mRNA_Ecto-sp13_S_contig16513.4691.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16513.4691.1
Unique NamemRNA_Ecto-sp13_S_contig16513.4691.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16513.4691.1 vs. uniprot
Match: D7G5Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q5_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 1.170e-79
Identity = 139/199 (69.85%), Postives = 157/199 (78.89%), Query Frame = 1 
Query:    1 MASRTTPTNEEIDAVCRSPQAASRLNAGSQPFVPGQRWCPSTSNHGASESRGASVQAHFYVETIQTGRGTIRRYTTPSPTSENEANSAAKM-LAQSSTTVADSDEEDSMAILPVIVAEVPIAGIDDTLGVSDEADVAGLVQDRNDEEGDTA-VASSTESSS--PTDGDGGHTWKGIHVGVWLAIGTGVAVGAALWSRHR 585
            MASR TPT EEIDAV  S QAA  +N  +QPF+PGQRW PSTSN+G S SRGA  QA F+VET QTGRGTIRR+TTPS TS+NEANS AKM   QSST VA +DEEDS AI PVI AE+P+A  ++TLG  D A VAGL+++  DEEG+TA VASSTESSS  PT GDG H WKGIH+GVWLA+G GVAVGAALWSR R
Sbjct:    1 MASRATPTAEEIDAVYSSAQAAIGMNMQAQPFIPGQRWQPSTSNNGGSHSRGAGGQAQFHVETCQTGRGTIRRHTTPSLTSKNEANSVAKMPTTQSSTPVAGNDEEDSRAIEPVIAAEMPVASNENTLGGPDVAHVAGLIEESKDEEGETAAVASSTESSSSSPTGGDGRHKWKGIHIGVWLAVGAGVAVGAALWSRRR 199
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BLAST of mRNA_Ecto-sp13_S_contig16513.4691.1 vs. uniprot
Match: D7G5Q4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q4_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 2.200e-50
Identity = 97/131 (74.05%), Postives = 104/131 (79.39%), Query Frame = 1 
Query:  112 WCPSTSNHGASESRGASVQAHFYVETIQTGRGTIRRYTTPSPTSENEANSAAKMLAQSSTTVADSDEEDSMAILPVIVAEVPIAGIDDTLGVSDEADVAGLVQDRNDEEGDTAVASSTESSS-PTDGDGGH 501
            WCPSTSNHGAS+SRGAS QAHF+VE IQTGRGTIRRYTTPS TSENE N +AKM A SS  VAD DEEDS A  PV  AEVPIA  ++TL   D ADVAGL ++  DEEG TAVASSTESSS PT GDGGH
Sbjct:   11 WCPSTSNHGASQSRGASGQAHFHVEAIQTGRGTIRRYTTPSLTSENEINISAKMPAGSSMPVADIDEEDSRATDPVTAAEVPIASNENTLAGPDAADVAGLFEEAKDEEGKTAVASSTESSSSPTGGDGGH 141
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BLAST of mRNA_Ecto-sp13_S_contig16513.4691.1 vs. uniprot
Match: D7G5N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N7_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 9.790e-23
Identity = 57/90 (63.33%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:  307 DEEDSMAILPVIVAEVPIAGIDDTLGVSDEADVAGLVQDRNDEEGDTAVASSTESSSP--TDGDGGHTWKGIHVGVWLAIGTGVAVGAAL 570
            DEED  A  PV  AEV IA     +G  DEADVAGL+++  DEEG+TAVASSTE      T GDGG   KG+HVGVWLAIG GVAVGAAL
Sbjct:    5 DEEDPRASEPVTAAEVDIASDGSVVGGPDEADVAGLIEETKDEEGETAVASSTEXXXXXXTGGDGGRKRKGLHVGVWLAIGAGVAVGAAL 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16513.4691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5Q5_ECTSI1.170e-7969.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5Q4_ECTSI2.200e-5074.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5N7_ECTSI9.790e-2363.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16513contigEcto-sp13_S_contig16513:241..1791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size585
Hectar predicted targeting categoryother localisation
Exons3
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462868.195135-UTR-Ecto-sp13_S_contig16513:240..3021681462868.195135-UTR-Ecto-sp13_S_contig16513:240..302Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16513 241..302 -
1681462868.2458057-UTR-Ecto-sp13_S_contig16513:1658..17911681462868.2458057-UTR-Ecto-sp13_S_contig16513:1658..1791Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16513 1659..1791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462868.2077186-CDS-Ecto-sp13_S_contig16513:302..5791681462868.2077186-CDS-Ecto-sp13_S_contig16513:302..579Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16513 303..579 -
1681462868.2253199-CDS-Ecto-sp13_S_contig16513:1266..13761681462868.2253199-CDS-Ecto-sp13_S_contig16513:1266..1376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16513 1267..1376 -
1681462868.2362337-CDS-Ecto-sp13_S_contig16513:1655..16581681462868.2362337-CDS-Ecto-sp13_S_contig16513:1655..1658Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16513 1656..1658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16513.4691.1prot_Ecto-sp13_S_contig16513.4691.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16513 303..1658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16513.4691.1

>prot_Ecto-sp13_S_contig16513.4691.1 ID=prot_Ecto-sp13_S_contig16513.4691.1|Name=mRNA_Ecto-sp13_S_contig16513.4691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
MARPRAEERRSRPTSTSRRFRQDEVPSAGTQPLHRLQRTRPTVRPRCLLS
RALLWQTVTRRTLWLSYQSSWPRCRSQASTTRWGCQMRLMLRGWFRTGTT
RRAIQRWHHQRSLLRRPTATEDTRGRGFT*
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mRNA from alignment at Ecto-sp13_S_contig16513:241..1791-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16513.4691.1 ID=mRNA_Ecto-sp13_S_contig16513.4691.1|Name=mRNA_Ecto-sp13_S_contig16513.4691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1551bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16513:241..1791- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATCGAGGACGACACCCACGAACGAGGAAATAGACGCCGTGTGCAG
GTCTCCGCAAGCTGCGAGCAGGTTGAACGCGGGATCACAACCATTCGTCC
CGGGGCAACGGTGGTGTCCGTCTACGAGCAACCATGGTGAAAACGGATTT
TGAACTGCTATCAGTGTTACGATAGATTCGTGCATATGCATGATCGGCGA
AGAGAGAAGAGAGCGCGCACATTTACAGCAAGAATGTCCTGCGAGGGAAG
TACGCGTGGCACATGTTGGTGACGATCAAGATCAATACGCATCTCGTGAA
TGAATCTGCCCTCTCACTGTCACTTGGGTAGTATCGGCGGAATGTGTTGT
CCAATCTTCGTGCCAACGATCTGGCCGACTTTCACCCTCTCCAACCCTTC
TAATGGCGAGAACAGGCGCGTCCGAGAGCCGAGGAGCGTCGGTCCAGGCC
CACTTCTACGTCGAGACGATTCAGACAGGACGAGGTACCATCCGCCGGTA
CACAACCCCTTCACCGACTTCAGAGGTGCGTATGTCCACACTCAGATGGG
CTTGCGGCTGGATGGAAACCATACGTCATGTACACCCAACGGTCACATGA
AACTCATCGACACAACAACCAATCTACGCTGTGACCCGATGATTGAGTCC
GAACTCGTGCTTGGAAGCATGTACGCAGCAGTTCGATGCGGCCCATGTAT
CATGCCACTCATGTCAAAATGGACCATCGGGTCATCCAGCCTTGCCGAGT
TGAGCTGTTCGCTATCCAGCGAAACTGACTTCGATATTGATGCAGACAGC
CATAGGGCACATTCCAGTGTTCAGCCTAGTGACTTGATTATTCATCGTCA
CTATTGCGCATTCCTCTCGTTGCAGCAGATCACACGTCTTTTCACCGCCA
AAACACGTCTTTCGAGAAGTCACAACAATCCATTATGTGTAAAAACCAAG
GCCTCCAACAAGCAATCGAATCAACCCCCTACCAGATATCATGTCAACGA
TTTCAATGACAAGGAAGAATGGTCGAAGAACGAGTGTACATACAAAAGCT
GGCACATCGACCAACATCGGCAAATCAAAACATACTTTGCAGTCGGTGCG
TCCGGCTGTTCATTCTATACCTGGCCATTTCATTGCATGGCTGAACCCTT
CTCCCCGTTCCAACTTCCCCATCGTCCGGATGTCACCATGGACGGATGCG
CATGTATCGCAGAACGAGGCCAACAGTGCGGCCAAGATGCTTGCTCAGTC
GAGCACTACTGTGGCAGACAGTGACGAGGAGGACTCTATGGCTATCCTAC
CAGTCATCGTGGCCGAGGTGCCGATCGCAGGCATCGACGACACGCTGGGG
GTGTCAGATGAGGCTGATGTTGCGGGGTTGGTTCAGGACAGGAACGACGA
GGAGGGCGATACAGCGGTGGCATCATCAACGGAGTCTTCTTCGCCGACCG
ACGGCGACGGAGGACACACGTGGAAGGGGATTCACGTAGGGGTCTGGCTG
GCCATCGGTACCGGCGTTGCTGTCGGGGCTGCTCTGTGGTCGCGACACCG
C
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16513:241..1791-

>mRNA_Ecto-sp13_S_contig16513.4691.1 ID=mRNA_Ecto-sp13_S_contig16513.4691.1|Name=mRNA_Ecto-sp13_S_contig16513.4691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16513:241..1791- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCGTCCGAGAGCCGAGGAGCGTCGGTCCAGGCCCACTTCTACGTC
GAGACGATTCAGACAGGACGAGGTACCATCCGCCGGTACACAACCCCTTC
ACCGACTTCAGAGAACGAGGCCAACAGTGCGGCCAAGATGCTTGCTCAGT
CGAGCACTACTGTGGCAGACAGTGACGAGGAGGACTCTATGGCTATCCTA
CCAGTCATCGTGGCCGAGGTGCCGATCGCAGGCATCGACGACACGCTGGG
GGTGTCAGATGAGGCTGATGTTGCGGGGTTGGTTCAGGACAGGAACGACG
AGGAGGGCGATACAGCGGTGGCATCATCAACGGAGTCTTCTTCGCCGACC
GACGGCGACGGAGGACACACGTGGAAGGGGATTCACGTAG
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