mRNA_Ecto-sp13_S_contig16526.4698.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16526.4698.1
Unique NamemRNA_Ecto-sp13_S_contig16526.4698.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16526.4698.1 vs. uniprot
Match: A0A6H5KLN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN4_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 7.570e-40
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 3 
Query:    3 DTVLMAALRTGRHAAALLLLQALAVPTAAAHTFRYAWVIAAALRLAELCPCPSCVLGRTADERTRLCSKIAPKPTRPGEQP 245
            DTVLMAALR GRH+AALLLL+ALAVPTAAAHTFRYAWVIAAALRL+ELCPCPSCVLGRTADER RLCSKIAPKPTRPGEQP
Sbjct:  581 DTVLMAALRAGRHSAALLLLKALAVPTAAAHTFRYAWVIAAALRLSELCPCPSCVLGRTADERARLCSKIAPKPTRPGEQP 661
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BLAST of mRNA_Ecto-sp13_S_contig16526.4698.1 vs. uniprot
Match: D7G483_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G483_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 9.020e-40
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 3 
Query:    3 DTVLMAALRTGRHAAALLLLQALAVPTAAAHTFRYAWVIAAALRLAELCPCPSCVLGRTADERTRLCSKIAPKPTRPGEQ 242
            DTVLMAALR GRH+AALLLLQALAVPTAAAHTFRYAWVIAAALRLAELCPCPSCVLGRTADER RLCSKIAPKPTRPGEQ
Sbjct: 1575 DTVLMAALRAGRHSAALLLLQALAVPTAAAHTFRYAWVIAAALRLAELCPCPSCVLGRTADERARLCSKIAPKPTRPGEQ 1654
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16526.4698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLN4_9PHAE7.570e-4093.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G483_ECTSI9.020e-4096.25Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16526contigEcto-sp13_S_contig16526:875..1717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score140.6
Seed ortholog evalue3.1e-31
Seed eggNOG ortholog2880.D7G483
Model size245
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Cds size231
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462868.7829406-UTR-Ecto-sp13_S_contig16526:874..8881681462868.7829406-UTR-Ecto-sp13_S_contig16526:874..888Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16526 875..888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462868.7955775-CDS-Ecto-sp13_S_contig16526:888..10081681462868.7955775-CDS-Ecto-sp13_S_contig16526:888..1008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16526 889..1008 +
1681462868.8063197-CDS-Ecto-sp13_S_contig16526:1606..17171681462868.8063197-CDS-Ecto-sp13_S_contig16526:1606..1717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16526 1607..1717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16526.4698.1prot_Ecto-sp13_S_contig16526.4698.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16526 889..1717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16526.4698.1

>prot_Ecto-sp13_S_contig16526.4698.1 ID=prot_Ecto-sp13_S_contig16526.4698.1|Name=mRNA_Ecto-sp13_S_contig16526.4698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MAALRTGRHAAALLLLQALAVPTAAAHTFRYAWVIAAALRLAELCPCPSC
VLGRTADERTRLCSKIAPKPTRPGEQP
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mRNA from alignment at Ecto-sp13_S_contig16526:875..1717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16526.4698.1 ID=mRNA_Ecto-sp13_S_contig16526.4698.1|Name=mRNA_Ecto-sp13_S_contig16526.4698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16526:875..1717+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATACCGTCCTGATGGCCGCATTGAGGACGGGACGACACGCCGCCGCT
CTGCTACTGCTTCAGGCGCTCGCGGTGCCCACTGCGGCGGCTCACACTTT
CCGCTACGCCTGGGTTATCGCGGCCGCGCTAAGGGTGAGTCGTCGTTGTC
GTTGATGGTATTTTATTTGCTGCTGTTCTGTGGCAACCCTGCTATTAAGC
TACGCTACGCTACGTGGCCATATATGTACTGATCTACTCAATACGAGCGG
AGAATGCCCTCGGCTCCGATCGTCAAACCATTATGTTTCTAAGCCTTGAA
ATCAGCCAGGTATGGTACGGATGTGCGACAAACATGACAGGGGGAACTAG
AGCTCGTCGTAACTTGAGGCCCCGGCTCGCACCTTACATTGAGCCATTGG
CAAATGTGAAGGACCCCTCTAGATTCCGAATGGAAATACCAAAAAGTGCA
AGACAACAGCTACAGCTTTTCGGGACGTGTCGAAGAAACGAAAGCTGGAG
TATTTGGAGGAACCAAACACAATTGGCGGTGCCCATGCCCAGGAATGAAC
GGGCACTCGGAAAAATTTCCGGGCTTTCAGCCAATGGCATCTCAGCATTG
ACATAAGCAATGACATTTAAACTGCTGCAGGACGAATCAGAATCCCTTCT
CCCAGCCACTCCTTGATGCTACTCCTACGTCGTGCCGTTTCCCGTGTCTG
CCGCGTGCTTGGTTCCTTTTGATACACTGCAGTTGGCGGAGCTGTGCCCA
TGTCCCTCCTGTGTGCTAGGAAGGACGGCGGACGAGAGAACGCGACTGTG
CAGCAAGATCGCTCCTAAGCCAACACGGCCGGGAGAACAGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16526:875..1717+

>mRNA_Ecto-sp13_S_contig16526.4698.1 ID=mRNA_Ecto-sp13_S_contig16526.4698.1|Name=mRNA_Ecto-sp13_S_contig16526.4698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16526:875..1717+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGCATTGAGGACGGGACGACACGCCGCCGCTCTGCTACTGCTTCA
GGCGCTCGCGGTGCCCACTGCGGCGGCTCACACTTTCCGCTACGCCTGGG
TTATCGCGGCCGCGCTAAGGTTGGCGGAGCTGTGCCCATGTCCCTCCTGT
GTGCTAGGAAGGACGGCGGACGAGAGAACGCGACTGTGCAGCAAGATCGC
TCCTAAGCCAACACGGCCGGGAGAACAGCCC
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