mRNA_Ecto-sp13_S_contig16517.4694.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16517.4694.1
Unique NamemRNA_Ecto-sp13_S_contig16517.4694.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16517.4694.1 vs. uniprot
Match: D7FVY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY1_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.080e-59
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 1
Query:    1 GAYLKKTGEFTVRYVLENRLLDGDGTISKIRKVEVLDVDECTYTGRHAEFRHACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDVTPPTI 282
            GAYLKKTGEFTVRYVLENRLL+GDGTISKIRKVEVLDVDECTYTGRHAEFRHACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDVTPPTI
Sbjct:  293 GAYLKKTGEFTVRYVLENRLLEGDGTISKIRKVEVLDVDECTYTGRHAEFRHACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDVTPPTI 386          
BLAST of mRNA_Ecto-sp13_S_contig16517.4694.1 vs. uniprot
Match: L8GSC1_ACACA (Calcium binding egf domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSC1_ACACA)

HSP 1 Score: 68.6 bits (166), Expect = 1.890e-11
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   40 YVLENRLLDGDGTIS--KIRKVEVLDVDECTYTGRHAEFRHACSPEAECHNTDGGYECLCAEGYAGDGL 240
            Y +E +  D +G ++  + RKVEV D+DEC      A   HACS  AEC NT GGYEC+C EG+AGDG 
Sbjct:  208 YEIEYQATDKEGNVAEKRYRKVEVTDIDEC------ALGEHACSENAECINTIGGYECVCKEGFAGDGF 270          
BLAST of mRNA_Ecto-sp13_S_contig16517.4694.1 vs. uniprot
Match: Q8WPL1_OIKDI (Fibrillin-like protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=Q8WPL1_OIKDI)

HSP 1 Score: 58.2 bits (139), Expect = 8.810e-8
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1
Query:  154 HACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDV 267
            H C  EA C+N +GGYECLCA+G+ GDG+T G  C D+
Sbjct: 1609 HMCFNEATCNNFEGGYECLCADGFEGDGMTNGDNCTDI 1646          
BLAST of mRNA_Ecto-sp13_S_contig16517.4694.1 vs. uniprot
Match: A0A7M7PDJ2_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PDJ2_STRPU)

HSP 1 Score: 55.8 bits (133), Expect = 5.550e-7
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 1
Query:  109 DVDECTYTGRHAEFRHACSPEAECHNTDGGYECLCAEGYAGDGLTTGQ 252
            DVDECT        +  C P A+C NT+GGYEC C EGY GDG++  Q
Sbjct:  322 DVDECT------SGQDPCDPNAQCDNTEGGYECECNEGYVGDGISCNQ 363          
BLAST of mRNA_Ecto-sp13_S_contig16517.4694.1 vs. uniprot
Match: E4XDJ5_OIKDI (Oikosin 19 n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4XDJ5_OIKDI)

HSP 1 Score: 55.8 bits (133), Expect = 5.680e-7
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1
Query:  154 HACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDV 267
            H C  +A C+N +G YECLCA+G+ GDGLT G  C D+
Sbjct: 1050 HMCFSDATCNNFEGSYECLCADGFEGDGLTNGDNCTDI 1087          
BLAST of mRNA_Ecto-sp13_S_contig16517.4694.1 vs. uniprot
Match: A0A2N2JEN4_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 TaxID=2013741 RepID=A0A2N2JEN4_9DELT)

HSP 1 Score: 54.3 bits (129), Expect = 2.010e-6
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1
Query:   94 KVEVLDVDECTYTGRHAEFRHACSPEAECHNTDGGYECLCAEGYAGDG 237
            +V  +DVDEC      A     C P A CHNT+GGY+C+C  G+AGDG
Sbjct: 1841 RVFAIDVDEC------ASGEATCDPNATCHNTEGGYDCVCDAGFAGDG 1882          
BLAST of mRNA_Ecto-sp13_S_contig16517.4694.1 vs. uniprot
Match: UPI00077A80D6 (protein kinase C-binding protein NELL2-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A80D6)

HSP 1 Score: 50.8 bits (120), Expect = 8.760e-6
Identity = 22/45 (48.89%), Postives = 26/45 (57.78%), Query Frame = 1
Query:  109 DVDECTYTGRHAEFRHACSPEAECHNTDGGYECLCAEGYAGDGLT 243
            D+DEC       E  + C   A+CHNTDG Y C+C  GY GDG T
Sbjct:   91 DIDECK------EHSNICDVNADCHNTDGSYMCICKAGYTGDGRT 129          
BLAST of mRNA_Ecto-sp13_S_contig16517.4694.1 vs. uniprot
Match: UPI00106A238F (protein kinase C-binding protein NELL2-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A238F)

HSP 1 Score: 50.1 bits (118), Expect = 1.090e-5
Identity = 24/53 (45.28%), Postives = 30/53 (56.60%), Query Frame = 1
Query:  109 DVDECTYTGRHAEFRHACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDV 267
            D+DEC+      +  H C   A C+NT G Y+CLC  GY+GDG T    C DV
Sbjct:   22 DIDECSN-----KSSHDCDGNANCNNTPGSYQCLCINGYSGDGRT----CTDV 65          
BLAST of mRNA_Ecto-sp13_S_contig16517.4694.1 vs. uniprot
Match: A0A830B2C7_9LAMI (Wall-associated receptor kinase 2 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830B2C7_9LAMI)

HSP 1 Score: 52.0 bits (123), Expect = 1.250e-5
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1
Query:  109 DVDECTYTGRHAEFRHACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCV 261
            D+DEC  T  +      C  E +C NT GG++C+C EGY+GDG T G+GC+
Sbjct:  295 DIDECLNTSLNI-----C--EKKCVNTPGGFQCVCPEGYSGDGRTDGKGCI 338          
BLAST of mRNA_Ecto-sp13_S_contig16517.4694.1 vs. uniprot
Match: UPI001ED7DF29 (uromodulin-like 1 n=1 Tax=Scatophagus argus TaxID=75038 RepID=UPI001ED7DF29)

HSP 1 Score: 52.0 bits (123), Expect = 1.280e-5
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   79 ISKIRKVEVLDVDECTYTGRHAEFRHACSPEAECHNTDGGYECLCAEGYA 228
            I ++  V V DVDECT +  H      CSP+A+C+NT G Y+C C +GY+
Sbjct:  254 IQEVSSVTVEDVDECTQSALHQ-----CSPQADCNNTVGSYQCACHQGYS 298          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16517.4694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FVY1_ECTSI1.080e-5998.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
L8GSC1_ACACA1.890e-1150.72Calcium binding egf domain containing protein n=1 ... [more]
Q8WPL1_OIKDI8.810e-857.89Fibrillin-like protein n=1 Tax=Oikopleura dioica T... [more]
A0A7M7PDJ2_STRPU5.550e-752.08Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
E4XDJ5_OIKDI5.680e-755.26Oikosin 19 n=2 Tax=Oikopleura dioica TaxID=34765 R... [more]
A0A2N2JEN4_9DELT2.010e-650.00Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
UPI00077A80D68.760e-648.89protein kinase C-binding protein NELL2-like n=1 Ta... [more]
UPI00106A238F1.090e-545.28protein kinase C-binding protein NELL2-like n=1 Ta... [more]
A0A830B2C7_9LAMI1.250e-547.06Wall-associated receptor kinase 2 n=1 Tax=Phtheiro... [more]
UPI001ED7DF291.280e-546.00uromodulin-like 1 n=1 Tax=Scatophagus argus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16517contigEcto-sp13_S_contig16517:2666..3385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score200.7
Seed ortholog evalue3.1e-49
Seed eggNOG ortholog2880.D7FVY1
Model size282
KEGG koko:K05120
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG1217@1,KOG1217@2759
EC2.7.10.1
Cds size282
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko01020,ko04050
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462868.381933-CDS-Ecto-sp13_S_contig16517:2665..28001681462868.381933-CDS-Ecto-sp13_S_contig16517:2665..2800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16517 2666..2800 -
1681462868.3941672-CDS-Ecto-sp13_S_contig16517:3238..33851681462868.3941672-CDS-Ecto-sp13_S_contig16517:3238..3385Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16517 3239..3385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16517.4694.1prot_Ecto-sp13_S_contig16517.4694.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16517 2666..3385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16517.4694.1

>prot_Ecto-sp13_S_contig16517.4694.1 ID=prot_Ecto-sp13_S_contig16517.4694.1|Name=mRNA_Ecto-sp13_S_contig16517.4694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
GAYLKKTGEFTVRYVLENRLLDGDGTISKIRKVEVLDVDECTYTGRHAEF
RHACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDVTPPTI
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mRNA from alignment at Ecto-sp13_S_contig16517:2666..3385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16517.4694.1 ID=mRNA_Ecto-sp13_S_contig16517.4694.1|Name=mRNA_Ecto-sp13_S_contig16517.4694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16517:2666..3385- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCCTACCTGAAGAAGACGGGTGAGTTTACCGTGAGGTACGTTCTCGA GAACCGTCTGCTGGACGGGGACGGCACCATCTCCAAGATCAGGAAGGTGG AGGTGCTGGATGTGGACGAGTGTACCTACACCGGCCGCCACGCTGAGGTA AGACGGTGGGTTGATGCTGCTACTGCTGTGGTAGGTATCGGTGTTTAAAA AAATCCACCTGTTTAACGATAGTGCCACGTTGTTCTTATTATACGGATGT CTGGCCTGCCTCCAAACATCAAGGGTTCATGTCTGGAACGGGTGGTGTTT CTTTGATGTTGCGTACGAAAAGTCTGCTTTGCCAATATATATTAATAAAC GGAGAAAAAAACTTGGACCAATCGCACCAAGAGGATGTCACAAGGGCTCG GTTGGTGGGGGGACCAAACCCAACACCGAAGCGTCTGCTTGACTGGAGTG CTCGTTTTGTTATGACGGCACGTCAAACAGGAGACATATCTTTCGTTCCC ACTCCCATTCACAGCATTGTTGTCTTTTCTCGCCTCCTTTCCCCTGAGTC CCCCTCCCCCCTCCCTCCCGGTTGTGCACTCCCAGTTCCGACACGCCTGT TCCCCGGAGGCGGAGTGCCACAACACCGACGGCGGGTACGAGTGTCTCTG TGCGGAGGGCTACGCCGGGGACGGTCTAACCACCGGACAGGGGTGCGTCG ACGTCACCCCGCCTACCATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16517:2666..3385-

>mRNA_Ecto-sp13_S_contig16517.4694.1 ID=mRNA_Ecto-sp13_S_contig16517.4694.1|Name=mRNA_Ecto-sp13_S_contig16517.4694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16517:2666..3385- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCCTACCTGAAGAAGACGGGTGAGTTTACCGTGAGGTACGTTCTCGA
GAACCGTCTGCTGGACGGGGACGGCACCATCTCCAAGATCAGGAAGGTGG
AGGTGCTGGATGTGGACGAGTGTACCTACACCGGCCGCCACGCTGAGTTC
CGACACGCCTGTTCCCCGGAGGCGGAGTGCCACAACACCGACGGCGGGTA
CGAGTGTCTCTGTGCGGAGGGCTACGCCGGGGACGGTCTAACCACCGGAC
AGGGGTGCGTCGACGTCACCCCGCCTACCATC
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