prot_Ecto-sp13_S_contig165.4682.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig165.4682.1
Unique Name	prot_Ecto-sp13_S_contig165.4682.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	421

Homology

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BLAST of mRNA_Ecto-sp13_S_contig165.4682.1 vs. uniprot
Match: D7FX09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX09_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 3.790e-26
Identity = 77/236 (32.63%), Postives = 118/236 (50.00%), Query Frame = 0

Query:    2 ATDGVVKWIFSEFIPFGDIVSDLALIATLPSTDDAD---GGSSYHFMSWALWLGTFISTIPEMAIIVGVLTGIAVGAILGPATHSAHGEGREVLLSTYDQTIT-------------LVRYVFSDSKVITRFLLYFIEDVPPGWNNAVALAARFVFVTLFPVAYPLVKLWTWVSGNNDDAGRPWYSVLILLQVVGGLMTEVSSIYFAVSTKNGLSVASALFGMYSLVVSTLISRLKG 221
            AT+   +W   EF+PFGD+VSD+ L +TLP     D      +Y  M   L +GT +  IP++AI++G+L G+ V  +         G+ R V+  T  +                L RYVFSD K IT FL+  +      W+N + L A    V        + +       N+   G   Y  +IL+Q++ G +TE SSI+FAV     +S+ SA FG+YSLV++T+++  +G
Sbjct:    5 ATEPFAEWFTGEFLPFGDLVSDVWLWSTLPREKPEDYSCSAETYTVMRALLMVGTVVDAIPDVAILLGLLAGLVVAVV---------GKARAVITPTEQRRTPPISVRNVVKNVPGLARYVFSDGKSITNFLINRVGHKETTWDNTMELVAWHTLVFCHAPFLSVQRRCFRYQVNSQFNG---YLTIILVQLIAGGLTEASSIFFAVMGGGTVSIVSAWFGLYSLVMTTMLAVYRG 228

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig165.4682.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig165.4682.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FX09_ECTSI	3.790e-26	32.63	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 350..360
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 152..170
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 198..216
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 385..420
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 252..274
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 275..297
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 361..384
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 193..197
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..46
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 131..151
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 319..329
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 47..77
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 330..349
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 171..192
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 217..251
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 78..130
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 298..318
None	No IPR available	TMHMM	TMhelix		coord: 330..352
None	No IPR available	TMHMM	TMhelix		coord: 298..320
None	No IPR available	TMHMM	TMhelix		coord: 252..274
None	No IPR available	TMHMM	TMhelix		coord: 9..31
None	No IPR available	TMHMM	TMhelix		coord: 359..381
None	No IPR available	TMHMM	TMhelix		coord: 197..216
None	No IPR available	TMHMM	TMhelix		coord: 46..68
None	No IPR available	TMHMM	TMhelix		coord: 168..190
None	No IPR available	TMHMM	TMhelix		coord: 136..158

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig165	contig	Ecto-sp13_S_contig165:5587..17355 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig165.4682.1	mRNA_Ecto-sp13_S_contig165.4682.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig165 4125..19613 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig165.4682.1 ID=prot_Ecto-sp13_S_contig165.4682.1|Name=mRNA_Ecto-sp13_S_contig165.4682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=421bp
MATDGVVKWIFSEFIPFGDIVSDLALIATLPSTDDADGGSSYHFMSWALW
LGTFISTIPEMAIIVGVLTGIAVGAILGPATHSAHGEGREVLLSTYDQTI
TLVRYVFSDSKVITRFLLYFIEDVPPGWNNAVALAARFVFVTLFPVAYPL
VKLWTWVSGNNDDAGRPWYSVLILLQVVGGLMTEVSSIYFAVSTKNGLSV
ASALFGMYSLVVSTLISRLKGPKNADEEESFAQRSQKLAATSGQQIMKYG
PVGFAVVVGLGFLIMPFLGVYLILECKGSNMYHPQFDDCEDTSQDGEILA
SIGFVVLALFWLFSFYCAYSHDDGVITPEFAMVFFSGLGILVLGLGIVYG
CYEGEDSPGYVIAIVFFGCLISFVVVPAIWYQFFGKYKRADDDRHDRAAD
RGSTSVVRGSRPAFDPSRAQ*