALQELDREAE 128
BLAST of mRNA_Ecto-sp13_S_contig16555.4710.1 vs. uniprot
Match: A0A7S3XTW5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTW5_HETAK) HSP 1 Score: 83.2 bits (204), Expect = 9.190e-18 Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 4 QDGVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKEDGHVSFSIDSFPDMDPEALEHFYIQKVDQHRQSRDMFFSKIARETDG-----MTNPETSDPAKLAVAVMDY 315
Q+G++H N L L L+S +F+S ++ E F +VM+H EDG SF+ID FP D EA+E FYI KV++HR+ R+ F ++ E D + E D K+ V+V +
Sbjct: 25 QEGIYHENIYLELSLSSIHFASRKESETFNFIVMKHLEDGVRSFAIDRFPYFDDEAIEEFYIGKVEKHRRWREKVFQELLAEPDDEEYRRLMEGEPDDVPKVQVSVSGF 133
BLAST of mRNA_Ecto-sp13_S_contig16555.4710.1 vs. uniprot
Match: A0A1V9ZMN4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMN4_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.300e-17 Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 1 SQDGVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKE-DGHVSFSIDSFPDMDPEALEHFYIQKVDQHRQSRDMFFSKIARETDGMTNPETSDPAKLAVAVMD 312
+Q+G FHYNT LTL+LASP+F SG+ E +E+VVME + D SF+ID+FP+MD +A+E F+I+ V+ RQ R F+ + ++ + A L V + D
Sbjct: 72 TQEGDFHYNTYLTLELASPHFKSGQPVEPYEIVVMESLDADRRKSFAIDNFPEMDDDAIEAFWIEMVEHRRQQRREIFAAWSAASEPVETEALPTRASLHVQLKD 176
BLAST of mRNA_Ecto-sp13_S_contig16555.4710.1 vs. uniprot
Match: A0A482UW55_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UW55_9ARCH) HSP 1 Score: 73.9 bits (180), Expect = 7.400e-15 Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 7 DGVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKEDGHVSFSIDSFPDMDPEALEHFYIQKVDQHRQSRD 222
DG++H N L L+L S +F S E F +VVM+HK++ + +ID FP MD +A+E FYIQKV++HR++R+
Sbjct: 25 DGIYHNNVALELELRSQHFKSKLDTEVFNMVVMKHKKEDITTLAIDEFPVMDDDAIEDFYIQKVEEHRENRE 96 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16555.4710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16555.4710.1 >prot_Ecto-sp13_S_contig16555.4710.1 ID=prot_Ecto-sp13_S_contig16555.4710.1|Name=mRNA_Ecto-sp13_S_contig16555.4710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp SQDGVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKEDGHVSFSIDSFback to top mRNA from alignment at Ecto-sp13_S_contig16555:60..3543+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16555.4710.1 ID=mRNA_Ecto-sp13_S_contig16555.4710.1|Name=mRNA_Ecto-sp13_S_contig16555.4710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3484bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16555:60..3543+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16555:60..3543+ >mRNA_Ecto-sp13_S_contig16555.4710.1 ID=mRNA_Ecto-sp13_S_contig16555.4710.1|Name=mRNA_Ecto-sp13_S_contig16555.4710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16555:60..3543+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |