mRNA_Ecto-sp13_S_contig16552.4708.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16552.4708.1 vs. uniprot
Match: A0A6H5KKV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV2_9PHAE) HSP 1 Score: 277 bits (709), Expect = 1.250e-87 Identity = 150/185 (81.08%), Postives = 153/185 (82.70%), Query Frame = 1
Query: 4 VMLRVFFFFATFGEALSQTAQAFIPGQLARERSIESAKKT--------------------------ARAAAAAVLILGVGVGSLNACVAGLVPLHLPHLFTNSLEVAAGMRSLTPLLSWSLLTHACVMGLEGILLARRRLGFLAGCYAVNTVVLVSFMQWVRTWPATRGLHGAWMGLLLLQIIRR 480
VMLRVFFFFATFGEALSQTAQAFIPGQLARERSI+SAKK AR VLILGVGVGS+NACVAGLVPLHLPHLFTNSLEVAAGMRSLTPLLSWSLLTHACVMGLEGILLARRRLGFLAGCYA+NTVVLVSFMQWVRTWPATRGLHGAWMGLLLLQIIRR
Sbjct: 392 VMLRVFFFFATFGEALSQTAQAFIPGQLARERSIKSAKKAXXXXXXXXXXDAAAAEDSSADPRLSPARTMMRKVLILGVGVGSVNACVAGLVPLHLPHLFTNSLEVAAGMRSLTPLLSWSLLTHACVMGLEGILLARRRLGFLAGCYALNTVVLVSFMQWVRTWPATRGLHGAWMGLLLLQIIRR 576
BLAST of mRNA_Ecto-sp13_S_contig16552.4708.1 vs. uniprot
Match: D7G808_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G808_ECTSI) HSP 1 Score: 192 bits (489), Expect = 1.520e-56 Identity = 111/145 (76.55%), Postives = 113/145 (77.93%), Query Frame = 1
Query: 4 VMLRVFFFFATFGEALSQTAQAFIPGQLARERSIESAKKT--------------------------ARAAAAAVLILGVGVGSLNACVAGLVPLHLPHLFTNSLEVAAGMRSLTPLLSWSLLTHACVMGLEGILLARRRLGFLAG 360
VMLRVFFFFATFGEALSQTAQAFIPGQLARERSI+SAKK AR VLILGVGVGSLNACVAGLVPLHLPHLFTNSLEVAAGMRSLTPLLSWSLLTHACVMGLEGILLA+RRLGFLAG
Sbjct: 297 VMLRVFFFFATFGEALSQTAQAFIPGQLARERSIKSAKKAXXXXXXXXXGDTAAAEDSSADPRLSPARTMMRKVLILGVGVGSLNACVAGLVPLHLPHLFTNSLEVAAGMRSLTPLLSWSLLTHACVMGLEGILLAQRRLGFLAG 441
BLAST of mRNA_Ecto-sp13_S_contig16552.4708.1 vs. uniprot
Match: W7TLJ7_9STRA (Dna-damage-inducible protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLJ7_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.500e-30 Identity = 72/159 (45.28%), Postives = 94/159 (59.12%), Query Frame = 1
Query: 1 QVMLRVFFFFATFGEALSQTAQAFIPGQLARERSIESAKKTARAAAAAVLILGVGVGSLNACVAGLVPLHLPHLFTNSLEVAAGMRSLTPLLSWSLLTHACVMGLEGILLARRRLGFLAGCYAVNTVVLVSFMQWVRTWPATRGLHGAWMGLLLLQIIR 477
QVMLR FFFF TFG++LS TAQAF+PG L + + K R ++ + +GVG LNA +AGL+P P LFT S + M + P LS LL HAC M LEG LLA R L FLA YA+NT++++ ++ R G+ G W LL Q+ R
Sbjct: 418 QVMLRCFFFFTTFGDSLSTTAQAFLPGFLVDDNKLAIGKVVRR-----LVSISLGVGGLNAMLAGLLPSFFPGLFTTSAAIVGQMHLIAPWLSLCLLAHACTMALEGTLLAERELRFLASSYAINTLLVLVGLR--RLQHVAAGIQGVWACLLYFQVSR 569
BLAST of mRNA_Ecto-sp13_S_contig16552.4708.1 vs. uniprot
Match: A0A835YQ91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ91_9STRA) HSP 1 Score: 118 bits (295), Expect = 2.050e-28 Identity = 75/164 (45.73%), Postives = 91/164 (55.49%), Query Frame = 1
Query: 7 MLRVFFFFATFGEALSQTAQAFIPGQLARERSIESAKKTA-------------------------RAAAAA-----------VLILGVGVGSLNACVAGLVPLHLPHLFTNSLEVAAGMRSLTPLLSWSLLTHACVMGLEGILLARRRLGFLAGCYAVNTVVLV 390
MLR+FFFF TFG++LSQ AQAF+PG +A +R+ +A + RA A A +L L G+G A AGLVPL LPHLFTN + MR L P+LSWSLL HA VMGLEGILLA+R L FLA Y VN ++ V
Sbjct: 245 MLRIFFFFTTFGDSLSQAAQAFLPGMMASDRAAAAAHRKXXXXXXXXXXRGANLNFNGDAPSAQRRAPAQAPVSAGNLMIRKLLTLAAGIGVCMALSAGLVPLRLPHLFTNDALITDQMRRLVPVLSWSLLVHASVMGLEGILLAKRELSFLAKTYLVNAIMAV 408
BLAST of mRNA_Ecto-sp13_S_contig16552.4708.1 vs. uniprot
Match: A0A7S0VFL6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VFL6_9CRYP) HSP 1 Score: 92.4 bits (228), Expect = 1.390e-20 Identity = 62/161 (38.51%), Postives = 89/161 (55.28%), Query Frame = 1
Query: 1 QVMLRVFFFFATFGEALSQTAQAFIPGQLARERSIESAKKTARAAAAAVLILGVGVGSLNACVAGLVPLHLPHLFTNSLEVAAGMRSLTPLLSWSLLTHACVMGLEGILLARRRLGFLAGCYAVNTVVLVSFMQWVRTWPATRG--LHGAWMGLLLLQIIR 477
QV+L++FFFF FG+++S TAQ F+P +A ++ RA A L + +G +++ +AG++P+ LFT V A MRS+TPLL SLL HA VM LEG+L A R +LA Y T++ S M R RG + W L Q++R
Sbjct: 12 QVVLQLFFFFCKFGDSVSSTAQTFLPAAIAA-----GDYRSVRATVARCLKMAFTLGLVDSLLAGIIPIFGASLFTTDAVVVAKMRSITPLLCTSLLFHATVMSLEGVLFACRSTVWLAVSYVSTTLLFTSAMYIARG----RGVPITVVWWALFTYQVVR 163
BLAST of mRNA_Ecto-sp13_S_contig16552.4708.1 vs. uniprot
Match: R1DI57_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DI57_EMIHU) HSP 1 Score: 86.7 bits (213), Expect = 8.560e-17 Identity = 61/162 (37.65%), Postives = 87/162 (53.70%), Query Frame = 1
Query: 1 QVMLRVFFFFATFGEALSQTAQAFIPGQL---ARERSIESAKKTARAAAAAVLILGVGVGSLNACVAGLVPLHLPHLFTNSLEVAAGMRSLTPLLSWSLLTHACVMGLEGILLARRRLGFLAGCYAVNTVVLVSFMQWVRTWPATRGLHGAWMGLLLLQIIR 477
QV+ VFF FG+A+SQTAQA++P L AR R + +K A + +L++ + +G + A V L +FT VAA M ++ PLL +L H M LEG+LL R+LGFLAG YA N +V +S + + GL W L Q++R
Sbjct: 356 QVVATVFFLGCKFGDAISQTAQAYLPACLPAAARMRPGGAPEKGAVELSRKLLLVSMLLGGAVSLAAVGVVLGCSGVFTQDAAVAAAMATVAPLLGVALSIHPATMCLEGLLLGGRQLGFLAGAYAANVLVFLSSLHAIAR--RALGLRYVWAALAAFQLVR 515
BLAST of mRNA_Ecto-sp13_S_contig16552.4708.1 vs. uniprot
Match: A0A7S4MVH8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MVH8_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 7.590e-16 Identity = 60/138 (43.48%), Postives = 80/138 (57.97%), Query Frame = 1
Query: 1 QVMLRVFFFFATFGEALSQTAQAFIPGQLARERSIESAKKTARAAAAAVLILGVGVGSLNACVAGLVPLHLPHLFTNSLEVAAGMRSLT-PLLSWSLLTHACVMGLEGILLARRRLGFLAGCYAVNTVVLVSFMQWVR 411
Q++L +FFF + F E +SQTAQ F+P + +K A A +A +L LGV VG+ ACVA +P P L TN V A +R L PL+ +LLT + EGILLARR LGFLA Y + T +L S + V+
Sbjct: 384 QIVLSLFFFVSPFLEVISQTAQTFLPQFFTHKDDGRYVRK-ADALSAWLLRLGVAVGAAVACVAASIPRFFPQLLTNDPGVQAAVRPLALPLMLGALLTAPVAVS-EGILLARRELGFLASVYVLTTALLPSVLFKVK 519
BLAST of mRNA_Ecto-sp13_S_contig16552.4708.1 vs. uniprot
Match: K0T8C3_THAOC (Polysacc_synt_C domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T8C3_THAOC) HSP 1 Score: 74.3 bits (181), Expect = 1.740e-12 Identity = 46/164 (28.05%), Postives = 83/164 (50.61%), Query Frame = 1
Query: 4 VMLRVFFFFATFGEALSQTAQAFIPGQLA------RERSIESAKKTARAAAAAVLILGVGVGSLNACVAGLVPLHLPHLFTNSLEVAAGMRSLTPLLSWSLLTHACVMGLEGILLARRRLGFLAGCYAVNTVVLVSFMQWVRTWPATRGLHGAWMGLLLLQIIR 477
+++R+FFFFAT G+AL+Q +Q F+PG L E + + + AR + ++ G +N + L+ + +FT+ + M ++P + +L H M LEG ++A +L G Y + VL++ +++ A + G W LLL Q++R
Sbjct: 448 ILMRIFFFFATVGDALNQASQTFLPGLLVIKDRGVTETHVTAVENPARTLLKRLTVISCLSGLVNCILGRLIARYAGGIFTSDANLIRLMAHISPFMGLALSLHPLTMALEGSIIAANDAMYLVGTYGLTLAVLLAQLKF-----ACKDFLGVWHTLLLFQMLR 606
BLAST of mRNA_Ecto-sp13_S_contig16552.4708.1 vs. uniprot
Match: A0A7S2NV18_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NV18_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 3.150e-11 Identity = 56/177 (31.64%), Postives = 88/177 (49.72%), Query Frame = 1
Query: 4 VMLRVFFFFATFGEALSQTAQAFIPGQLARER-------------------SIESAKKTARAAAAAVLILGVGVGSLNACVAGLVPLHLPHLFTNSLEVAAGMRSLTPLLSWSLLTHACVMGLEGILLARRRLGFLAGCYAVNTVVLVSFMQWVRTWPATRGLHGAWMGLLLLQIIR 477
VMLR+FFFFATFG++LSQ AQ+FIP R S E+ + +++ GV + +N+ A + + HLFT L + + M +++ + SL+ H +M EG ++A+R +L G YAV ++++ + RT T G W L L Q+IR
Sbjct: 199 VMLRLFFFFATFGDSLSQAAQSFIPSIAYRNENYTGDDXXXXXXVVDDGSGSTETMHLIRKLMKRFMVMAGV-IAVINSQFAAYLLKNQGHLFTRELGITSIMSNMSGWMRASLIVHPFIMLCEGSIIAKRDFKYLVGTYAVTMGIMLTQL---RTCCMT--FAGVWKALYLFQLIR 369
BLAST of mRNA_Ecto-sp13_S_contig16552.4708.1 vs. uniprot
Match: A0A7S1GI19_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GI19_CYCTE) HSP 1 Score: 67.0 bits (162), Expect = 2.490e-10 Identity = 53/188 (28.19%), Postives = 79/188 (42.02%), Query Frame = 1
Query: 4 VMLRVFFFFATFGEALSQTAQAFIPGQLARERSIES----------------------------AKKTARAAAAAVLILGVGVGSLNACVAGLVPLHLPHLFTNSLEVAAGMRSLTPLLSWSLLTHACVMGLEGILLARRRLGFLAGCYAVNTVVLVSFMQWVRTWPATRGLHGAWMGLLLLQIIRRV 483
+M+R+F FFATFG++LSQ +Q F+P L + ++ S + T R A IL VG L+ + V FT + A M+ + +S SL + +M EG ++A R LGFL G YA+ +L + W T G W + Q +R V
Sbjct: 41 IMMRIFTFFATFGDSLSQASQTFLPRVLVKNKTNNSDVXXXXXXXXXXXXXXXXXXXXXTNGGLIQLTKRLA-----ILSAAVGLLDWSASNFVVHRFGTYFTEEASILALMKQHSFFMSLSLFVYPFIMLFEGAIIATRDLGFLVGTYALTMGILFG-----QLWFGTNSFGGVWRAIFCFQALRTV 218 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16552.4708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16552.4708.1 >prot_Ecto-sp13_S_contig16552.4708.1 ID=prot_Ecto-sp13_S_contig16552.4708.1|Name=mRNA_Ecto-sp13_S_contig16552.4708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp MLRVFFFFATFGEALSQTAQAFIPGQLARERSIESAKKTARAAAAAVLILback to top mRNA from alignment at Ecto-sp13_S_contig16552:232..1689+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16552.4708.1 ID=mRNA_Ecto-sp13_S_contig16552.4708.1|Name=mRNA_Ecto-sp13_S_contig16552.4708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1458bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16552:232..1689+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16552:232..1689+ >mRNA_Ecto-sp13_S_contig16552.4708.1 ID=mRNA_Ecto-sp13_S_contig16552.4708.1|Name=mRNA_Ecto-sp13_S_contig16552.4708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16552:232..1689+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |