prot_Ecto-sp13_S_contig16531.4701.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16531.4701.1
Unique Nameprot_Ecto-sp13_S_contig16531.4701.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length311
Homology
BLAST of mRNA_Ecto-sp13_S_contig16531.4701.1 vs. uniprot
Match: D7G0P2_ECTSI (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P2_ECTSI)

HSP 1 Score: 491 bits (1263), Expect = 3.060e-170
Identity = 287/310 (92.58%), Postives = 291/310 (93.87%), Query Frame = 0
Query:    1 QDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQISFPRQDLDTIVSILAGALTLPGGSXXXXXXXXXXXXXXXXXXXXXXXAGVSAAFARDFNAVTRQTLGGAKNGVTSANXXXXXXXXXSGAQRCASSALPDLKELAASGRSVGWFLRLASTAVGLLRDDEMGVTRRALARAGEMLAPDSHALALRSLSVTQALVLVAMVRLERRGRKKDGCSFEAVFREYGSYLREFRTCHLRFSRAMIFKAFSQLVEQGALRSAEPGTGGGREAHPVLHCRFRSHFDIEQVERALEKNVIAAPTNVARWCKRWQRQ 310
            QDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQI FPRQ LDTIVSILAGALTLPGG+ XXXXXXXXXXXXXXX        GVSAAFARDFNAVTRQTLGGAKNGVTS  XXXXXXXXX   QR ASSALPDLK+LAASGRSVGW LRLASTAVGLLRDDE GVTRRALARAGEMLAPDSH+LALRSLSVTQALVLVAMVRLERRGRKKDGCSFEAVFREYGSYLREFRTCHLRFSRA+IFKAFSQLVEQGALRSAEPGTGGGREAHPVLHCRFRSHFDIEQVERALEKNVIAAPTNVARWCKRWQRQ
Sbjct:  206 QDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIGFPRQALDTIVSILAGALTLPGGNDXXXXXXXXXXXXXXX--------GVSAAFARDFNAVTRQTLGGAKNGVTSXXXXXXXXXXXXXXQRSASSALPDLKDLAASGRSVGWLLRLASTAVGLLRDDEKGVTRRALARAGEMLAPDSHSLALRSLSVTQALVLVAMVRLERRGRKKDGCSFEAVFREYGSYLREFRTCHLRFSRAVIFKAFSQLVEQGALRSAEPGTGGGREAHPVLHCRFRSHFDIEQVERALEKNVIAAPTNVARWCKRWQRQ 507          
BLAST of mRNA_Ecto-sp13_S_contig16531.4701.1 vs. uniprot
Match: A0A6H5JJU9_9PHAE (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU9_9PHAE)

HSP 1 Score: 471 bits (1213), Expect = 4.610e-162
Identity = 288/311 (92.60%), Postives = 289/311 (92.93%), Query Frame = 0
Query:    1 QDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQISFPRQDLDTIVSILAGALTLPGGSXXXXXXXXXXXXXXXXXXXXXXXAGVSAAFARDFNAVTRQTLGGAKNGVTSANXXXXXXXXXSG-AQRCASSALPDLKELAASGRSVGWFLRLASTAVGLLRDDEMGVTRRALARAGEMLAPDSHALALRSLSVTQALVLVAMVRLERRGRKKDGCSFEAVFREYGSYLREFRTCHLRFSRAMIFKAFSQLVEQGALRSAEPGTGGGREAHPVLHCRFRSHFDIEQVERALEKNVIAAPTNVARWCKRWQRQ 310
            QDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQI FP QDLDTIVSILAGALTLPGGS XXXXXXXXXXXXXXXXXXXXXX       AR+FNAVTRQTLGGAKNG     XXXXXXXXX   AQR ASSALPDLKELAASGRSVGWFLRLASTAVGLLRDDE GVTRRALARAGEMLAPDSHALALRSLSVTQALVLVAMVRLERRGRKKDGCSFE VFREYGSYLREFRTCHLRFSRAMIFKAFSQLVEQGALRSAEPGTGGGREAHPVLHCRFRSHFDIEQVERALEKNVI APTNVARWCKRWQRQ
Sbjct:  244 QDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIGFPGQDLDTIVSILAGALTLPGGSNXXXXXXXXXXXXXXXXXXXXXXX------AREFNAVTRQTLGGAKNGXXXXXXXXXXXXXXXXXAQRSASSALPDLKELAASGRSVGWFLRLASTAVGLLRDDEKGVTRRALARAGEMLAPDSHALALRSLSVTQALVLVAMVRLERRGRKKDGCSFETVFREYGSYLREFRTCHLRFSRAMIFKAFSQLVEQGALRSAEPGTGGGREAHPVLHCRFRSHFDIEQVERALEKNVINAPTNVARWCKRWQRQ 548          
BLAST of mRNA_Ecto-sp13_S_contig16531.4701.1 vs. uniprot
Match: A0A6H5K6K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K5_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 8.580e-25
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0
Query:  256 RSAEPGTGGGREAHPVLHCRFRSHFDIEQVERALEKNVIAAPTNVARWCKRWQRQ 310
            +S E   GGGREAHPVLHCRFRSHFDI QVERALEKNVIAAPTNVARWCKRWQRQ
Sbjct:  138 QSLETLNGGGREAHPVLHCRFRSHFDIGQVERALEKNVIAAPTNVARWCKRWQRQ 192          
BLAST of mRNA_Ecto-sp13_S_contig16531.4701.1 vs. uniprot
Match: A0A835Z3B3_9STRA (Origin recognition complex subunit 4 C-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3B3_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 8.850e-11
Identity = 48/142 (33.80%), Postives = 70/142 (49.30%), Query Frame = 0
Query:  166 VTRRALARAGEMLAPDSHALALRSLSVTQALVLVAMVRLERRGRKKDGCSFEAVFREYGSYLREFRTCHLRFSRAMIFKAFSQLVEQGALRSAEPGTGGGREAHPVLHCRFRSHFDIEQVERALEKNVIAAPTNVARWCKRW 307
            +T  A+  A  MLAPD    A++SL   Q LVLVAM+R+ERR  +K   +F  V+ EY S          R++R  I  AF+QL++ G +     G GGG      L        D + +  AL+   +  P  + +WC +W
Sbjct:  344 LTAAAVRAAAHMLAPDHELEAVQSLPQLQLLVLVAMLRMERR--RKRAYTFAGVYAEYESLGARQGLGAARYTRDTIAHAFAQLLQAGLITPVRSGGGGGGAP---LQAIVSLAVDPDALSEALKDGTVECPMAIVQWCTQW 480          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16531.4701.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0P2_ECTSI3.060e-17092.58Origin recognition complex subunit 4 n=1 Tax=Ectoc... [more]
A0A6H5JJU9_9PHAE4.610e-16292.60Origin recognition complex subunit 4 n=1 Tax=Ectoc... [more]
A0A6H5K6K5_9PHAE8.580e-2589.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z3B3_9STRA8.850e-1133.80Origin recognition complex subunit 4 C-terminus-do... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032705Origin recognition complex subunit 4, C-terminalPFAMPF14629ORC4_Ccoord: 135..266
e-value: 1.4E-8
score: 34.4
IPR016527Origin recognition complex subunit 4PANTHERPTHR12087ORIGIN RECOGNITION COMPLEX SUBUNIT 4coord: 1..307
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 185..202
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..184
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 203..310

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16531contigEcto-sp13_S_contig16531:449..2976 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16531.4701.1mRNA_Ecto-sp13_S_contig16531.4701.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16531 449..2976 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16531.4701.1 ID=prot_Ecto-sp13_S_contig16531.4701.1|Name=mRNA_Ecto-sp13_S_contig16531.4701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
QDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQISFPRQDLDTIVSILA
GALTLPGGSDDDDDDDDDDDDDEEGSESPPPPAGVSAAFARDFNAVTRQT
LGGAKNGVTSANNNSGGGGGGSGAQRCASSALPDLKELAASGRSVGWFLR
LASTAVGLLRDDEMGVTRRALARAGEMLAPDSHALALRSLSVTQALVLVA
MVRLERRGRKKDGCSFEAVFREYGSYLREFRTCHLRFSRAMIFKAFSQLV
EQGALRSAEPGTGGGREAHPVLHCRFRSHFDIEQVERALEKNVIAAPTNV
ARWCKRWQRQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032705ORC4_C
IPR016527ORC4