mRNA_Ecto-sp13_S_contig16500.4686.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16500.4686.1
Unique NamemRNA_Ecto-sp13_S_contig16500.4686.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16500.4686.1 vs. uniprot
Match: D8LCL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL3_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 5.050e-112
Identity = 166/187 (88.77%), Postives = 176/187 (94.12%), Query Frame = 1 
Query:    1 SDYPTWTRIACYIADMEAMGYDASVCVAAVVDEGVMACVDEPNEGPTFEQVSCPPTSLALTTSSECSFDGSLREAGEIFASMGTPADFDHVIHRLTRRVKGDDDGGGDTFPADGGRAVDTPAPSPGEDFDDASDDSEDIPTWWILVGSIVGAGFVGCCCKYGCGASCQIFDNECXXXXXXXSITCGR 561
            SDYPTWTR+ACYIA MEAMGYDASVCVAAVVD+GVMACVDEP EGPTFEQ+SCPPTSL LTTSS+C FDGSLREA E+FAS+GTPADFDHVIHRLTRRV+ DDDGGGDTFPADGGR VDTPAP+  ED DDA DDSEDIPTWWI+VGSI+GAGFVGCCCKYGCGASCQIFDNECXXXXXXXSITCGR
Sbjct:  128 SDYPTWTRVACYIAGMEAMGYDASVCVAAVVDDGVMACVDEPYEGPTFEQLSCPPTSLVLTTSSDCLFDGSLREAEEMFASIGTPADFDHVIHRLTRRVQ-DDDGGGDTFPADGGRTVDTPAPTSREDTDDAGDDSEDIPTWWIVVGSILGAGFVGCCCKYGCGASCQIFDNECXXXXXXXSITCGR 313
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BLAST of mRNA_Ecto-sp13_S_contig16500.4686.1 vs. uniprot
Match: A0A6H5JYT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT2_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 1.220e-84
Identity = 134/173 (77.46%), Postives = 141/173 (81.50%), Query Frame = 1 
Query:    1 SDYPTWTRIACYIADMEAMGYDASVCVAAVVDEGVMACVDEPNEGPTFEQVSCPPTSLALTTSSECSFDGSLREAGEIFASMGTPADFDHVIHRLTRRVKGDDD--GGGDTFPADGGRAVDTPAPSPGEDFDDASDDSEDIPTWWI--------LVGSIVGAGFVGCCCKYGC 489
            SDYPTWTRI CYIADMEAMGYDASVCVAAVVD+GVMACVDEP EGPTFEQVSCPP+SLALTTSSEC FDGSLREAGE+FAS+GTPADFDHVIHRLTR+V+ DDD  GGGDTFP+DGGRAVDTPAP PGED DDA D SED   W I        LV    G G   CCCK  C
Sbjct:  128 SDYPTWTRITCYIADMEAMGYDASVCVAAVVDDGVMACVDEPYEGPTFEQVSCPPSSLALTTSSECLFDGSLREAGEMFASIGTPADFDHVIHRLTRQVRDDDDHGGGGDTFPSDGGRAVDTPAPRPGEDADDAGDGSEDFSAWRIILLVIGIPLVVFFSGVGVRACCCKNDC 300
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BLAST of mRNA_Ecto-sp13_S_contig16500.4686.1 vs. uniprot
Match: D8LCT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT0_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.400e-39
Identity = 71/92 (77.17%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 SDYPTWTRIACYIADMEAMGYDASVCVAAVVDEGVMACVDEPNEGPTFEQVSCPPTSLALTTSSECSFDGSLREAGEIFASMGTPADFDHVI 276
            SDYPTWTRIACYIADMEA+G+DASVCVAAVVD+GVMACVDE  E PTFEQ SCP T L L TSS C FDGSLREA E+FA++GT A+ D VI
Sbjct:   98 SDYPTWTRIACYIADMEAIGFDASVCVAAVVDDGVMACVDEAYEIPTFEQFSCPSTYLTLATSSNCEFDGSLREAEEMFATIGTSAESDDVI 189
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BLAST of mRNA_Ecto-sp13_S_contig16500.4686.1 vs. uniprot
Match: D7FX08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX08_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.940e-32
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 1 
Query:    1 SDYPTWTRIACYIADMEAMGYDASVCVAAVVDEGVMACVDEPNEGPTFEQVSCPPTSLALTTSSECSFDGSLREAGEIFA-SMGT 252
            S+YPTWTRIACYIAD+EA+G+DASVCVAAVVD+G MACVDEP E P  EQ+SCP     LTTSS C  DG+LREAGE+F  ++GT
Sbjct:   79 SEYPTWTRIACYIADVEAVGFDASVCVAAVVDDGAMACVDEPYETPALEQLSCPSAGFTLTTSSNCDLDGTLREAGEMFGETIGT 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16500.4686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LCL3_ECTSI5.050e-11288.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYT2_9PHAE1.220e-8477.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCT0_ECTSI1.400e-3977.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FX08_ECTSI1.940e-3270.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16500contigEcto-sp13_S_contig16500:2..1472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size564
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_002450.1
Cds size564
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462867.8791175-CDS-Ecto-sp13_S_contig16500:1..3441681462867.8791175-CDS-Ecto-sp13_S_contig16500:1..344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16500 2..344 +
1681462867.8889666-CDS-Ecto-sp13_S_contig16500:1251..14721681462867.8889666-CDS-Ecto-sp13_S_contig16500:1251..1472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16500 1252..1472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16500.4686.1prot_Ecto-sp13_S_contig16500.4686.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16500 2..1472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16500.4686.1

>prot_Ecto-sp13_S_contig16500.4686.1 ID=prot_Ecto-sp13_S_contig16500.4686.1|Name=mRNA_Ecto-sp13_S_contig16500.4686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp
SDYPTWTRIACYIADMEAMGYDASVCVAAVVDEGVMACVDEPNEGPTFEQ
VSCPPTSLALTTSSECSFDGSLREAGEIFASMGTPADFDHVIHRLTRRVK
GDDDGGGDTFPADGGRAVDTPAPSPGEDFDDASDDSEDIPTWWILVGSIV
GAGFVGCCCKYGCGASCQIFDNECCCCCNNNSITCGR*
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mRNA from alignment at Ecto-sp13_S_contig16500:2..1472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16500.4686.1 ID=mRNA_Ecto-sp13_S_contig16500.4686.1|Name=mRNA_Ecto-sp13_S_contig16500.4686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16500:2..1472+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGACTACCCCACGTGGACTAGAATTGCCTGCTACATTGCGGACATGGA
AGCCATGGGATATGATGCAAGCGTTTGCGTCGCTGCGGTGGTCGACGAAG
GCGTCATGGCCTGCGTGGATGAACCAAACGAAGGACCTACGTTCGAGCAA
GTAAGCTGCCCCCCTACTTCACTCGCCCTCACTACGTCTAGTGAGTGCTC
GTTCGACGGATCCTTGAGGGAGGCAGGAGAAATATTCGCAAGTATGGGGA
CCCCGGCGGATTTCGACCACGTCATCCATCGCCTAACTCGACGAGTTAAA
GGCGACGACGACGGCGGCGGCGACACATTCCCCGCAGATGGTGGTGAGTA
GTGCATGCGTGGAGATCCAGTGATGGTAGCGAAACGTTACGGGGTGTTGC
AACGAGGCGGTACTGTAATCAGTCGGCCTTTCATGACGCCCACGACCTGT
TTCCTTTCTCATAACACCAACGAAGAAGACAGTGGCTGAGTTGCCTGGAA
TGTCATCGTTCCCGTTTACGGGGAAACCTTGCAGTAGATGATACCAGGTT
TTTGTCTCATTCTGTGCCACCAAGCGTTTAACAACCATTGGCGCGGAACC
TCCCCTCGAATGCTGATTGAGTAAATGGTTTGTAAGAGGAACGGATCAGA
AAATGTGCAGAACAAGTGTTGCAGCGGTAGTACTTTGTTCGACTGTATTG
CAAGCGAAAATGCTGAAACCACGCGAGATTCCTCTGCAGCATCTTTGCCA
ATGCCTTGCGATGCATGGCGACCTGATTCTCGAGCACGTTTCGGGCTTCC
AATTTCCATGTGTCTTCTCTCATTCGTCCGAGGTGAAAACATAGTTCGAA
GAGAGAGTGGGCCACGTAGTGCACAATTACCGGCAGAGTTGTGAACTACG
AATGTTTTCGACACAGCTGTACAGACTATCTGCTTCGCAGACGACACCTA
GCATCTTCAACAAATCGTTCTGCATTTTCGGATAGGGTTCAATGTTCTCC
AAGTGAAGCGGGACAAACTCTCCGCTGAACTGGCTATCCTGAACACGTAT
GTGCCCCGATGTCCTGAAGCGGCCCGGATGGTGCGGTTTGATTCGTTGTG
AGCTGTGGGAGTGGGGAGTGAGCTGCATGTCCTCCTAGCCAGCTGGACGT
AATTTTGATCTCAATTCTTGTACGCTCACGAACTCAAGATTACGTGCGGT
TGAGTCTGATGAACGATTTCTCCGTGTAACCGAACGTGGTCGTTCTGCAG
GTCGTGCGGTGGACACGCCAGCCCCATCACCTGGGGAAGATTTTGATGAC
GCCAGCGATGACAGTGAAGATATTCCGACATGGTGGATACTCGTTGGGTC
TATTGTTGGGGCTGGGTTTGTCGGGTGTTGTTGCAAGTATGGCTGTGGCG
CCAGTTGTCAGATCTTCGACAACGAATGTTGCTGTTGCTGCAACAACAAC
AGCATCACCTGCGGTAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16500:2..1472+

>mRNA_Ecto-sp13_S_contig16500.4686.1 ID=mRNA_Ecto-sp13_S_contig16500.4686.1|Name=mRNA_Ecto-sp13_S_contig16500.4686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16500:2..1472+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGACTACCCCACGTGGACTAGAATTGCCTGCTACATTGCGGACATGGA
AGCCATGGGATATGATGCAAGCGTTTGCGTCGCTGCGGTGGTCGACGAAG
GCGTCATGGCCTGCGTGGATGAACCAAACGAAGGACCTACGTTCGAGCAA
GTAAGCTGCCCCCCTACTTCACTCGCCCTCACTACGTCTAGTGAGTGCTC
GTTCGACGGATCCTTGAGGGAGGCAGGAGAAATATTCGCAAGTATGGGGA
CCCCGGCGGATTTCGACCACGTCATCCATCGCCTAACTCGACGAGTTAAA
GGCGACGACGACGGCGGCGGCGACACATTCCCCGCAGATGGTGGTCGTGC
GGTGGACACGCCAGCCCCATCACCTGGGGAAGATTTTGATGACGCCAGCG
ATGACAGTGAAGATATTCCGACATGGTGGATACTCGTTGGGTCTATTGTT
GGGGCTGGGTTTGTCGGGTGTTGTTGCAAGTATGGCTGTGGCGCCAGTTG
TCAGATCTTCGACAACGAATGTTGCTGTTGCTGCAACAACAACAGCATCA
CCTGCGGTAGATGA
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