mRNA_Ecto-sp13_S_contig16533.4703.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16533.4703.1
Unique NamemRNA_Ecto-sp13_S_contig16533.4703.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16533.4703.1 vs. uniprot
Match: A0A6H5JJ39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ39_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 6.140e-77
Identity = 119/143 (83.22%), Postives = 126/143 (88.11%), Query Frame = 1 
Query:    1 MNFDQSYGSLDNLVTCPSEEPDPGYLANAIGIAITAAFVVPELACRKELVRSPNIRWCSLFSLNEFMPAIFLLGLALATWQKCYAVPIGILLDCAVLVNMVIGALLQLYSRWKLAKETATSVPKVVEASKKVSNFDIHRWRRA 429
            MNFDQS+GSLDNLVTCPSEEPDP YLANA G AITAAF VPELACRKELVRSP IRWCSLFSLNEFMPAIF LGL LATWQKC+A P+GILL+CAVL NMV+GALLQLY+RWKL KET+TSVPKVVEASKKV     H  RRA
Sbjct:   82 MNFDQSHGSLDNLVTCPSEEPDPNYLANANGTAITAAFAVPELACRKELVRSPTIRWCSLFSLNEFMPAIFRLGLVLATWQKCHAAPVGILLNCAVLTNMVVGALLQLYTRWKLIKETSTSVPKVVEASKKVGQG--HGRRRA 222
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BLAST of mRNA_Ecto-sp13_S_contig16533.4703.1 vs. uniprot
Match: D8LHA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA5_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 4.640e-63
Identity = 110/146 (75.34%), Postives = 123/146 (84.25%), Query Frame = 1 
Query:    1 MNFDQSYGSLDN-LVTCPSEEPDPGYLANAIGIAITAAFVVPELACRKELVRSPNIRWCSLFSLNEFMPAIFLLGLALATWQKCYAVPIGILLDCAVLVNMVIGALLQLYSRWKLAKETATSVPKVVEASKKVSNFDIHRWRRASV 435
            MNF ++YG LD+ L TCPSEE DPGYLANAIGI ITAAFV+PELACRKELV+SPNIR C  FS+NE MPA+FL GLALAT +KC  V +GILL+C V V+MV GALLQLY+  KL KETATSVP+VVEASK VSNFDI RWRRASV
Sbjct:  116 MNFHENYGPLDDTLGTCPSEERDPGYLANAIGIVITAAFVIPELACRKELVKSPNIR-C--FSVNELMPALFLAGLALATVRKCLVVSLGILLNCWVPVSMVFGALLQLYTCRKLKKETATSVPQVVEASKNVSNFDIDRWRRASV 258
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BLAST of mRNA_Ecto-sp13_S_contig16533.4703.1 vs. uniprot
Match: D8LHA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA7_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 9.360e-16
Identity = 60/152 (39.47%), Postives = 81/152 (53.29%), Query Frame = 1 
Query:    1 MNFDQSYGSLDNLVT--CPSEEPDPGYLANAIGIAITAAFVVPELACRKELVRSPNIRWCSLFSLNEFMPAIFLLGLALATWQKCYAVPIGILLDCAVLVNMVIGALLQLYSRWKLAKETATSVPKVVEASKKV-----SNFDIHRWRRASV 435
            MNF++ YG L N+    CP EE D  YLAN IGIAITAAFVVP  A R + ++SP I     F+ ++ M   FL+GLAL+T   C+    G  +   V+V+ V+ ++   +    L K      P  VE S K      S F++  W  ASV
Sbjct:  284 MNFNEFYG-LRNIWDDGCPGEERDSDYLANGIGIAITAAFVVP--AIRADRMKSPYIS----FTRDDLMAVAFLIGLALSTSPYCHWAISGCFVSFLVVVSAVVASVRHYFKCKHLRKTVKQRPPVTVEVSSKEVKATSSEFNMSEWFHASV 428
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BLAST of mRNA_Ecto-sp13_S_contig16533.4703.1 vs. uniprot
Match: A0A6H5JJB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJB2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 8.460e-12
Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 1 
Query:    1 MNFDQSYGSLDNLVT--CPSEEPDPGYLANAIGIAITAAFVVPELACRKELVRSPNIRWCSLFSLNEFMPAIFLLGLALATWQKCYAVPIGILLDCAVLVNMVIGALLQLYSRWKLAKETATSVPKVVEAS 387
            MNF++ YG L N+    CP  + D  YLAN IGIAITAAFVVP  A R + ++SP I     F+ ++     FLLGLAL+T   C+    G  +   V+V+ V+ ++   +    + K      P +VEAS
Sbjct:  202 MNFNEFYG-LRNIWDDGCPRGKRDSDYLANGIGIAITAAFVVP--AIRADRMKSPYIS----FTRDDLTAVTFLLGLALSTSSYCHWAISGCFVSFLVVVSAVVASVRHYFKCKHMRKTVEQRPPVMVEAS 325
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16533.4703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JJ39_9PHAE6.140e-7783.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHA5_ECTSI4.640e-6375.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHA7_ECTSI9.360e-1639.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJB2_9PHAE8.460e-1238.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16533contigEcto-sp13_S_contig16533:2375..3871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size438
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001170.1
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.1143336-CDS-Ecto-sp13_S_contig16533:2374..24191681462869.1143336-CDS-Ecto-sp13_S_contig16533:2374..2419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16533 2375..2419 -
1681462869.1243205-CDS-Ecto-sp13_S_contig16533:2859..30851681462869.1243205-CDS-Ecto-sp13_S_contig16533:2859..3085Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16533 2860..3085 -
1681462869.132325-CDS-Ecto-sp13_S_contig16533:3704..38711681462869.132325-CDS-Ecto-sp13_S_contig16533:3704..3871Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16533 3705..3871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16533.4703.1prot_Ecto-sp13_S_contig16533.4703.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16533 2375..3871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16533.4703.1

>prot_Ecto-sp13_S_contig16533.4703.1 ID=prot_Ecto-sp13_S_contig16533.4703.1|Name=mRNA_Ecto-sp13_S_contig16533.4703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MNFDQSYGSLDNLVTCPSEEPDPGYLANAIGIAITAAFVVPELACRKELV
RSPNIRWCSLFSLNEFMPAIFLLGLALATWQKCYAVPIGILLDCAVLVNM
VIGALLQLYSRWKLAKETATSVPKVVEASKKVSNFDIHRWRRASV*
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mRNA from alignment at Ecto-sp13_S_contig16533:2375..3871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16533.4703.1 ID=mRNA_Ecto-sp13_S_contig16533.4703.1|Name=mRNA_Ecto-sp13_S_contig16533.4703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1497bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16533:2375..3871- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTTCGACCAGTCCTACGGATCCCTTGACAACTTGGTCACTTGTCC
TAGCGAGGAACCAGACCCAGGCTATCTCGCCAACGCCATCGGCATTGCCA
TCACTGCAGCGTTCGTGGTCCCTGAGCTTGCATGTAGGAAGGAGTTAGTG
AGATCGCCGAATATCAGGTGGGGGCTCTGAACGAACCAATAGTTCGTGCG
TTTTCCTGGGCCAAACCACATTTGGAGAACCCAATCGCGACGCAACTATT
AGGATGCAGGGCTACCTCTCCCTGTGCACATGCCGTCAAATTGCCCGTGG
TGTTTATCACATGTGGTAGTGGAGTATTATTATCTTGTACGCAGGGTGGA
AAACCTACACTCCGCACAAAGGGAATGATCGTTCCACGAAGTATGAAAAG
GATCATGTCAACACAAGGCATTTGTGCTTTTGTATATACGCAATGGTTGT
CTCTGGATATGGTGAGACCAACACCGTCAACTAGTCGCCCGAAAGCTCTT
GTAAGTTGTTTTGCAAGAAAGTACACACAACAATACTTCCCGAACAATCT
CTGGTGAAAAGCACATTCACCCTTCAAGAGGTTCGCAGAAGATCACCATG
GGGCTTCACAATTCTTGGCAACCCCGTCAGCCTTTTGAAGTCCGGTGCGC
TCTATCCTGGCTGTGCACAGTGATCTACCGAACACAGCATGCATGGTCAT
GACCACACATCCTCCTCGACGCGACTCTGGCATCATCTCCATATCTGACA
CGATGAAACGAACGCACAGCTGACTCCCGAACGCAGGTGGTGCTCGTTGT
TCTCTCTGAACGAATTCATGCCGGCGATCTTTCTTTTAGGGCTTGCATTG
GCTACGTGGCAGAAATGCTACGCGGTGCCTATAGGAATCCTGCTTGACTG
CGCGGTGCTTGTGAACATGGTCATCGGCGCTCTACTCCAGTTGTACTCTC
GCTGGAAACTGGCTAAGGAAACTGCGACGAGCGTCCCGAAAGTCGTGGAA
GCTAGTAAAAAAGTGGGTCAGGGCCATGGTGGGCGTCGGGCCTGCGCGTT
TCATTGAGAGATCATTTGATTCGGGATGACCTAAATCCTTGCCGTCGCTT
GTCTTTGCTGATCCCTGTGTCGATGTAGCTAACACACATGATGGTACATG
CTTGAGCGTGATTTTATTTGCAATATAGCGTGATTTTATTTGCATCATAG
CGGACGTGCCGCGTTGGAAGAACATCGCAATACCAAAGCATCTTGCCGAG
ACACATGGTGCCCCTACATGCATGCGATGATCCCTGAGTTTCACTCGGGA
ATACGAGGTGTTATTCATGGCGTTGCGAGGTGATCGCACTCGAAAGTTTC
GAAAGGGGCACCAGTGCCTTCTGCTCGAATTTGAAGGGAATGGTTCTGCT
CTTGGTGGTATCCACACGTATTTCTGGCTCACACGAGCTTCTGTTTTCCC
AGGTCTCGAACTTCGACATTCACAGGTGGCGCCGAGCGAGCGTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16533:2375..3871-

>mRNA_Ecto-sp13_S_contig16533.4703.1 ID=mRNA_Ecto-sp13_S_contig16533.4703.1|Name=mRNA_Ecto-sp13_S_contig16533.4703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16533:2375..3871- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTTCGACCAGTCCTACGGATCCCTTGACAACTTGGTCACTTGTCC
TAGCGAGGAACCAGACCCAGGCTATCTCGCCAACGCCATCGGCATTGCCA
TCACTGCAGCGTTCGTGGTCCCTGAGCTTGCATGTAGGAAGGAGTTAGTG
AGATCGCCGAATATCAGGTGGTGCTCGTTGTTCTCTCTGAACGAATTCAT
GCCGGCGATCTTTCTTTTAGGGCTTGCATTGGCTACGTGGCAGAAATGCT
ACGCGGTGCCTATAGGAATCCTGCTTGACTGCGCGGTGCTTGTGAACATG
GTCATCGGCGCTCTACTCCAGTTGTACTCTCGCTGGAAACTGGCTAAGGA
AACTGCGACGAGCGTCCCGAAAGTCGTGGAAGCTAGTAAAAAAGTCTCGA
ACTTCGACATTCACAGGTGGCGCCGAGCGAGCGTTTAG
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