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Homology
BLAST of mRNA_Ecto-sp13_S_contig1653.4700.1 vs. uniprot
Match: A0A6H5JYL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL5_9PHAE) HSP 1 Score: 681 bits (1757), Expect = 3.770e-237 Identity = 426/542 (78.60%), Postives = 458/542 (84.50%), Query Frame = 1
Query: 721 MAPPDNSIIRENTQEPSHLSQGNAIYEQVTQQPXXXXXXXXXXXXXXXXXXXXXXXXXXRLQEPEDDNQQHQQEMCGLPGSGEARLDAQENSDDGVSDFANDDESTSKNGRSGRASGCCDGGDRTGAGSTHSSDPIGSPSFEKPDNQETSAFAADGPANRLNEVEDGRSSSGHVDSRSSGANRKVGEGDMEVTEGAEDIGSGEDGNLPEEELAAVRDQREREAIIREKVGDGFLKITNSYMTASSAIKGVQAEQARILKGENEIKEGLTKFSLRVRKATDALQTQLMAALRGEPSGAEEETPLTAEVEQRDRVCTGMIGEHHHLESTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPLAGTRIANSSTLSRMKFNGEQPSDSAQVDDGIGRASRRSSSSAIDRVANRMLSRQEQVHLAAGQSDCRSAPTSDTMKGKGSTNGTEMEEVGLSRTHPLHAAAARGFNGXXXXXXXXXXXXX-----GIPPALSHKRPRLNPAPTLAQTREAGATVGPGGWTRPAF 2331
M PP +S+IR +TQEPSHLS+G+AIYEQ TQQP RLQEPEDDNQQHQQE CGLPGSGEARLDA+E+SDDGVSD+ANDDESTSK+GRSGR S CC GGDRTGAG+T SSDPIGS SFEK DNQ TSAFAADGPANRLNE+EDGR+SSG VDSRSSGA+RK GEGDME TEGA+D+ SGEDG+LPEEELA VRDQR+REAIIR+KVGDGF KITNSYMTASSAIK V+AEQAR+LKGENEIKEGLTKFSLRVRKATDALQTQL+AALRGEPSGAEEETPLTAE+EQRDRVCTGMIGEHH LESTG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GPLAGTRI +SST+SRMKFN QPSDSA+VD GIGRASRR SSSAIDR+A+RM SR+EQVHLAAGQSDC SA TSDTM G GST+GT+MEEVGL+RTH LHA ARG N XXXXXXXXXXXXX GIPPA HKRPRLNPAPTLAQTR+AGATVGPGGWTRPAF
Sbjct: 1 MEPPGDSVIRVDTQEPSHLSRGDAIYEQATQQPPPRASDENEMFDQQTQEQSPLRSCRERLQEPEDDNQQHQQETCGLPGSGEARLDAEEHSDDGVSDYANDDESTSKSGRSGRTSDCCAGGDRTGAGATDSSDPIGSCSFEKSDNQATSAFAADGPANRLNEMEDGRASSGRVDSRSSGADRKGGEGDMEATEGAKDMSSGEDGSLPEEELAVVRDQRKREAIIRKKVGDGFQKITNSYMTASSAIKEVEAEQARMLKGENEIKEGLTKFSLRVRKATDALQTQLLAALRGEPSGAEEETPLTAELEQRDRVCTGMIGEHHDLESTGHHSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSDATAASGGGGPLAGTRIVDSSTMSRMKFNCRQPSDSAEVDGGIGRASRRISSSAIDRLADRMPSREEQVHLAAGQSDCGSATTSDTMNGMGSTSGTDMEEVGLARTHSLHAEGARGCNXXXXXXXXXXXXXXXXXSSGIPPAFPHKRPRLNPAPTLAQTRDAGATVGPGGWTRPAF 542
BLAST of mRNA_Ecto-sp13_S_contig1653.4700.1 vs. uniprot
Match: D7G8C0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C0_ECTSI) HSP 1 Score: 484 bits (1247), Expect = 1.260e-162 Identity = 286/328 (87.20%), Postives = 302/328 (92.07%), Query Frame = 1
Query: 721 MAPPDNSIIRENTQEPSHLSQGNAIYEQVTQQPXXXXXXXXXXXXXXXXXXXXXXXXXXRLQEPEDDNQQHQQEMCGLPGSGEARLDAQENSDDGVSDFANDDESTSKNGRSGRASGCCDGGDRTGAGSTHSSDPIGSPSFEKPDNQETSAFAADGPANRLNEVEDGRSSSGHVDSRSSGANRKVGEGDMEVTEGAEDIGSGEDGNLPEEELAAVRDQREREAIIREKVGDGFLKITNSYMTASSAIKGVQAEQARILKGENEIKEGLTKFSLRVRKATDALQTQLMAALRGEPSGAEEETPLTAEVEQRDRVCTGMIGEHHHLESTG 1704
MAPP +SIIRE+TQEPSHLSQG+ I EQ TQQP XXXXXXXXXXXXXXXXXXX RLQEPEDDNQQHQQE+CGLPGSGEARLDA+E+SDDG SD+ANDDESTSKNGRSGRASGCC GGDRTGAG+T SSDPIGS SFEKPDNQ TSAFAA PAN LNEVEDGR+SS VDSRSSGA+RK GEGDMEVTEGAED+GSGED NLPEEELA VRDQREREAIIREKVGDGFLKIT+SY TASSAIKGV+AEQAR+LKGENEIKEGLTKFSLRVRKATDALQTQL+AALRGEPSGAEEETPLTAE+EQRDRVCTGMIGEHH LESTG
Sbjct: 1 MAPPGDSIIREDTQEPSHLSQGDDINEQATQQPPPRAXXXXXXXXXXXXXXXXXXXRRERLQEPEDDNQQHQQEICGLPGSGEARLDAEEHSDDGASDYANDDESTSKNGRSGRASGCCAGGDRTGAGATDSSDPIGSSSFEKPDNQATSAFAAKEPANCLNEVEDGRASSAGVDSRSSGADRKGGEGDMEVTEGAEDMGSGEDENLPEEELAVVRDQREREAIIREKVGDGFLKITDSYTTASSAIKGVKAEQARMLKGENEIKEGLTKFSLRVRKATDALQTQLLAALRGEPSGAEEETPLTAELEQRDRVCTGMIGEHHDLESTG 328
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 0 |
| Model size | 2335 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-19_003910.1 |
| Cds size | 2334 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462868.9292145-CDS-Ecto-sp13_S_contig1653:12040..12709 | 1681462868.9292145-CDS-Ecto-sp13_S_contig1653:12040..12709 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1653 12041..12709 - |
| 1681462868.938794-CDS-Ecto-sp13_S_contig1653:12963..13146 | 1681462868.938794-CDS-Ecto-sp13_S_contig1653:12963..13146 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1653 12964..13146 - |
| 1681462868.9478045-CDS-Ecto-sp13_S_contig1653:13982..15464 | 1681462868.9478045-CDS-Ecto-sp13_S_contig1653:13982..15464 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1653 13983..15464 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1653.4700.1 >prot_Ecto-sp13_S_contig1653.4700.1 ID=prot_Ecto-sp13_S_contig1653.4700.1|Name=mRNA_Ecto-sp13_S_contig1653.4700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=778bp
VTIRDNFDVGNDIVTSHARTESAAMTDYCAPLRHHAAGPLPHSGGALGSF VGGDHGGNPGGTSPFNPNRRSASEGPPGRSLGGNHDSHSRLCAEKDESQG SDHEEDAETRDEFFNGGYTGIESEDESESAEVGDGNLRDHSARYSRFDQE EEETTVDGGEEQHEREQSKHPGVTGRSNGDATGGGSSSSGSNGGSSGSSG LRSHQLRAPQHPEQAEEAKREQQQQQQEPRAVEGVRARCPMAPPDNSIIR ENTQEPSHLSQGNAIYEQVTQQPPPPASDENETFDQQTQEQSPQRSRRER LQEPEDDNQQHQQEMCGLPGSGEARLDAQENSDDGVSDFANDDESTSKNG RSGRASGCCDGGDRTGAGSTHSSDPIGSPSFEKPDNQETSAFAADGPANR LNEVEDGRSSSGHVDSRSSGANRKVGEGDMEVTEGAEDIGSGEDGNLPEE ELAAVRDQREREAIIREKVGDGFLKITNSYMTASSAIKGVQAEQARILKG ENEIKEGLTKFSLRVRKATDALQTQLMAALRGEPSGAEEETPLTAEVEQR DRVCTGMIGEHHHLESTGHHSREESAASASSTKSTAIDNQGERRAALNHS PRRATSGATAVGGGGGPLAGTRIANSSTLSRMKFNGEQPSDSAQVDDGIG RASRRSSSSAIDRVANRMLSRQEQVHLAAGQSDCRSAPTSDTMKGKGSTN GTEMEEVGLSRTHPLHAAAARGFNGGGGGGSSSSSSSSGIPPALSHKRPR LNPAPTLAQTREAGATVGPGGWTRPAF* back to topmRNA from alignment at Ecto-sp13_S_contig1653:12041..15464- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1653.4700.1 ID=mRNA_Ecto-sp13_S_contig1653.4700.1|Name=mRNA_Ecto-sp13_S_contig1653.4700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3424bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1653:12041..15464- (Ectocarpus species13 EcNAP12_S_4_19m) GTGACCATCCGCGACAACTTCGACGTAGGTAACGACATCGTCACCAGTCA
CGCACGGACGGAGTCTGCAGCAATGACGGACTACTGTGCTCCACTACGCC
ACCATGCGGCCGGGCCACTTCCGCATTCGGGCGGTGCTCTGGGAAGCTTC
GTCGGCGGGGATCACGGTGGGAATCCTGGGGGCACGAGCCCTTTCAACCC
GAACCGACGTTCAGCTTCTGAGGGCCCTCCCGGCCGTTCTCTCGGCGGAA
ATCATGACTCTCACAGCCGTTTGTGCGCAGAGAAGGACGAGTCGCAGGGC
AGTGACCATGAGGAGGACGCGGAGACCCGAGACGAATTCTTCAACGGTGG
CTACACTGGAATAGAGTCGGAGGATGAAAGCGAGAGTGCTGAAGTCGGTG
ACGGCAACCTGCGTGACCACAGCGCAAGGTACTCTCGGTTTGATCAGGAA
GAGGAGGAAACGACCGTGGACGGCGGAGAAGAGCAGCATGAGAGGGAACA
GAGCAAGCACCCGGGGGTTACCGGACGTTCGAACGGTGACGCCACGGGTG
GGGGAAGCAGCAGCAGCGGCAGTAACGGTGGCAGCAGCGGGAGCAGTGGT
CTGCGATCACACCAACTCCGTGCACCCCAACACCCCGAGCAAGCCGAAGA
AGCAAAGAGAGAGCAGCAGCAGCAGCAGCAGGAACCCCGGGCGGTCGAGG
GAGTACGTGCACGCTGTCCTATGGCGCCCCCAGATAACAGCATTATCAGA
GAGAACACGCAAGAACCGTCGCACCTGTCACAGGGGAATGCCATCTATGA
GCAGGTCACCCAACAACCCCCACCGCCGGCGTCGGACGAGAACGAAACAT
TCGATCAGCAGACGCAGGAACAGTCTCCGCAGAGGTCCCGTCGGGAAAGG
CTTCAGGAACCAGAGGACGACAACCAGCAACACCAGCAGGAGATGTGTGG
GCTTCCAGGTTCTGGTGAGGCGCGACTCGACGCGCAGGAAAACAGTGACG
ATGGTGTTTCTGACTTTGCCAACGATGATGAGAGCACCTCCAAGAACGGT
CGCTCCGGCCGTGCCAGCGGCTGCTGCGACGGCGGAGACCGCACCGGTGC
CGGCTCCACCCACAGCTCCGACCCGATCGGTTCTCCTTCGTTCGAAAAGC
CCGACAACCAGGAAACATCCGCCTTTGCCGCCGACGGGCCTGCGAATCGC
CTGAACGAGGTGGAGGATGGCAGGTCTAGCAGTGGCCATGTTGACTCGAG
GTCATCCGGAGCTAACCGAAAGGTGGGGGAAGGCGACATGGAGGTGACGG
AGGGTGCCGAAGACATAGGCAGCGGTGAAGATGGAAACCTCCCAGAGGAA
GAGCTAGCTGCTGTGCGCGACCAGCGGGAGAGGGAGGCCATCATCCGGGA
GAAGGTCGGGGATGGATTCCTGAAAATCACCAATTCCTACATGACCGCAA
GCAGCGCCATCAAAGGGGTTCAGGCAGAGCAGGTGCATGCATACACGTAC
TGGCAAGGATATTCTGGAAATGTATTTGGCCGCGTGGCGCACGTGACGAA
ACCCCCATGCCTCGTACACGCAGATGCTTTGTCCATGAAGGTAATCTCAA
GTGTCATACATACGATGTTTCACGAAAACCTCGGTGAAGGATGACCTCTG
TTGTCAGATTCTGTGCTTACGCCGGCTGGATCTTTTGCTGTAGGTCCTTT
CCATCCCGAAGCAGAAACCAAACCGTATTTTACGTGCGGCAATCTCTGCT
GCTTTCTCACTTTCGACGAGACAACATCTGAGCTGTAAAGGACTACAAGA
CTGGCGTCGATTACGGTCCGTTGGCGTTGTTTGTGGCGTCAGCCACACGA
TACTCATCCGCTCCTTTTCCCTGACTCGCCCTTCTTCCAGGATACGTCAC
CCGACAAATTGTCCTCTTAACCCTACCCTCCCATGTCGGGGCAGATCCTA
GACTAGCTCATTTTTTCGCGGACGCGCTGTGTTGTGCGAAATGTTCATGG
ATACTATGTGGACGACAGCCTACCCAGACAACACCGACACACATCACAAA
GCGTGACGGGAAAACGTCGACTTTTTTCAGAACTGCTGTTGAAACTGCTT
GTTTTGTATTGAAAGAACCCATTCCAGTCTCTGCTCAGTTCCTCGTGCAA
CTGACGTGGACGCCTGCCGTGGTCACAACCCAATTGCCCCCAAATGGGTC
TCCTCTTGACAAACATAGTTCTCAAAACAAGCATTGAAGTAGTACGAGTA
CAGGATAATCTGTGAAACTTTTGAACGACGCCATGCCACGAAATGCGTTT
TTGGGTTGGCGCCTTCAGGCAAGAATACTCAAGGGAGAAAACGAGATCAA
AGAAGGGCTCACAAAGTTCAGCTTGCGAGTTAGGAAGGCCACCGATGCCT
TGCAGACGCAGCTAATGGCGGCGCTTAGAGGTGAACCCAGCGGCGCGGAG
GAAGAGACCCCGCTGACTGCCGAGGTTGAGCAGCGCGACCGTGTGTGTAC
GGTGAGTGGTTTACGTACTTAGTCTCGTCAACCCTCTTGAGGACTCTGCT
TGTTGGCAGCAAGCAAGAATCAGTGAATTATTGACTCAGGCATCGGCGTT
TCTGTAAGTCTCAACCCCTGGCTTGCTGCTGAAACTGCGTCCGACTTGAT
GCAGGGAGGAAGCGCTCGTACATGTGGTCCGTGTCGTAGCGGGAGACATT
GTTCAGTGAACCGTCCACTCACATGCTATTGTTCTGAAACAATCACTAAT
TACAGGGTATGATCGGCGAACATCACCACCTAGAATCAACTGGACACCAC
TCGCGGGAAGAGAGTGCAGCATCCGCCTCCTCCACCAAGTCAACTGCCAT
CGACAATCAGGGCGAGCGGCGCGCTGCTCTCAACCATTCCCCTCGCAGAG
CCACCAGTGGTGCTACCGCTGTCGGCGGTGGTGGCGGTCCTCTCGCCGGA
ACCAGGATAGCCAACTCCTCTACCTTGAGCCGAATGAAATTCAACGGTGA
ACAGCCGTCTGATAGCGCTCAAGTCGACGATGGGATTGGTCGGGCCTCTC
GCCGCTCTTCGTCAAGTGCGATTGACAGGGTCGCCAACAGGATGCTGAGC
CGACAGGAGCAAGTGCACCTTGCGGCTGGACAGTCGGATTGTCGTTCTGC
TCCCACAAGCGACACGATGAAGGGCAAAGGCAGCACGAATGGCACCGAGA
TGGAGGAGGTTGGCCTTTCACGTACCCACCCGCTCCATGCTGCGGCAGCG
AGGGGTTTCAATGGCGGTGGCGGCGGCGGCAGCAGCAGCAGCAGCAGCAG
CAGCGGCATTCCCCCCGCGCTTTCTCACAAACGCCCCCGCCTCAACCCCG
CTCCCACACTAGCACAGACTCGCGAGGCAGGTGCGACTGTTGGCCCGGGC
GGTTGGACGCGCCCGGCGTTTTAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1653:12041..15464- >mRNA_Ecto-sp13_S_contig1653.4700.1 ID=mRNA_Ecto-sp13_S_contig1653.4700.1|Name=mRNA_Ecto-sp13_S_contig1653.4700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2334bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1653:12041..15464- (Ectocarpus species13 EcNAP12_S_4_19m) GTGACCATCCGCGACAACTTCGACGTAGGTAACGACATCGTCACCAGTCA CGCACGGACGGAGTCTGCAGCAATGACGGACTACTGTGCTCCACTACGCC ACCATGCGGCCGGGCCACTTCCGCATTCGGGCGGTGCTCTGGGAAGCTTC GTCGGCGGGGATCACGGTGGGAATCCTGGGGGCACGAGCCCTTTCAACCC GAACCGACGTTCAGCTTCTGAGGGCCCTCCCGGCCGTTCTCTCGGCGGAA ATCATGACTCTCACAGCCGTTTGTGCGCAGAGAAGGACGAGTCGCAGGGC AGTGACCATGAGGAGGACGCGGAGACCCGAGACGAATTCTTCAACGGTGG CTACACTGGAATAGAGTCGGAGGATGAAAGCGAGAGTGCTGAAGTCGGTG ACGGCAACCTGCGTGACCACAGCGCAAGGTACTCTCGGTTTGATCAGGAA GAGGAGGAAACGACCGTGGACGGCGGAGAAGAGCAGCATGAGAGGGAACA GAGCAAGCACCCGGGGGTTACCGGACGTTCGAACGGTGACGCCACGGGTG GGGGAAGCAGCAGCAGCGGCAGTAACGGTGGCAGCAGCGGGAGCAGTGGT CTGCGATCACACCAACTCCGTGCACCCCAACACCCCGAGCAAGCCGAAGA AGCAAAGAGAGAGCAGCAGCAGCAGCAGCAGGAACCCCGGGCGGTCGAGG GAGTACGTGCACGCTGTCCTATGGCGCCCCCAGATAACAGCATTATCAGA GAGAACACGCAAGAACCGTCGCACCTGTCACAGGGGAATGCCATCTATGA GCAGGTCACCCAACAACCCCCACCGCCGGCGTCGGACGAGAACGAAACAT TCGATCAGCAGACGCAGGAACAGTCTCCGCAGAGGTCCCGTCGGGAAAGG CTTCAGGAACCAGAGGACGACAACCAGCAACACCAGCAGGAGATGTGTGG GCTTCCAGGTTCTGGTGAGGCGCGACTCGACGCGCAGGAAAACAGTGACG ATGGTGTTTCTGACTTTGCCAACGATGATGAGAGCACCTCCAAGAACGGT CGCTCCGGCCGTGCCAGCGGCTGCTGCGACGGCGGAGACCGCACCGGTGC CGGCTCCACCCACAGCTCCGACCCGATCGGTTCTCCTTCGTTCGAAAAGC CCGACAACCAGGAAACATCCGCCTTTGCCGCCGACGGGCCTGCGAATCGC CTGAACGAGGTGGAGGATGGCAGGTCTAGCAGTGGCCATGTTGACTCGAG GTCATCCGGAGCTAACCGAAAGGTGGGGGAAGGCGACATGGAGGTGACGG AGGGTGCCGAAGACATAGGCAGCGGTGAAGATGGAAACCTCCCAGAGGAA GAGCTAGCTGCTGTGCGCGACCAGCGGGAGAGGGAGGCCATCATCCGGGA GAAGGTCGGGGATGGATTCCTGAAAATCACCAATTCCTACATGACCGCAA GCAGCGCCATCAAAGGGGTTCAGGCAGAGCAGGCAAGAATACTCAAGGGA GAAAACGAGATCAAAGAAGGGCTCACAAAGTTCAGCTTGCGAGTTAGGAA GGCCACCGATGCCTTGCAGACGCAGCTAATGGCGGCGCTTAGAGGTGAAC CCAGCGGCGCGGAGGAAGAGACCCCGCTGACTGCCGAGGTTGAGCAGCGC GACCGTGTGTGTACGGGTATGATCGGCGAACATCACCACCTAGAATCAAC TGGACACCACTCGCGGGAAGAGAGTGCAGCATCCGCCTCCTCCACCAAGT CAACTGCCATCGACAATCAGGGCGAGCGGCGCGCTGCTCTCAACCATTCC CCTCGCAGAGCCACCAGTGGTGCTACCGCTGTCGGCGGTGGTGGCGGTCC TCTCGCCGGAACCAGGATAGCCAACTCCTCTACCTTGAGCCGAATGAAAT TCAACGGTGAACAGCCGTCTGATAGCGCTCAAGTCGACGATGGGATTGGT CGGGCCTCTCGCCGCTCTTCGTCAAGTGCGATTGACAGGGTCGCCAACAG GATGCTGAGCCGACAGGAGCAAGTGCACCTTGCGGCTGGACAGTCGGATT GTCGTTCTGCTCCCACAAGCGACACGATGAAGGGCAAAGGCAGCACGAAT GGCACCGAGATGGAGGAGGTTGGCCTTTCACGTACCCACCCGCTCCATGC TGCGGCAGCGAGGGGTTTCAATGGCGGTGGCGGCGGCGGCAGCAGCAGCA GCAGCAGCAGCAGCGGCATTCCCCCCGCGCTTTCTCACAAACGCCCCCGC CTCAACCCCGCTCCCACACTAGCACAGACTCGCGAGGCAGGTGCGACTGT TGGCCCGGGCGGTTGGACGCGCCCGGCGTTTTAG back to top
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