mRNA_Ecto-sp13_S_contig16503.4687.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16503.4687.1
Unique NamemRNA_Ecto-sp13_S_contig16503.4687.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16503.4687.1 vs. uniprot
Match: D7FZV5_ECTSI (WSC domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV5_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 2.700e-41
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = -3 
Query:   74 SSPRSTPTHLPAECRQQERSKSSTDSPTPTRCAELLGEEHAESAFVPEDTYPEDGERESHNAGRRRWLSHGTGEQRSAHSNDDA 325
            S+PRSTPTHLPAECRQQ RSKSS +SPTPTRCAELLGEEHAE+AFVPEDTYPEDGERE+H AGRRRWLSHGTGEQRSAHSNDDA
Sbjct:   87 STPRSTPTHLPAECRQQGRSKSSAESPTPTRCAELLGEEHAENAFVPEDTYPEDGERENHTAGRRRWLSHGTGEQRSAHSNDDA 170
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BLAST of mRNA_Ecto-sp13_S_contig16503.4687.1 vs. uniprot
Match: A0A6H5L3W1_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W1_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.550e-39
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = -3 
Query:   68 SSPRSTPTHLPAECRQQERSKSSTDSPTPTRCAELLGEEHAESAFVPEDTYPEDGERESHNAGRRRWLSHGTGEQRSAHSNDDAGY 325
            S+ RSTPTHLPAECRQQ RSKSST+SPTPTRCAELLGEEHAE+A VPEDTYPEDGERE+HN  +RRWLSHGTGEQRSAHSNDDA Y
Sbjct:   87 STSRSTPTHLPAECRQQGRSKSSTNSPTPTRCAELLGEEHAENALVPEDTYPEDGERENHNTRKRRWLSHGTGEQRSAHSNDDAAY 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16503.4687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZV5_ECTSI2.700e-4191.67WSC domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5L3W1_9PHAE1.550e-3987.21WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16503contigEcto-sp13_S_contig16503:1087..1416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size330
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462867.9151738-CDS-Ecto-sp13_S_contig16503:1086..13921681462867.9151738-CDS-Ecto-sp13_S_contig16503:1086..1392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16503 1087..1392 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462867.9250047-UTR-Ecto-sp13_S_contig16503:1392..14161681462867.9250047-UTR-Ecto-sp13_S_contig16503:1392..1416Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16503 1393..1416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16503.4687.1prot_Ecto-sp13_S_contig16503.4687.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16503 1087..1392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16503.4687.1

>prot_Ecto-sp13_S_contig16503.4687.1 ID=prot_Ecto-sp13_S_contig16503.4687.1|Name=mRNA_Ecto-sp13_S_contig16503.4687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
HLLGLDLPPPRHHRPRYHFHRHRTQHRRSSAHSSARPCHGKATSFSLRYG
FLAPRLQDKCLRVQTHSRRVLLPVARRIELGWANLLKICFALAAGIPQVD
V*
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mRNA from alignment at Ecto-sp13_S_contig16503:1087..1416+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16503.4687.1 ID=mRNA_Ecto-sp13_S_contig16503.4687.1|Name=mRNA_Ecto-sp13_S_contig16503.4687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16503:1087..1416+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATCTTCTTGGTCTCGATCTTCCTCCTCCGCGTCATCATCGCCCTCGTTA
TCATTTCCACCGTCATCGTACCCAGCATCGTCGTTCGAGTGCGCACTCCT
CTGCTCGCCCGTGCCATGGGAAAGCCACCTCCTTCTCCCTGCGTTATGGC
TTTCTCGCTCCCCGTCTTCAGGATAAGTGTCTTCGGGTACAAACGCACTC
TCGGCGTGTTCTTCTCCCAGTAGCTCGGCGCATCGAGTTGGGGTGGGCGA
ATCTGTTGAAGATTTGCTTCGCTCTTGCTGCCGGCATTCCGCAGGTAGAT
GTGTAGGGGTGCTTCGCGGGGAAGAACCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16503:1087..1416+

>mRNA_Ecto-sp13_S_contig16503.4687.1 ID=mRNA_Ecto-sp13_S_contig16503.4687.1|Name=mRNA_Ecto-sp13_S_contig16503.4687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16503:1087..1416+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATCTTCTTGGTCTCGATCTTCCTCCTCCGCGTCATCATCGCCCTCGTTA
TCATTTCCACCGTCATCGTACCCAGCATCGTCGTTCGAGTGCGCACTCCT
CTGCTCGCCCGTGCCATGGGAAAGCCACCTCCTTCTCCCTGCGTTATGGC
TTTCTCGCTCCCCGTCTTCAGGATAAGTGTCTTCGGGTACAAACGCACTC
TCGGCGTGTTCTTCTCCCAGTAGCTCGGCGCATCGAGTTGGGGTGGGCGA
ATCTGTTGAAGATTTGCTTCGCTCTTGCTGCCGGCATTCCGCAGGTAGAT
GTGTAG
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