mRNA_Ecto-sp13_S_contig16537.4704.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16537.4704.1
Unique NamemRNA_Ecto-sp13_S_contig16537.4704.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16537.4704.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 7.210e-46
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 1 
Query:    1 GGDDAATGEVSMPMGEWFVNGNIFMKSGVYLNARFSIDDSPYTTNIILEDGAAGKTDTAAIILMDGISDARLSEVWIYGNYDSETSN 261
            GGDDAATGEVSMPMGEWFV+GNIFMKSGVYL+A FSIDDSPYTT+IILEDGAAGKTDTAAII+MDGISDARLSEVWIYG+YDSETSN
Sbjct:  856 GGDDAATGEVSMPMGEWFVDGNIFMKSGVYLDASFSIDDSPYTTDIILEDGAAGKTDTAAIIVMDGISDARLSEVWIYGHYDSETSN 942
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BLAST of mRNA_Ecto-sp13_S_contig16537.4704.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.000e-41
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:    1 GGDDAATGEVSMPMGEWFVNGNIFMKSGVYLNARFSIDDSPYTTNIILEDGAAGKTDTAAIILMDGISDARLSEVWIYGNYDSETSN 261
            GGDDAATGEVSMPMGEWFV+GNIFMKSGV+L+A FSIDDSPYTT+IILEDGAAGKTDTAA+I+MD IS+ARLS  WI GNYDSETSN
Sbjct:  671 GGDDAATGEVSMPMGEWFVDGNIFMKSGVHLHAWFSIDDSPYTTDIILEDGAAGKTDTAAMIVMDNISNARLSNTWIIGNYDSETSN 757
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BLAST of mRNA_Ecto-sp13_S_contig16537.4704.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 9.840e-29
Identity = 56/87 (64.37%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 GGDDAATGEVSMPMGEWFVNGNIFMKSGVYLNARFSIDDSPYTTNIILEDGAAGKTDTAAIILMDGISDARLSEVWIYGNYDSETSN 261
            GGDDAATG V +P G W+V+GNIFMKSGV+L+  FS +DSPY T IILE+GAAGKTD  A+++MDGIS+A    +WI G+YD +TSN
Sbjct:  867 GGDDAATGTVVLPQGSWYVDGNIFMKSGVFLDGSFS-EDSPYFTGIILEEGAAGKTDIDAMVVMDGISNAMTDNIWIRGHYDPDTSN 952
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BLAST of mRNA_Ecto-sp13_S_contig16537.4704.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.420e-26
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    1 GGDDAATGEVSMPMGEWFVNGNIFMKSGVYLNARFSIDDSPYTTNIILEDGAAGKTDTAAIILMDGISDARLSEVWIYGNYDSETSN 261
            G DD+ATG V +  GE+ V+GNIFMKSGV+L  R+  DDSPY  +I LE+GA G TD  A+I+MDGISDAR+ ++WI+G YD +TSN
Sbjct:  703 GMDDSATGTVVLAFGEYHVDGNIFMKSGVFLKGRYRFDDSPYNIDIFLEEGAPGNTDVDAMIVMDGISDARIGDLWIHGLYDPDTSN 789
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BLAST of mRNA_Ecto-sp13_S_contig16537.4704.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.180e-22
Identity = 49/83 (59.04%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    7 DDAATGEVSMPMGEWFVNGNIFMKSGVYLNARFSIDDSPYTTNIILEDGAAGKTDTAAIILMDGISDARLSEVWIYGNYDSET 255
            DD ATG V +  G ++VNGNIFM+SGV L   F  DD P+TT+I+LE+GA G TD  AI++MDGI DA + +VWI GNYD ET
Sbjct:  877 DDTATGTVDLSWGAYYVNGNIFMQSGVLLLGSFG-DDDPHTTDIVLEEGAEGNTDIDAIVVMDGIRDAWIEKVWIQGNYDPET 958
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16537.4704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FTH1_ECTSI7.210e-4693.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KH45_9PHAE2.000e-4186.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL74_9PHAE9.840e-2964.37F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
D7FZZ4_ECTSI1.420e-2659.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFA6_9PHAE1.180e-2259.04F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16537contigEcto-sp13_S_contig16537:1156..2292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size262
Hectar predicted targeting categoryother localisation
Exons4
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.1691658-CDS-Ecto-sp13_S_contig16537:1156..12041681462869.1691658-CDS-Ecto-sp13_S_contig16537:1156..1204Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16537 1157..1204 -
1681462869.1781492-CDS-Ecto-sp13_S_contig16537:1502..16141681462869.1781492-CDS-Ecto-sp13_S_contig16537:1502..1614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16537 1503..1614 -
1681462869.186485-CDS-Ecto-sp13_S_contig16537:1919..19931681462869.186485-CDS-Ecto-sp13_S_contig16537:1919..1993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16537 1920..1993 -
1681462869.194883-CDS-Ecto-sp13_S_contig16537:2265..22921681462869.194883-CDS-Ecto-sp13_S_contig16537:2265..2292Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16537 2266..2292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16537.4704.1prot_Ecto-sp13_S_contig16537.4704.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16537 1157..2292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16537.4704.1

>prot_Ecto-sp13_S_contig16537.4704.1 ID=prot_Ecto-sp13_S_contig16537.4704.1|Name=mRNA_Ecto-sp13_S_contig16537.4704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
GGDDAATGEVSMPMGEWFVNGNIFMKSGVYLNARFSIDDSPYTTNIILED
GAAGKTDTAAIILMDGISDARLSEVWIYGNYDSETSN
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mRNA from alignment at Ecto-sp13_S_contig16537:1156..2292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16537.4704.1 ID=mRNA_Ecto-sp13_S_contig16537.4704.1|Name=mRNA_Ecto-sp13_S_contig16537.4704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1137bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16537:1156..2292- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGTGATGACGCTGCCACGGGCGAGGTAAGCCCGTTTTGTGCTCTGTG
CTGTGTTGCGTCTGGCGCCGTCTCGATAGCATATTTCTCATGGAAAACAT
CGCGGTTAAGCAGAAAGGGGTTGTTGCCCGAATATCTTTGGCTCCTCTGT
TACTCGAACCTATCCCCCAATGCACCAGACTGATGTTTGCAGCAGATGAT
ACCGTTGTGGTCGTATATCCTACAACATGACGGTCTGTGCCATTCTTCTC
CGCTCGTTTTCCTCCCTGCAATTGCTTTCGTTGCCCGCGAACGTATCAGG
TGAGCATGCCCATGGGCGAGTGGTTCGTGAACGGCAATATCTTCATGAAG
TCGGGAGTCTACCTCAACGCCAGGTACGGCGAAGCTTGAGATAACAGCTC
GGATTCGGCTTTTCGGGATGCGGACGCGATGTGCCGTGTGTGTCCACGCT
TCGGAAATTACGATGTGCACTCCCCACCGACCCGAACTCTTCGCTTGCGA
GGTACATGTAGTAAGGGAAACTCATGGAGAAGACGTTACCATGTATGCAT
GTGTCCATTGGAGTGCCCGAGAACCGGAGACCACCCAGAAGCCATTCGAG
TGACGTTCTCAAGCAGCCTTCACGCCGGCCGCTACCGTTTCCAATGTGCC
CTCTTGCCCTGCCGTGCTTTTTTCCCAGGTTTTCCATTGACGACTCCCCG
TACACGACCAACATCATCCTTGAAGACGGGGCGGCGGGAAAGACGGACAC
CGCTGCCATTATCCTCATGGACGGCATATCCGACGCACGGGTACGTGAAT
GATAAGCTCAACCGAACCAACCAATCCACCTTTCCATTCCTCGCAAACGT
ATATCTGATCGTTCTTTTCCATGCTTGATAGATGATGACAGGGGCGTAAG
TGCGGGAGTGTTTTGTCAAGGTCTGTTGCCTGCCGAATCTGTTCCAACTC
TTGGCATCACCACCAACCAACCGATACCGCTCAAGACGTCTACAATCCAA
GGTGAACGTGGTTTCTGTTTGATCGGTACTTGATGGCAGAATAACACTAA
CGTGCTAGCGTTTTCCTTTTTACGCTCGCGTGGGACAGCTTTCAGAGGTG
TGGATCTACGGCAACTACGACAGCGAGACGAGCAACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16537:1156..2292-

>mRNA_Ecto-sp13_S_contig16537.4704.1 ID=mRNA_Ecto-sp13_S_contig16537.4704.1|Name=mRNA_Ecto-sp13_S_contig16537.4704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16537:1156..2292- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGTGATGACGCTGCCACGGGCGAGGTGAGCATGCCCATGGGCGAGTG
GTTCGTGAACGGCAATATCTTCATGAAGTCGGGAGTCTACCTCAACGCCA
GGTTTTCCATTGACGACTCCCCGTACACGACCAACATCATCCTTGAAGAC
GGGGCGGCGGGAAAGACGGACACCGCTGCCATTATCCTCATGGACGGCAT
ATCCGACGCACGGCTTTCAGAGGTGTGGATCTACGGCAACTACGACAGCG
AGACGAGCAAC
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