mRNA_Ecto-sp13_S_contig16554.4709.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16554.4709.1
Unique NamemRNA_Ecto-sp13_S_contig16554.4709.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16554.4709.1 vs. uniprot
Match: D7FN92_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN92_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 7.040e-38
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEK 222
            DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEK
Sbjct: 1170 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEK 1243          
BLAST of mRNA_Ecto-sp13_S_contig16554.4709.1 vs. uniprot
Match: A0A6H5KVP2_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP2_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 7.070e-38
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEK 222
            DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEK
Sbjct: 1300 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEK 1373          
BLAST of mRNA_Ecto-sp13_S_contig16554.4709.1 vs. uniprot
Match: A0A835ZBG5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.500e-32
Identity = 65/74 (87.84%), Postives = 66/74 (89.19%), Query Frame = 1
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEK 222
            DL  V DS+KYC FLLDAEVTDSAL ALSKEILSDKG LPVGEIGKLLQE TANA LSQTLKDQFGGLKKFLEK
Sbjct:  103 DLDKVWDSIKYCSFLLDAEVTDSALFALSKEILSDKGPLPVGEIGKLLQEFTANAGLSQTLKDQFGGLKKFLEK 176          
BLAST of mRNA_Ecto-sp13_S_contig16554.4709.1 vs. uniprot
Match: A0A7S3Y5A1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5A1_HETAK)

HSP 1 Score: 101 bits (251), Expect = 1.070e-25
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 1
Query:   22 SVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEK 222
            S++YC FLL AEVT SAL AL+ E+L ++G LPVGEIGKLLQEATANA+LS TLKDQFGGLKKFLEK
Sbjct:   23 SLRYCAFLLAAEVTASALRALAAEVLGNRGPLPVGEIGKLLQEATANAALSATLKDQFGGLKKFLEK 89          
BLAST of mRNA_Ecto-sp13_S_contig16554.4709.1 vs. uniprot
Match: A0A7S1CD26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD26_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.530e-23
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLE 219
            D  +V  SV+YC  LLDAEVT  ALLAL+ EIL  +G LPVGEIGKLLQEAT+N +LS  LK++FGGLKKFLE
Sbjct:    5 DAAAVEASVEYCGLLLDAEVTAPALLALTSEILWRRGRLPVGEIGKLLQEATSNPALSGALKERFGGLKKFLE 77          
BLAST of mRNA_Ecto-sp13_S_contig16554.4709.1 vs. uniprot
Match: A0A1V9YRJ5_9STRA (Radical SAM core domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YRJ5_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.310e-17
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLE 219
            D +S+R  V  C FLL   VT  A+ + + +IL++KG LP+GEIGK LQ+ATANA+LS  LK+QFGGLKKFLE
Sbjct:  858 DEESLRCQVLMCDFLLQGHVTPHAVFSKTVDILNEKGPLPIGEIGKCLQDATANATLSVALKEQFGGLKKFLE 930          
BLAST of mRNA_Ecto-sp13_S_contig16554.4709.1 vs. uniprot
Match: A0A1V9YQK8_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YQK8_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 8.450e-17
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLE 219
            D  ++R  V  C FLL   VT  A+   + +IL++KG LP+GEIGK LQ+ATAN +LS TLK+QFGGLKKFLE
Sbjct:  827 DEDALRGQVLVCDFLLQGHVTPHAVFTKTVDILNEKGPLPIGEIGKCLQDATANTALSVTLKEQFGGLKKFLE 899          
BLAST of mRNA_Ecto-sp13_S_contig16554.4709.1 vs. uniprot
Match: A0A6G0WDG1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDG1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.140e-16
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    7 QSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLE 219
            +S+R  V  C FLL+A VT  AL +++ EIL+++G LP+GEIGK LQ+ T+N++LS  LK++FGGLKKFLE
Sbjct:  723 ESLRHDVLVCDFLLNAHVTAPALYSMATEILAERGPLPIGEIGKCLQDITSNSTLSAVLKEKFGGLKKFLE 793          
BLAST of mRNA_Ecto-sp13_S_contig16554.4709.1 vs. uniprot
Match: A0A067CJD5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CJD5_SAPPC)

HSP 1 Score: 79.3 bits (194), Expect = 2.830e-16
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLE 219
            D  ++R  V  C FLL+  VT  A+   +  IL++KG LP+GEIGK LQ+ATAN++LS  LK+QFGGLKKFLE
Sbjct:   82 DEDALRCHVLMCDFLLNGHVTPHAVFTKTVAILNEKGPLPIGEIGKCLQDATANSTLSVALKEQFGGLKKFLE 154          
BLAST of mRNA_Ecto-sp13_S_contig16554.4709.1 vs. uniprot
Match: A0A7S2S0B6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0B6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.250e-16
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLE 219
            D + +   +++  F+L ++VT+ AL+ L++ IL + G +PVGEIGK+LQEAT+N SLS  LK+QFGGLKKFLE
Sbjct:  266 DRRGMDKCIQHAEFILGSQVTEEALVTLTQTILEEHGPVPVGEIGKMLQEATSNPSLSVVLKEQFGGLKKFLE 338          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16554.4709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FN92_ECTSI7.040e-38100.00Nucleotidyltransferase family protein n=1 Tax=Ecto... [more]
A0A6H5KVP2_9PHAE7.070e-38100.00PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A835ZBG5_9STRA3.500e-3287.84Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3Y5A1_HETAK1.070e-2577.61Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1CD26_9STRA5.530e-2368.49Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1V9YRJ5_9STRA3.310e-1758.90Radical SAM core domain-containing protein n=1 Tax... [more]
A0A1V9YQK8_9STRA8.450e-1757.53Major Facilitator Superfamily (MFS) n=1 Tax=Thraus... [more]
A0A6G0WDG1_9STRA1.140e-1656.34Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067CJD5_SAPPC2.830e-1656.16Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A7S2S0B6_9STRA6.250e-1653.42Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16554contigEcto-sp13_S_contig16554:83..647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score143.7
Seed ortholog evalue3.5e-32
Seed eggNOG ortholog2880.D7FN92
Model size222
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
Cds size222
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.4790895-CDS-Ecto-sp13_S_contig16554:82..1961681462869.4790895-CDS-Ecto-sp13_S_contig16554:82..196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16554 83..196 -
1681462869.4889321-CDS-Ecto-sp13_S_contig16554:539..6471681462869.4889321-CDS-Ecto-sp13_S_contig16554:539..647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16554 540..647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16554.4709.1prot_Ecto-sp13_S_contig16554.4709.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16554 83..647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16554.4709.1

>prot_Ecto-sp13_S_contig16554.4709.1 ID=prot_Ecto-sp13_S_contig16554.4709.1|Name=mRNA_Ecto-sp13_S_contig16554.4709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQE
ATANASLSQTLKDQFGGLKKFLEK
back to top

mRNA from alignment at Ecto-sp13_S_contig16554:83..647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16554.4709.1 ID=mRNA_Ecto-sp13_S_contig16554.4709.1|Name=mRNA_Ecto-sp13_S_contig16554.4709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=565bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16554:83..647- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTCCAGAGCGTGCGCGACTCTGTGAAGTACTGCTGCTTCCTCCTCGA CGCGGAGGTGACCGACAGCGCGCTGCTCGCTCTGTCCAAGGAGATTCTCT CGGACAAGGTGAGAAGAGACACACACAGATGGGAAGGCAGACAGGCAGAG ACCGACAGGCAGAGACAGACAGGCAGGCATACAGGCAGGCAGAGACAGAT TCAGATAGAGATAGCTGGCATTCGGTACAGGCGATCGTTAAGATAGAAAA GCAATGAATCCATATCGAGCGGAGGCTACCGATAGTTCCGCGATTTCCCG AGCAGCACACAGATTTCCCGGTGGATTTTCCTGTTTTTGATTTTTCGTAT GTGGTCGTGGGAAGTATCCGCCCATTGAACAAAGCGTACACAGAGCTGTG TCTCGCTTTGATGCTGTTTTTCGTGCCGAAACGTCAATTTCTTTTCCCCA GGGCTCTTTGCCGGTGGGCGAGATCGGCAAGCTCCTGCAGGAAGCCACGG CCAACGCCTCCCTTAGCCAAACCCTCAAGGACCAGTTTGGAGGCCTCAAG AAGTTCCTCGAGAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16554:83..647-

>mRNA_Ecto-sp13_S_contig16554.4709.1 ID=mRNA_Ecto-sp13_S_contig16554.4709.1|Name=mRNA_Ecto-sp13_S_contig16554.4709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16554:83..647- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTCCAGAGCGTGCGCGACTCTGTGAAGTACTGCTGCTTCCTCCTCGA
CGCGGAGGTGACCGACAGCGCGCTGCTCGCTCTGTCCAAGGAGATTCTCT
CGGACAAGGGCTCTTTGCCGGTGGGCGAGATCGGCAAGCTCCTGCAGGAA
GCCACGGCCAACGCCTCCCTTAGCCAAACCCTCAAGGACCAGTTTGGAGG
CCTCAAGAAGTTCCTCGAGAAG
back to top