mRNA_Ecto-sp13_S_contig10028.47.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10028.47.1
Unique NamemRNA_Ecto-sp13_S_contig10028.47.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10028.47.1 vs. uniprot
Match: D8LSY3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY3_ECTSI)

HSP 1 Score: 508 bits (1307), Expect = 2.880e-179
Identity = 298/325 (91.69%), Postives = 302/325 (92.92%), Query Frame = 1 
Query:    1 MTPKNLPLFAPTRRLSSCLVALLTYGVAQAGEGALDQRPKQ-IHPSYLNSYLQQQQLPQQQRQQHADQLQLTPAVSTTAKLLGRITGGANXXXXXXXXXXXXXXXXXXXXXXXAAPDAIEVSGADLAESTNGRSSQRQHLDGVYVREWDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPAWKAKEESRSSAGANRYGGSSDNGLASAETQKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY 972
            MTPKN PLFAPTRRLSSCLVALLTYGVAQAGEGALDQRP+Q IHPSYL    QQQ          A+QLQLTPAVSTTAKLL RITGGAN  XXXXXXXXXXXXXXXXXXXXXAAPDAIEVSGAD AESTNGRSSQ+QHLDGVYVR WDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPAWKAKEESR+SAGANRYGGSS NGLASAE QKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY
Sbjct:    1 MTPKNSPLFAPTRRLSSCLVALLTYGVAQAGEGALDQRPQQQIHPSYLQ---QQQLXXXXXXXXXAEQLQLTPAVSTTAKLLDRITGGANSHXXXXXXXXXXXXXXXXXXXXXAAPDAIEVSGADFAESTNGRSSQQQHLDGVYVRGWDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPAWKAKEESRASAGANRYGGSSGNGLASAEAQKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY 322
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BLAST of mRNA_Ecto-sp13_S_contig10028.47.1 vs. uniprot
Match: A0A6H5L781_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L781_9PHAE)

HSP 1 Score: 492 bits (1266), Expect = 1.690e-166
Identity = 291/324 (89.81%), Postives = 294/324 (90.74%), Query Frame = 1 
Query:    1 MTPKNLPLFAPTRRLSSCLVALLTYGVAQAGEGALDQRPKQIHPSYLNSYLQQQQLPQQQRQQHADQLQLTPAVSTTAKLLGRITGGANXXXXXXXXXXXXXXXXXXXXXXXAAPDAIEVSGADLAESTNGRSSQRQHLDGVYVREWDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPAWKAKEESRSSAGANRYGGSSDNGLASAETQKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY 972
            MTPK  PLFAPTRRLSSCL+ALLTYGVAQAGEGALDQRPKQIHPSYL                   QLQLTPAVSTTAKLL RITG   XXXXXXXXXXXXXXXXXXXXXX AAPDAIEVSGADLAESTNGRSSQ+QHLDGVYVREWDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSP AEPRVPAWKAK ESR+SAGANRY GSSDNGLASAE QKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY
Sbjct:    1 MTPKKSPLFAPTRRLSSCLIALLTYGVAQAGEGALDQRPKQIHPSYLQQXXX---XXXXXXXXXXXQLQLTPAVSTTAKLLERITGXXXXXXXXXXXXXXXXXXXXXXXXX-AAPDAIEVSGADLAESTNGRSSQQQHLDGVYVREWDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPGAEPRVPAWKAKAESRASAGANRYSGSSDNGLASAEAQKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY 320
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BLAST of mRNA_Ecto-sp13_S_contig10028.47.1 vs. uniprot
Match: A0A4D9D6H6_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6H6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.180e-18
Identity = 72/210 (34.29%), Postives = 108/210 (51.43%), Query Frame = 1 
Query:  388 NGRSSQRQHLDGVYVR-EWDVNGAPHFKRR------------SKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPA--WKAKEESRSSAGANRYGGSSDNGLASAETQKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY 972
            N  SS R  ++GV+ R +WD NG  H+++             S        VHL++ GS+W+LHLD+D  L+ ++ L Y +V   +P RT R W +R  + W+    +R+          VP   ++ +EES S+A A          LAS  T           RL+P++  F LDAVG G+A P+LPF++M L A A QL +V++ NY
Sbjct:   70 NAPSSLRM-INGVFTRTDWDHNGRAHYEKVMTSEEMTLAQEFSVFAEERRVVHLYWHGSQWVLHLDLDPALNYDNYLGYCKVNSRDPGRTDRSWLLRENKKWLPATSLRV---------HVPGRQYEKREESASAAAA----------LASIPTPP---------RLVPVFIAFFLDAVGTGLASPLLPFYIMSLGANAFQLGLVLAFNY 250
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BLAST of mRNA_Ecto-sp13_S_contig10028.47.1 vs. uniprot
Match: A0A482SL66_9ARCH (MFS transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL66_9ARCH)

HSP 1 Score: 64.3 bits (155), Expect = 9.370e-8
Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = 1 
Query:  502 VHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPAWKAKEESRSSAGANRYGGSSDNGLASAETQKAIDDA------ALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY 972
            ++LF+TGS W L      + + +  LAYSE  +   +  T  W V++G+ +   P M +   +P+ +      K  E+              DN     ETQ    D+       + R+LLP Y  F+LDA+ +G+ +P+LPFFVMGL A A QL++VVSSNY
Sbjct:    1 MYLFWTGSVWALSYQ-SPHSNQSDLLAYSESNKPEIMSGT-SWYVKLGKKFELSPLMGV--NAPEKQ------KVNEDEE------------DN-----ETQADSTDSDNKEVLGVPRQLLPYYVAFMLDAIAVGLVMPLLPFFVMGLGADAFQLSMVVSSNY 136
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10028.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSY3_ECTSI2.880e-17991.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L781_9PHAE1.690e-16689.81MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4D9D6H6_9STRA3.180e-1834.29MFS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A482SL66_9ARCH9.370e-834.36MFS transporter n=1 Tax=archaeon TaxID=1906665 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10028contigEcto-sp13_S_contig10028:2..3331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size972
Hectar predicted targeting categorysignal peptide
Exons4
Cds size972
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462501.5613182-CDS-Ecto-sp13_S_contig10028:1..2441681462501.5613182-CDS-Ecto-sp13_S_contig10028:1..244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10028 2..244 -
1681462501.5696514-CDS-Ecto-sp13_S_contig10028:804..9421681462501.5696514-CDS-Ecto-sp13_S_contig10028:804..942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10028 805..942 -
1681462501.577379-CDS-Ecto-sp13_S_contig10028:1549..16601681462501.577379-CDS-Ecto-sp13_S_contig10028:1549..1660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10028 1550..1660 -
1681462501.5852017-CDS-Ecto-sp13_S_contig10028:2851..33311681462501.5852017-CDS-Ecto-sp13_S_contig10028:2851..3331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10028 2852..3331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10028.47.1prot_Ecto-sp13_S_contig10028.47.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10028 2..3331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10028.47.1

>prot_Ecto-sp13_S_contig10028.47.1 ID=prot_Ecto-sp13_S_contig10028.47.1|Name=mRNA_Ecto-sp13_S_contig10028.47.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=324bp
MTPKNLPLFAPTRRLSSCLVALLTYGVAQAGEGALDQRPKQIHPSYLNSY
LQQQQLPQQQRQQHADQLQLTPAVSTTAKLLGRITGGANNHRRRKHSSRH
QPAGGGGGGGGSAAPDAIEVSGADLAESTNGRSSQRQHLDGVYVREWDVN
GAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAE
VNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPAWKAKEESRSSA
GANRYGGSSDNGLASAETQKAIDDAALSRRLLPLYAVFVLDAVGLGVALP
VLPFFVMGLKATALQLAIVVSSNY
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mRNA from alignment at Ecto-sp13_S_contig10028:2..3331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10028.47.1 ID=mRNA_Ecto-sp13_S_contig10028.47.1|Name=mRNA_Ecto-sp13_S_contig10028.47.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10028:2..3331- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCCCAAGAATTTACCGCTGTTCGCCCCGACGAGGCGATTATCCTC
CTGCCTGGTTGCCCTGCTGACCTATGGCGTCGCCCAAGCGGGAGAGGGAG
CCCTGGACCAGCGCCCTAAACAAATCCATCCCTCGTACCTAAACTCGTAC
CTGCAACAGCAGCAGCTCCCCCAGCAGCAACGACAACAACACGCAGACCA
ACTCCAATTGACGCCCGCGGTATCCACGACTGCCAAGCTCCTGGGAAGAA
TCACCGGAGGCGCGAACAATCACCGCCGACGAAAGCACTCCTCCCGCCAC
CAGCCTGCGGGGGGCGGCGGCGGCGGCGGGGGTTCGGCGGCGCCTGATGC
AATAGAAGTCTCGGGAGCAGACCTCGCTGAGAGCACCAACGGCAGATCGT
CTCAGCGGCAGCACCTTGATGGGGTCTACGTCCGGGAGTGGGATGTCAAC
GGTGCACCGCACTTCAAGAGACGCAGTAAGGTGGGCGCAGGAAAGAGCAG
GAAGAACTTCGGGGGGGGGTACTGTTGTGTAGACTGAGTTGCAACCGGCC
GTTGTTCTGGTCCATTTGGAAAAATATGTACCTCGCTGCACGCTGTGGTA
TTGGCTGTATTGCAGCTCAATGACCTCGGTACGTCGTCGACGTTTCGTAA
TTCACGAACATCTGGAGATACACATGCATACGTTGCACGTACTGCTGTAG
ATACATACACAGCTTCGTTAACAAAAGAACATCGAGATACGTAACACAGA
CGAAAAATGCTTCAGCACGATGAGCTTCTGTCGTTCATTGAGGCTCGAGG
TCGCGACAAATCACAATAAAATGAAATGGTTCACGGTCTGCTTTTCGAGC
ATATCGGTCTTGTTGCCCTGTACTTCAAGCAGAACCCCTTGTACGTTGCG
CCTTGTTGTTCGGAATACGTCCTCCGCGGCGGCGGCCACTGCAACGTGCG
CCACTTGCCCACAGATGTAGCGGTGCGTTAGAGCGTACACCACGGCGCCA
AGCGTTGAACTCTCTGCAAGCGACGTGCTTTGTTTTGTAACTGAAGAAGT
CATCCCAGTATCCCGCGCAATGAAACTTGGGAGGAGGAACGAAACCGTCA
TCATTTGGATCTTGTCCTTGTCAGTACCCTTCGCAGGTTTTTCTACGAAG
TAAATATGTTGTTCGACTGCTGGGGTTATATCTCGAGTGAACAGTCTTTC
TGTGTTTGTATTTATGGTGGTCTAGTCCTTGGGGTTTCAGACCCCAGGGG
TCGGTACATCTGCGTGTCGTCCACTTGGTGAGTGATCACGGGCCCTCTAT
ATGTCGTGTGTTACCGTAGGTTGCGTAAGAATCACACCCCCTGGACCGAT
TTTAGAAGCTCGATACCTCGGCAGGAAAAGCTGTGACGGTGCCGAAAATG
ACGGCGTTGGGACCTTCTCGTCGAGAGCTTTCCCAAAAACGTACTTCGTA
TACTTTAATTTCGGCATTTTCTTCGTCGTGGAGTAATCGAGCTTTGAAAA
TCGGTCCAGGGTGTGTGATATCTTACGTCATGCAACCTGCGGTACGTCCC
AAGGGCCCCTCTTCTTCGAAGAAAACGCATCGCCGGTCGCATCCATGCAT
ACCTATCAACTGCTGCTGCGGCTTGCGTGACCCCCCGCTCTCTTGTCCCC
TTGTTTGTTGGCGTATGGAAGAGAGGAAGCCGGTCGTCTCCAGTGCACCT
GTTCTTCACGGGGAGTGAGTGGATGCTGCACCTCGACGTGGACGCTAACC
TGGACATCAACCACTGCCTGGCTTACTCGGAGGTGAGCAGTTGATGCTCT
TGGAATGGCTGCTGTAGATGACACAAGATATCACACCCCCTGTAGAACGT
TTTTCCTAAAGCCCGATTGCTCCACAGCAGAGACAATAGAGTGACGGTGC
CGAAGAATGCGACCTTTTTCGGAACCGTCTGGTCGAGAGCCTTCCGATCG
TTTCGTGCAGATATCCTCTCCGTTGTGTGGAGTAGGTCGAGCTTTGAAGA
TCGGTCAAGGGATGTGATGTCTTACGCAATTGATATCTTGCATCACTCTC
GGTACGTTGCTACTTTATACCCAAGGAAGAGGTTTCATGCGATCCAATCG
TGTTTACAACCGTGGCCCCTTTCCTTCTGATATCGAAGCCACGAGTTTTT
TCGAACCGCAACCTTTTCTCGTTCTAGAAAGGTGTTCGTCTGCGGCCACG
AAAGGTGTCAGCGTCAGTTGGACCAGTACGGGTATTAGAAGGTGCTGAGC
GTCGACCGGACTGTTTTTGATGTGAAGACAACAAGACCAGTACGGAAGGT
ACTGAGCGGAGTCCGGAGCGGTTTTAAATGTGAAGGCAACAACAACATTA
ACAACAACATTAACAACAACAACAATCTTTATCCCGCAGGTGGCGGAGGT
AAATCCGTTGAGAACGACCCGCAAGTGGGCGGTGCGCGTGGGACAGGCGT
GGGTTAGGAGGCCTCACATGAGGCTAGCGGAAACTTCTCCGGACGCCGAG
CCAAGGGTACCGGCTTGGAAGGCTAAGGTAAGGGTAGACAGTAGTAGTAG
CAGTGTAGAGATAAGGTGAGTTTGAAGACGCCCTCAAAGCAAGGAAACCT
GGTGAGATTGACGGCGCCCTTGTAGTAAGGAATTTTGATGGGCTTTGCCA
GTGCCCTCAGCACCCAGGCCCGCCCGCGCTTACCTTCTTTCGCCAGCGGT
ACAAAAAGAGCCCACCGTCCTCCGTGTGGTGTTGTAGTATCCGCGGTCTG
TTTGGGCGCCGCTTCTGCCGTTCTAATCGACGGGCGCCTGCTCATTTTGC
TACCTCCGCGCGTTTCTTTTCTGCAGGAGGCGCGGCCTGTACCCCTTCCG
CCCCGCCCCCCATGCAACGCTAGTCGTATCGAGAGGACGTTTACACGCAA
AAAGAGCCATCGCCGCCGCCTCCCCTCTCGTTCCTTCAGCAGGAGTTGCC
GCCTACACCCCTCCCATCCCCCCTGTGTAACGCTAGTCGTAGCCAGAGCG
CGTTTACGCACATACACCCACCATGCGCCGTCGCCATTCACGCAAGACGC
GTCACCGCCCCCCCCACCCCCCTTGCCTCTTCAGCAGGAGGAGAGTCGAT
CATCAGCAGGGGCCAACCGCTACGGCGGGAGCAGCGATAACGGCCTGGCT
TCTGCGGAGACCCAGAAGGCCATCGACGACGCGGCCCTTAGCCGGAGGCT
GCTGCCCCTGTACGCGGTTTTCGTGCTTGACGCGGTGGGGCTGGGGGTAG
CCCTGCCCGTGCTGCCGTTCTTCGTTATGGGGCTCAAGGCTACGGCGCTG
CAGCTGGCCATCGTTGTTTCTTCCAACTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10028:2..3331-

>mRNA_Ecto-sp13_S_contig10028.47.1 ID=mRNA_Ecto-sp13_S_contig10028.47.1|Name=mRNA_Ecto-sp13_S_contig10028.47.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=972bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10028:2..3331- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCCCAAGAATTTACCGCTGTTCGCCCCGACGAGGCGATTATCCTC
CTGCCTGGTTGCCCTGCTGACCTATGGCGTCGCCCAAGCGGGAGAGGGAG
CCCTGGACCAGCGCCCTAAACAAATCCATCCCTCGTACCTAAACTCGTAC
CTGCAACAGCAGCAGCTCCCCCAGCAGCAACGACAACAACACGCAGACCA
ACTCCAATTGACGCCCGCGGTATCCACGACTGCCAAGCTCCTGGGAAGAA
TCACCGGAGGCGCGAACAATCACCGCCGACGAAAGCACTCCTCCCGCCAC
CAGCCTGCGGGGGGCGGCGGCGGCGGCGGGGGTTCGGCGGCGCCTGATGC
AATAGAAGTCTCGGGAGCAGACCTCGCTGAGAGCACCAACGGCAGATCGT
CTCAGCGGCAGCACCTTGATGGGGTCTACGTCCGGGAGTGGGATGTCAAC
GGTGCACCGCACTTCAAGAGACGCAGTAAGAGAGGAAGCCGGTCGTCTCC
AGTGCACCTGTTCTTCACGGGGAGTGAGTGGATGCTGCACCTCGACGTGG
ACGCTAACCTGGACATCAACCACTGCCTGGCTTACTCGGAGGTGGCGGAG
GTAAATCCGTTGAGAACGACCCGCAAGTGGGCGGTGCGCGTGGGACAGGC
GTGGGTTAGGAGGCCTCACATGAGGCTAGCGGAAACTTCTCCGGACGCCG
AGCCAAGGGTACCGGCTTGGAAGGCTAAGGAGGAGAGTCGATCATCAGCA
GGGGCCAACCGCTACGGCGGGAGCAGCGATAACGGCCTGGCTTCTGCGGA
GACCCAGAAGGCCATCGACGACGCGGCCCTTAGCCGGAGGCTGCTGCCCC
TGTACGCGGTTTTCGTGCTTGACGCGGTGGGGCTGGGGGTAGCCCTGCCC
GTGCTGCCGTTCTTCGTTATGGGGCTCAAGGCTACGGCGCTGCAGCTGGC
CATCGTTGTTTCTTCCAACTAC
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