mRNA_Ecto-sp13_S_contig16528.4699.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16528.4699.1
Unique NamemRNA_Ecto-sp13_S_contig16528.4699.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16528.4699.1 vs. uniprot
Match: D8LIG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG6_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 3.980e-92
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 1 
Query:   13 FAAAFSMVEQALELSPLDHAEAMGLETWEAAGSSGTIAGFKGRKVDWVSHCTIKEPDGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWWDAIMQNPNVVPAKVSS 417
            FAAAFSMVEQALELSPLDHAEAMGLETWEAAGSSGTIAGFKGRKVDWVSHCTI EPDGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWWDAIMQNPNVVPAK SS
Sbjct:  159 FAAAFSMVEQALELSPLDHAEAMGLETWEAAGSSGTIAGFKGRKVDWVSHCTINEPDGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWWDAIMQNPNVVPAKASS 293
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BLAST of mRNA_Ecto-sp13_S_contig16528.4699.1 vs. uniprot
Match: A0A6H5JAD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAD8_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 1.310e-89
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 1 
Query:   13 FAAAFSMVEQALELSPLDHAEAMGLETWEAAGSSGTIAGFKGRKVDWVSHCTIKEPDGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWWDAIMQNPNVVPAKVS 414
            FAAAFSMVEQALELSPLDHAEAMGLETWEAAGSSGTIAGFKG+KVDWVS CTI E DGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWW+AIMQNPNVVPAKVS
Sbjct:   16 FAAAFSMVEQALELSPLDHAEAMGLETWEAAGSSGTIAGFKGKKVDWVSRCTINEADGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWWEAIMQNPNVVPAKVS 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16528.4699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIG6_ECTSI3.980e-9298.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAD8_9PHAE1.310e-8996.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16528contigEcto-sp13_S_contig16528:502..3574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score270.4
Seed ortholog evalue4.3e-70
Seed eggNOG ortholog2880.D8LIG6
Model size417
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2CHM3@1,2T2RF@2759
Ec32 ortholog descriptionRed chlorophyll catabolite reductase
Ec32 orthologEc-18_003740.1
Cds size387
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16528.4699.1prot_Ecto-sp13_S_contig16528.4699.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16528 502..3544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462868.8383207-CDS-Ecto-sp13_S_contig16528:501..6041681462868.8383207-CDS-Ecto-sp13_S_contig16528:501..604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16528 502..604 -
1681462868.8510482-CDS-Ecto-sp13_S_contig16528:1334..13771681462868.8510482-CDS-Ecto-sp13_S_contig16528:1334..1377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16528 1335..1377 -
1681462868.8621864-CDS-Ecto-sp13_S_contig16528:1878..19361681462868.8621864-CDS-Ecto-sp13_S_contig16528:1878..1936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16528 1879..1936 -
1681462868.8711987-CDS-Ecto-sp13_S_contig16528:2821..28901681462868.8711987-CDS-Ecto-sp13_S_contig16528:2821..2890Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16528 2822..2890 -
1681462868.882275-CDS-Ecto-sp13_S_contig16528:3430..35441681462868.882275-CDS-Ecto-sp13_S_contig16528:3430..3544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16528 3431..3544 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462868.8969684-UTR-Ecto-sp13_S_contig16528:3544..35741681462868.8969684-UTR-Ecto-sp13_S_contig16528:3544..3574Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16528 3545..3574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16528.4699.1

>prot_Ecto-sp13_S_contig16528.4699.1 ID=prot_Ecto-sp13_S_contig16528.4699.1|Name=mRNA_Ecto-sp13_S_contig16528.4699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
MVEQALELSPLDHAEAMGLETWEAAGSSGTIAGFKGRKVDWVSHCTIKEP
DGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAY
REQYYGGPTTAWWDAIMQNPNVVPAKVSS
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mRNA from alignment at Ecto-sp13_S_contig16528:502..3574-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16528.4699.1 ID=mRNA_Ecto-sp13_S_contig16528.4699.1|Name=mRNA_Ecto-sp13_S_contig16528.4699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3073bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16528:502..3574- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGCGCCGGGTTCGCTGCGGCGTTTTCGATGGTGGAGCAAGCGCTAGA
GCTCTCTCCGCTCGACCACGCCGAGGCGATGGGTTTGGAAACTTGGGAGG
CCGCGGGAAGCAGCGGCACGATCGCGGGGTTCAAGGGGAGGAAGGTTTGC
AGAAAATACAGCATATGTAGATGATAAAGTAATTCTGCCCCGGAACGGTT
GATTGCGTCTTGTAATGAGTCCCCCTTTGTAAAAGGGTCAAGTGCTTAAC
CTGGTTGAGCTCTCGTAAGCATACATCAGATGTTACCGATGTGCTACATG
TCATTTCCAACAAGAGAGCTCTGAACGTGAGTGGGTATGCCTTACGGCAA
AATTGTAAGAATCAGGTTATCCACCCTCTTCAATACCCAAACATTGTCGC
CTTTCCTTCAAGACTGTCCATTGTAGTTATGTGACCAAGCAGGAAGTGAC
CCCCTCGCTCCCCTCCCCAGAGGTGCATGTAGCTGAAGAATAAGAATACT
CCAACAAGACGCAACCAACCATGCGGCAGCCTTCTCTTCCAGGGGCTGCT
GTTGAAGACCAGCATGGTGGTGGCACCATCCCATCGAACGGATGCAGACA
AAAAAACGACCCAAACGTTTCAAGGCATCGCCAACAACGAACGAGTCCAT
AAGCTCTCTTAGTTCTCCTTCTTGCCCGCCACAGGTCGACTGGGTGTCCC
ACTGCACCATCAAGGAGCCTGACGGCAGCACTCGCGAGTGCCTGCGCGCG
TGGGTGAGTCCTGAGGCGACGGGCGTAAGCGTAGCGCTCGCCCTGGTGTT
CGTAAGGGTCAGCACACGGGTACTGCTGTAGCATGGAGTCTTCAGGATCC
TGTCGTGGGGAAGGGCTCGGCTCAAAGCCGAGTGCACGTTTCTATCCAGT
GTCAACGTTGTACATACATCACCAGGAATTTTGGTCTCACCTCGTGGCAC
GCCTAGCCCCAAGAAGGGACGCGAATAGGGTCGTGCCTCCCCCCCTCCTA
CCTACAACGTTGGAGTGCCGGTTTTTCTCTTGAGACTTGAGAAGAATTGC
GAAAAAACTGGATGCTGGACAGCTAGCTTTTTTAGCGAGTGGGAGCGCCC
CGTGCCTCTCCAGCCCCCTTGCTCTAACACGCAGCTTTTGAGTGTCCCCA
CCACATGAATTTTACGACGGTTATTATGTTTTCAGCAGTTATTTCCTGAA
AAGGGCCATACTTCCAAGTCAACATTACTCCAACTACAACCTTCGGCCTA
CTGTATGCATGTAAAAGGACGAAATACCTACTTCCAAGTCGAGATTACTG
AACTACAACCTTGGGCCCTGTGCATGAAAAAGGAATGAAAAACTGGAATT
TTCTGTTCTTGTTTTGCGGACCTGCATCGTCGGTGGCATGTGTGTCCCTG
CCCGGGGGCGTACGGTGCGGTTGGAGCACGGCACGCAGGGCGCCACCGAA
ATTTCGGCTCAAGGTTCACTTTGGGCCATAGATGACAGAAACAGTGTCGA
CACAAGCTTCTCTTTGAGCGATACAACGGCAGAAAAAACAGTCGTACGTA
CTTCTCTTCTTCGTTCGTCTACTTTCCTTCGCCGATTGCGTTCTTCGCCC
CGCCGTGTCATGTGTCGCGTTCTCGTGGAACTCACCAGGTCATGCCGATG
TTTGACGTGCCTCACCTCTCCATCACTCTCGGGAGTGGCCCTAACGGTGA
GAGCGTGGTGTCTCCCTTCCTCTTCCGCCTGCTTTCATTTGTGTTTTTGT
GGTTCGCTCTCGCAGTGTTTTTTTGTTGTTTGGGGTGATGTGATAGATAG
TGGTCGGCTTGTCGTGTCGTACGTTGCCGTGCCGTGATGTTGTTTCATGC
TTCCACCGGACAGGGTTTGCAGTACCATATCATGCTCTTTGCAGGCCATT
TCGATAGCAAGAACGCGAACGAAACAGCTACCGCCGCAGTTTCATACCCC
AGAACCCGTTGGCCATCTACCTGGGGAAGGGCGACAGTATGGAGGTGCTG
GATAGAGAAAAAAAATGCATTGCCGTGACAGCAACAGCAACAAGAACAAG
AATGACGACGACGACGACGACAAACAACAATCAGCAACAGCAGCAAATCT
TGACTATCTCACCTTCTCTCTCGCGCCTCCGTCTTTTTTCCATGCATGCA
ATTTATGAAACTTCCAACCGTCTCTACGGCGGGGTAACTGATGGTAGGTC
TCACGGCGGAGATGGACCTGGTCGCCAAAGATGACGTCATGTAAGTTTTT
TTTTTGTAGCTTTTGGGCATCTGCCATCGCCATTTAGCTGACGAAAACGC
TGATGCTTTGGTTCTGGAAGAGCACTGCGGGCTGCCGATGCTGTTGTTCG
CTGTTGGGCTCTACCTACGTCAGATGTTATCTTTCCAATGTGCTTCCCGC
AAGGGTGCTTGTAATACCCACAACCAGGAGATGTCGGGAGTATGAATCGG
ACGTTTGAGCAAGTGTTAAGTGTTTACAATAGCTCGTCCGATCTACGCTA
TGGAGACTATGATAGTCTAGGTATATCGCCTCCAGCCATCTCGGCACAGC
CGGGGGGCACGGCAGATTGTACTGTGAACTTGTCACGGGGAAGTGAGGGT
CCTCCTGTTGAGCTCTACTGGATGAACGCTTGCTTCACCAACACGACCTT
GTCGGTTATTCCGGTACGATGCTGCATCGGCGACTGCTCGCCGCCAGTGG
CCTTGCCGATGCCGTCGCCCTTACAAGTTGCATTTTCCCACGGTGATGCC
GTCGTGTAGCCTTTAGCCCTGCTGATGCCGTTACCCGCGCTCGTCGCGTT
GTACACGAGACGGTGACAGCGTGTAGCTCAACCCTGCTGATGCCGTTCTT
GGCACGATGATGACGTCAGCAACCCTGCTGCTGTTTGCAGGCTGCGTTTC
AGCACGAGACGGCGGTAACGGCGAGTAGTTCGTGCCGCCCAATCCCGTGA
CTTCTTTTTTTATTGTGCAGGTACGCCAAGGCTTACCGCGAGCAGTACTA
CGGTGGGCCGACGACGGCGTGGTGGGACGCGATCATGCAGAACCCGAACG
TGGTCCCGGCTAAGGTTAGTAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16528:502..3574-

>mRNA_Ecto-sp13_S_contig16528.4699.1 ID=mRNA_Ecto-sp13_S_contig16528.4699.1|Name=mRNA_Ecto-sp13_S_contig16528.4699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16528:502..3574- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGAGCAAGCGCTAGAGCTCTCTCCGCTCGACCACGCCGAGGCGAT
GGGTTTGGAAACTTGGGAGGCCGCGGGAAGCAGCGGCACGATCGCGGGGT
TCAAGGGGAGGAAGGTCGACTGGGTGTCCCACTGCACCATCAAGGAGCCT
GACGGCAGCACTCGCGAGTGCCTGCGCGCGTGGGTCATGCCGATGTTTGA
CGTGCCTCACCTCTCCATCACTCTCGGGAGTGGCCCTAACGGTCTCACGG
CGGAGATGGACCTGGTCGCCAAAGATGACGTCATGTACGCCAAGGCTTAC
CGCGAGCAGTACTACGGTGGGCCGACGACGGCGTGGTGGGACGCGATCAT
GCAGAACCCGAACGTGGTCCCGGCTAAGGTTAGTAGC
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