mRNA_Ecto-sp13_S_contig16544.4705.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16544.4705.1
Unique NamemRNA_Ecto-sp13_S_contig16544.4705.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16544.4705.1 vs. uniprot
Match: D8LFH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH5_ECTSI)

HSP 1 Score: 374 bits (961), Expect = 9.070e-127
Identity = 209/253 (82.61%), Postives = 220/253 (86.96%), Query Frame = 1 
Query:    1 KGDPITLRGEHPISSITASDTAAGTTKSKLPRNAMLLNSRGSSSS--QGEKKGDLRRRGRVRQEGEPVEENQDDIFARYPETSDKKAWVLAIPLEDGVVREVAEELGALNAARSKEQQYAGDIITHFAVLLQVGHGRCLMLERRGEGGVTASDVHPSEVKHRAVRSEARVVSSLEEIASGFFRRESGRQFDLATNNCRNFAHNFYREFCEGTPFSGAGXXXXXXXXGH--QSKSDDVESFCRWVEQMDRKDGL 747
            +GDP  LRG+HP+SSITA  TAAGT K KL RNAMLLNS        QGEK+ DLRR+GRVRQ GE  EE Q D+ ARYP+TS+KKAWVLAIPLEDGVVREVAEELGALNAARSKEQQYAG+I THFAVLLQVG GRCL+LERRGEGGVTASDV PSEVKHRAVRSEARV SSLEEIASGFFRRESGRQFDLATNNCRNFAHNFYREFCE TPFSGA XXXXXXXX    Q+KSD VESFCRWVEQMDRKDGL
Sbjct:   37 RGDPAALRGKHPVSSITAFGTAAGTKKQKLSRNAMLLNSSXXXXXXXQGEKESDLRRQGRVRQRGERAEEQQYDVLARYPDTSEKKAWVLAIPLEDGVVREVAEELGALNAARSKEQQYAGEIRTHFAVLLQVGDGRCLLLERRGEGGVTASDVRPSEVKHRAVRSEARVASSLEEIASGFFRRESGRQFDLATNNCRNFAHNFYREFCEDTPFSGAXXXXXXXXXXXXXQNKSD-VESFCRWVEQMDRKDGL 288
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BLAST of mRNA_Ecto-sp13_S_contig16544.4705.1 vs. uniprot
Match: D8LFI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI1_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 3.470e-91
Identity = 155/179 (86.59%), Postives = 163/179 (91.06%), Query Frame = 1 
Query:  217 IFARYPETSDKKAWVLAIPLEDGVVREVAEELGALNAARSKEQQYAGDIITHFAVLLQVGHGRCLMLERRGEGGVTASDVHPSEVKHRAVRSEARVVSSLEEIASGFFRRESGRQFDLATNNCRNFAHNFYREFCEGTPFSGAGXXXXXXXXGH--QSKSDDVESFCRWVEQMDRKDGL 747
            I   +P + ++KAWVLAIPLEDGVVREVAEELGALNAARSKEQQYAG+I THFAVLLQVG GRCL+LERRGEGGVTASDV PSEVKHRAVRSEARV SSLEEIASGFFRRESGRQFDLATNNCRNFAHNFYREFCE TPFSGA XXXXXXXX    Q+KS+ VESFCRWVEQMDRKDGL
Sbjct:   28 IKVHHP-SRNRKAWVLAIPLEDGVVREVAEELGALNAARSKEQQYAGEIRTHFAVLLQVGDGRCLLLERRGEGGVTASDVRPSEVKHRAVRSEARVASSLEEIASGFFRRESGRQFDLATNNCRNFAHNFYREFCEDTPFSGAXXXXXXXXXXXXXQNKSN-VESFCRWVEQMDRKDGL 204
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BLAST of mRNA_Ecto-sp13_S_contig16544.4705.1 vs. uniprot
Match: A0A6H5KCS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCS0_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.780e-44
Identity = 84/111 (75.68%), Postives = 97/111 (87.39%), Query Frame = 1 
Query:    1 KGDPITLRGEHPISSITASDTAAGTTKSKLPRNAMLLNSRGSSSSQGEKKGDLRRRGRVRQEGEPVEENQDDIFARYPETSDKKAWVLAIPLEDGVVREVAEELGALNAAR 333
            +GDP TLRG+HPI+SITA  TAAG TKSKLPRNAMLLNS  SSSSQG+++  LRR+GRVRQEGE  ++ QD +FAR+P+TSDKKAWVL IPLE GVV+EVAEELGALNAAR
Sbjct:   37 RGDPTTLRGKHPINSITAFGTAAGATKSKLPRNAMLLNSSSSSSSQGKRESALRRQGRVRQEGERADQQQDHVFARFPDTSDKKAWVLVIPLEAGVVKEVAEELGALNAAR 147
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BLAST of mRNA_Ecto-sp13_S_contig16544.4705.1 vs. uniprot
Match: A0A6H5K091_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K091_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.510e-18
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:  334 SKEQQYAGDIITHFAVLLQVGHGRCLMLERRGEGGVTASDVHPSEVK 474
            SKEQQYAG+I THFAVLLQVG GRCL+LERRGEGGVTASDVHPS+VK
Sbjct:   19 SKEQQYAGEISTHFAVLLQVGDGRCLILERRGEGGVTASDVHPSQVK 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16544.4705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LFH5_ECTSI9.070e-12782.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFI1_ECTSI3.470e-9186.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCS0_9PHAE1.780e-4475.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K091_9PHAE1.510e-1889.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16544contigEcto-sp13_S_contig16544:164..1484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1097
Hectar predicted targeting categoryother localisation
Exons2
Cds size648
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.232695-UTR-Ecto-sp13_S_contig16544:163..2651681462869.232695-UTR-Ecto-sp13_S_contig16544:163..265Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16544 164..265 +
1681462869.2691264-UTR-Ecto-sp13_S_contig16544:1137..14841681462869.2691264-UTR-Ecto-sp13_S_contig16544:1137..1484Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16544 1138..1484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.2432454-CDS-Ecto-sp13_S_contig16544:265..4941681462869.2432454-CDS-Ecto-sp13_S_contig16544:265..494Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16544 266..494 +
1681462869.2543492-CDS-Ecto-sp13_S_contig16544:718..11371681462869.2543492-CDS-Ecto-sp13_S_contig16544:718..1137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16544 719..1137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16544.4705.1prot_Ecto-sp13_S_contig16544.4705.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16544 266..1137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16544.4705.1

>prot_Ecto-sp13_S_contig16544.4705.1 ID=prot_Ecto-sp13_S_contig16544.4705.1|Name=mRNA_Ecto-sp13_S_contig16544.4705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp
MLLNSRGSSSSQGEKKGDLRRRGRVRQEGEPVEENQDDIFARYPETSDKK
AWVLAIPLEDGVVREVAEELGALNAARSKEQQYAGDIITHFAVLLQVGHG
RCLMLERRGEGGVTASDVHPSEVKHRAVRSEARVVSSLEEIASGFFRRES
GRQFDLATNNCRNFAHNFYREFCEGTPFSGAGGGGGGGGDGHQSKSDDVE
SFCRWVEQMDRKDGL*
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mRNA from alignment at Ecto-sp13_S_contig16544:164..1484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16544.4705.1 ID=mRNA_Ecto-sp13_S_contig16544.4705.1|Name=mRNA_Ecto-sp13_S_contig16544.4705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16544:164..1484+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGCGATCCAATCACCCTCCGAGGAGAGCACCCCATCAGCAGCATCAC
CGCCTCTGACACAGCAGCAGGCACAACAAAAAGCAAGCTCCCCCGAAATG
CGATGCTTCTAAACAGCAGAGGCAGCAGCAGCAGCCAAGGAGAGAAGAAG
GGCGATTTACGACGGCGAGGTCGAGTCAGACAAGAAGGAGAACCGGTTGA
AGAAAACCAGGACGATATATTTGCCCGTTACCCAGAAACCAGCGATAAGA
AAGCGTGGGTGCTCGCAATACCGCTGGAAGATGGAGTTGTCAGGGAGGTC
GCGGAAGAGCTCGGCGCGCTCAACGCAGCACGTGAGAGCTGTCTCAATCA
ACATCTTTGTTGCAGCAGTTGTTGCCGCGCGGAATCAAAACCAGAAATGC
AAGTACTGCTCGTTAACCCCCTCGCGATACGCTTCGGCGTTTGGAGACGG
GGGCATGTTTTGAGTCCGTTGACCTCCCGCAGTCTCAACACACCGCCCTT
TTTAATCGACGCAACAATCGCCGCCGTGTCTGCTTTTTCCTGGCCCGTTT
CACAGGCTCGAAAGAGCAGCAGTACGCCGGCGATATCATCACCCACTTTG
CAGTTCTCCTGCAGGTGGGACATGGCCGCTGCTTGATGCTCGAGCGCCGG
GGGGAGGGCGGCGTGACCGCTTCCGATGTCCACCCCTCCGAGGTAAAGCA
CAGGGCGGTGCGCAGCGAGGCGAGAGTGGTGTCCTCTCTGGAAGAGATCG
CTTCGGGTTTCTTTCGAAGGGAGAGCGGGCGGCAGTTCGACCTCGCCACC
AACAACTGCCGGAACTTCGCGCACAACTTCTACCGCGAGTTTTGTGAGGG
CACGCCGTTCTCTGGTGCAGGTGGCGGCGGCGGCGGCGGCGGTGATGGTC
ACCAGAGTAAAAGCGACGACGTTGAGAGCTTCTGCCGCTGGGTAGAACAG
ATGGACCGCAAGGATGGTTTGTGACCCCCCCCATGTGCATCGAAGTGTTT
CTTGTAAATATTATGGTGAACCAGGCACATTAGGGCCGTGGATCTCGAAC
GGGAGCGGAGAATACTTTTCAAACGCCCTTGCAAACAGCTCTGCTGATGT
ACCCGTTCGCTCTTTTGACTTGAATTTAGGCTAGTGTGATTTTATGCTGA
TTTCAAGCAGGACTTGTGGAGGTAGACTGCATGATATGCATGTTTGGAAC
AGCCTCTACTACCGCCCTATGCGAGAATCAACGATTTCTGGTTTTCCTGA
TGCCTTCCGACTGATCTTTTGTGTCTCGTATGCAGTTTCTGGTGCTTCTG
CGGTTAATTTCAAAACCAGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16544:164..1484+

>mRNA_Ecto-sp13_S_contig16544.4705.1 ID=mRNA_Ecto-sp13_S_contig16544.4705.1|Name=mRNA_Ecto-sp13_S_contig16544.4705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16544:164..1484+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTCTAAACAGCAGAGGCAGCAGCAGCAGCCAAGGAGAGAAGAAGGG
CGATTTACGACGGCGAGGTCGAGTCAGACAAGAAGGAGAACCGGTTGAAG
AAAACCAGGACGATATATTTGCCCGTTACCCAGAAACCAGCGATAAGAAA
GCGTGGGTGCTCGCAATACCGCTGGAAGATGGAGTTGTCAGGGAGGTCGC
GGAAGAGCTCGGCGCGCTCAACGCAGCACGCTCGAAAGAGCAGCAGTACG
CCGGCGATATCATCACCCACTTTGCAGTTCTCCTGCAGGTGGGACATGGC
CGCTGCTTGATGCTCGAGCGCCGGGGGGAGGGCGGCGTGACCGCTTCCGA
TGTCCACCCCTCCGAGGTAAAGCACAGGGCGGTGCGCAGCGAGGCGAGAG
TGGTGTCCTCTCTGGAAGAGATCGCTTCGGGTTTCTTTCGAAGGGAGAGC
GGGCGGCAGTTCGACCTCGCCACCAACAACTGCCGGAACTTCGCGCACAA
CTTCTACCGCGAGTTTTGTGAGGGCACGCCGTTCTCTGGTGCAGGTGGCG
GCGGCGGCGGCGGCGGTGATGGTCACCAGAGTAAAAGCGACGACGTTGAG
AGCTTCTGCCGCTGGGTAGAACAGATGGACCGCAAGGATGGTTTGTGA
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