mRNA_Ecto-sp13_S_contig16516.4693.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16516.4693.1 vs. uniprot
Match: A0A6H5K7L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7L9_9PHAE) HSP 1 Score: 405 bits (1042), Expect = 4.050e-136 Identity = 215/298 (72.15%), Postives = 231/298 (77.52%), Query Frame = 3
Query: 3 GKEADGT-ENGVVQSQPSNEECPDRDELWKDYENAKRV------VTGKK--VAGDADLDEELVAKYQVSEEANPYPNAPRGEWSTGLCGCFEHFPSCVTACLCTCITVGQVAEAARLFKGVFYAVVAAYLIDCVFGCGGILIMLCGTYAIAKARSRVARHYRIPINKCGNCCLSFWCGCCVVSQVARHLFAWDSTHYGRCQGWLECGPRPASHWEQVSCGKSDRNVGRNA--PSSCQQSQFRQNAAAALGPPPYXXXXXXXXXXXXXXXXXXDQMVRPXXXXXVKGHAPSAVAPMDRC 863
GK+ DGT E+GVVQSQP + ECP+ DEL KDYENAK V V G + + DA LD ELVA+Y +SEEA PYPNAPRGEW+TGLCGCFEHFPSCVTACLCTCITVGQVAEAARLFKGVFYAVVAAYLIDCVFG GGILIMLCGTYAIAK+RSRVARHY IPIN+CGNCCLSFWCGCCV+SQVARHLFAWDS +YGRCQGWLECGPRP S W QVS KS NVG + P S Q+ QF+QNA PP DQMV XXXXXVKGHAPSAVAPMDRC
Sbjct: 260 GKKTDGTTEDGVVQSQPPDIECPNPDELRKDYENAKMVRGLADYVPGGRFGMGDDAGLDPELVARYDISEEATPYPNAPRGEWTTGLCGCFEHFPSCVTACLCTCITVGQVAEAARLFKGVFYAVVAAYLIDCVFGFGGILIMLCGTYAIAKSRSRVARHYGIPINECGNCCLSFWCGCCVISQVARHLFAWDSKNYGRCQGWLECGPRPHSRWTQVSMSKSTCNVGGQSMVPPSHQEFQFQQNAITTAPVPP-----------------AYDQMVTXXXXXXVKGHAPSAVAPMDRC 540
BLAST of mRNA_Ecto-sp13_S_contig16516.4693.1 vs. uniprot
Match: A0A6H5KTZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTZ6_9PHAE) HSP 1 Score: 352 bits (903), Expect = 1.940e-119 Identity = 178/253 (70.36%), Postives = 189/253 (74.70%), Query Frame = 3
Query: 111 VVTGKKVAGDADLDEELVAKYQVSEEANPYPNAPRGEWSTGLCGCFEHFPSCVTACLCTCITVGQVAEAARLFKGVFYAVVAAYLIDCVFGCGGILIMLCGTYAIAKARSRVARHYRIPINKCGNCCLSFWCGCCVVSQVARHLFAWDSTHYGRCQGWLECGPRPASHWEQVSCGKSDRNVGRNAP--SSCQQSQFRQNAAAALGPPPYXXXXXXXXXXXXXXXXXXDQMVRPXXXXXVKGHAPSAVAPMDRC 863
V + A DA LD LVA+ +SEEA PYPNAPRGEW+TGLCGCFEHFPSCVTACLCTCITVGQVA+AARLFKGVFYAVVAAYLIDCVFG GGILIMLCGTYAIAK+RSRVARHY IPINK GNCCLS WCGCC VARHLFAWDS +YGRCQGWLECGPRP S W QVS GKS NVG +P S Q+ QF+QNA + PP DQMV P VKGHAPSAVAPMDRC
Sbjct: 6 VWSNSSCADDAGLDPALVARCDISEEATPYPNAPRGEWTTGLCGCFEHFPSCVTACLCTCITVGQVAQAARLFKGVFYAVVAAYLIDCVFGFGGILIMLCGTYAIAKSRSRVARHYGIPINKYGNCCLSLWCGCC----VARHLFAWDSKNYGRCQGWLECGPRPYSQWTQVSTGKSTCNVGGQSPVPPSHQEFQFQQNATTTVPVPP-----------------AYDQMVTPSYDQVVKGHAPSAVAPMDRC 237
BLAST of mRNA_Ecto-sp13_S_contig16516.4693.1 vs. uniprot
Match: A0A6H5JUX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX2_9PHAE) HSP 1 Score: 205 bits (521), Expect = 5.710e-63 Identity = 102/156 (65.38%), Postives = 108/156 (69.23%), Query Frame = 3
Query: 402 MLCGTYAIAKARSRVARHYRIPINKCGNCCLSFWCGCCVVSQVARHLFAWDSTHYGRCQGWLECGPRPASHWEQVSCGKSDRNVGRNA--PSSCQQSQFRQNAAAALGPPPYXXXXXXXXXXXXXXXXXXDQMVRPXXXXXVKGHAPSAVAPMDRC 863
MLCGTYAIAK+RSRVARHY IPINK GNCCLSFWCGCCVVSQVARHLFAWDS +YGRCQGWLECGPRP S W QVS GKS NVG + P S Q+ QF+QNA PP DQM+ P VKGHAPSAV PMDRC
Sbjct: 1 MLCGTYAIAKSRSRVARHYGIPINKYGNCCLSFWCGCCVVSQVARHLFAWDSKNYGRCQGWLECGPRPHSRWTQVSMGKSTSNVGGQSMVPPSHQEFQFQQNATTTAPVPP-----------------ARDQMMTPSYDQMVKGHAPSAVTPMDRC 139
BLAST of mRNA_Ecto-sp13_S_contig16516.4693.1 vs. uniprot
Match: A0A6G0WH07_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WH07_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.170e-16 Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 3
Query: 216 GEWSTGLCGCFEH-FPSCVTACLCTCITVGQVAEAARLFKGVFYAVVAAYLIDCVFGCGGILIMLCGTYAIAKARSRVARHYRIPINKCGNCCLSFWCGCCVVSQVARHLFAW 551
G+W L CF+ P+C+ +C C C+T+GQ+ L + + A+V+ L+ FG G+L++L Y K R+ + RIP + CG+CC SFWCGCCV++Q+A H A+
Sbjct: 31 GKWKADLFSCFDSVLPNCLCSCCCPCVTLGQIVARLGLGEFMITAIVSGVLMCTSFG--GLLVLLYVFYLRYKFRTML----RIPGSACGDCCASFWCGCCVLAQMATHADAY 137
BLAST of mRNA_Ecto-sp13_S_contig16516.4693.1 vs. uniprot
Match: A0A5N6RTI8_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6RTI8_9ROSI) HSP 1 Score: 77.8 bits (190), Expect = 2.280e-13 Identity = 44/128 (34.38%), Postives = 62/128 (48.44%), Query Frame = 3
Query: 189 ANPYPN----APRGEWSTGLCGCFEHFPSCVTACLCTCITVGQVAEAARLFK------GVFYAVVAAYLIDCVFGCGGILIMLCGTYAIAKARSRVARHYRIPINKCGNCCLSFWCGCCVVSQVARHL 542
A YPN P G+WS+GLC CF+ +C C C CIT G+VAE + G+ Y +A C++ C TY R+++ Y +P + CG+CC+ FWC C + Q R L
Sbjct: 52 AKMYPNNTDPQPEGQWSSGLCDCFQDSSNCCVTCCCPCITFGRVAEIVDRGQTTCACGGLIYYALAHLGCACLYTC---------TY-----RTKLRALYSLPEDPCGDCCVHFWCTTCALCQEYREL 165
BLAST of mRNA_Ecto-sp13_S_contig16516.4693.1 vs. uniprot
Match: UPI000CE1999B (protein PLANT CADMIUM RESISTANCE 2-like n=2 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1999B) HSP 1 Score: 74.7 bits (182), Expect = 1.400e-12 Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 3
Query: 198 YPNAPRGEWSTGLCGCFEHFPSCVTACLCTCITVGQVAEAARLFKGVFYAVVA-AYLIDCVFGCGGILIMLCGTYAIAKARSRVARHYRIPINKCGNCCLSFWCGCCVVSQVARHL 542
Y + P G+WSTG+CGCFE +C C CIT G+ AE + F+ +++ VFG G I C TY R+R+ Y +P CG+CC+ +C C + Q R L
Sbjct: 18 YTSPPEGQWSTGICGCFEDVTNCCVTLWCPCITFGRTAEIVDKGRISFFTAARNCFMLAYVFGIGA-CIYTC-TY-----RARLRALYSLPSEPCGDCCVHHFCFFCALCQEYREL 126
BLAST of mRNA_Ecto-sp13_S_contig16516.4693.1 vs. uniprot
Match: A0A2I4F149_JUGRE (cell number regulator 2-like n=2 Tax=Juglans TaxID=16718 RepID=A0A2I4F149_JUGRE) HSP 1 Score: 73.6 bits (179), Expect = 3.500e-12 Identity = 45/146 (30.82%), Postives = 67/146 (45.89%), Query Frame = 3
Query: 177 VSEEANPYPNAPR---GEWSTGLCGCFEHFPSCVTACLCTCITVGQVAE------AARLFKGVFYAVVAAYLIDCVFGCGGILIMLCGTYAIAKARSRVARHYRIPINKCGNCCLSFWCGCCVVSQVARHLFAWDSTHYGRCQGWL 587
S+ P P A R G+WSTGLC CF+ +C C C CIT G++AE + G+ YA +A C++ C TY R+++ Y + + C +CC+ FWC C + Q R L + + GW+
Sbjct: 11 ASQALPPQPYAARPHVGQWSTGLCDCFDDPSNCCVTCCCPCITFGRIAEIVDRGQTSCACAGLIYAALAYIGCACLYTC---------TY-----RTKLRAAYSLQEDPCADCCVHFWCTHCALCQEYREL---KNRGFDPAIGWM 139
BLAST of mRNA_Ecto-sp13_S_contig16516.4693.1 vs. uniprot
Match: A0A835EZK4_9POAL (Uncharacterized protein n=8 Tax=Paniceae TaxID=147428 RepID=A0A835EZK4_9POAL) HSP 1 Score: 72.4 bits (176), Expect = 5.280e-12 Identity = 39/123 (31.71%), Postives = 56/123 (45.53%), Query Frame = 3
Query: 216 GEWSTGLCGCFEHFPSCVTACLCTCITVGQVAEAARLFKGVFYAVVAAYLIDCVFGCGGILIMLCGTYAIAKARSRVARHYRIPINKCGNCCLSFWCGCCVVSQVARHLFAWDSTHYGRCQGW 584
GEWS GLC CFE +C C C C+T G+VAE + Y + GC + Y+ +K RS + Y + + C +CC+ FWC C + Q R L + + +GW
Sbjct: 3 GEWSVGLCSCFEDVSTCCLTCWCPCVTFGRVAEIVDRGSTSCFMNGTLYFLLLYIGCPWV-------YSCSK-RSSMRAQYNLQESPCLDCCVHFWCDTCALCQEYREL---EKRGFNMAKGW 114
BLAST of mRNA_Ecto-sp13_S_contig16516.4693.1 vs. uniprot
Match: A0A6A1VNX0_9ROSI (Protein PLANT CADMIUM RESISTANCE 3 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VNX0_9ROSI) HSP 1 Score: 72.0 bits (175), Expect = 1.380e-11 Identity = 39/118 (33.05%), Postives = 57/118 (48.31%), Query Frame = 3
Query: 195 PYPNAPRGEWSTGLCGCFEHFPSCVTACLCTCITVGQVAEAARLFKGVFYAVVAAYLIDCVFGCGGILIMLCGTYAIAKARSRVARHYRIPINKCGNCCLSFWCGCCVVSQVARHLFA 548
PY + G+WS+GLC CF +C C C+T G++AE + + Y+ GC + M TY RS++ Y +P + CG+CC+ FWC C + Q R L A
Sbjct: 21 PYASQAVGQWSSGLCDCFNDPSNCCLTWCCPCVTFGRIAEVTDRGQTSCFMAGLIYVALAYVGCQCLYSM---TY-----RSKLRGSYSLPEDPCGDCCVHFWCETCALCQEHRELKA 130
BLAST of mRNA_Ecto-sp13_S_contig16516.4693.1 vs. uniprot
Match: A0A6P5F5E0_ANACO (cell number regulator 10-like n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5F5E0_ANACO) HSP 1 Score: 72.0 bits (175), Expect = 1.410e-11 Identity = 48/138 (34.78%), Postives = 63/138 (45.65%), Query Frame = 3
Query: 147 LDEELVAKYQVSEEANPYPNAPRGEWSTGLCGCFEHFPSCVTACLCTCITVGQVAEAARL------FKGVFYAVVAAYLIDCVFGCGGILIMLCGTYAIAKARSRVARHYRIPINKCGNCCLSFWCGCCVVSQVARHL 542
+++E V V A P A GEWSTGLC CFE F +C C C CIT G++AE G YA LI + GC I + RS++ Y +P + C +CC+ F C C + Q R L
Sbjct: 8 VEDEPVTGTPVGVSAPPVQGAV-GEWSTGLCDCFEDFGNCCLTCWCPCITFGRIAEIVDRGSTSCGTSGALYA-----LIMSLTGCQWIYSCM--------YRSKLRAEYNLPESPCCDCCIHFCCEPCALCQQHREL 131 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16516.4693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16516.4693.1 >prot_Ecto-sp13_S_contig16516.4693.1 ID=prot_Ecto-sp13_S_contig16516.4693.1|Name=mRNA_Ecto-sp13_S_contig16516.4693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=266bp AGRRPTAQRTAWCSRSLQTRSAQTGTSCGKTTKTPKGLSPARRSPATRTWback to top mRNA from alignment at Ecto-sp13_S_contig16516:1971..3767+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16516.4693.1 ID=mRNA_Ecto-sp13_S_contig16516.4693.1|Name=mRNA_Ecto-sp13_S_contig16516.4693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1797bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16516:1971..3767+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16516:1971..3767+ >mRNA_Ecto-sp13_S_contig16516.4693.1 ID=mRNA_Ecto-sp13_S_contig16516.4693.1|Name=mRNA_Ecto-sp13_S_contig16516.4693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16516:1971..3767+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |