prot_Ecto-sp13_S_contig165.4681.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig165.4681.1
Unique Nameprot_Ecto-sp13_S_contig165.4681.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length242
Homology
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BLAST of mRNA_Ecto-sp13_S_contig165.4681.1 vs. uniprot
Match: A0A6H5K4V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V7_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.550e-29
Identity = 83/208 (39.90%), Postives = 120/208 (57.69%), Query Frame = 0 
Query:   11 EDMFAKTYGEKVVHDSSRTLVNCAGHLILWLLISSCVTLALARHGVPMVVNSTQRRVARVVTYIESVGESVAEXXXXXASGRGEKGKXXXXXXXXASKSSNQVWHEDFSNFLAGYFQHDFGLSVFVSCLGESKVDIVRRSYGGPFTKGMKRRR----LKVELQKGEALVMGSGLRHRGSSFTKRNVPLFLAFLVGKSEGASFETTHNV 214
            E MF K   + V HD SR + NCA   +++ LI+  V LAL +HG+  +V    R  A+VVTYI S  ++                         A+K  +Q +HEDF+++LAG+F+ DFG+SV V C+  S V I+ +SYGG   +  ++ +    L+V L++GEALVMG GL HRG+ +  RN  LF+AF+ G+S  ASF  T+NV
Sbjct:  660 EAMFTKVVNDVVYHDLSRQMFNCALDWVMYFLIAVPVALALVKHGLLNMVGGGLRA-AKVVTYILSPAKA-----------------------GDATKR-HQAFHEDFAHYLAGFFKTDFGISVLVGCVEGSIVHIIPKSYGGKDEEVERKIKAGEFLEVHLKRGEALVMGPGLVHRGTGYNVRNSRLFVAFMGGRSSVASFLNTYNV 842
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig165.4681.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4V7_9PHAE2.550e-2939.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 57..241
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..36
NoneNo IPR availableTMHMMTMhelixcoord: 30..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig165contigEcto-sp13_S_contig165:1942..2667 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig165.4681.1mRNA_Ecto-sp13_S_contig165.4681.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig165 1904..3367 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig165.4681.1 ID=prot_Ecto-sp13_S_contig165.4681.1|Name=mRNA_Ecto-sp13_S_contig165.4681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
MLRKSSKCTKEDMFAKTYGEKVVHDSSRTLVNCAGHLILWLLISSCVTLA
LARHGVPMVVNSTQRRVARVVTYIESVGESVAESAEESASGRGEKGKSKK
GKNEKASKSSNQVWHEDFSNFLAGYFQHDFGLSVFVSCLGESKVDIVRRS
YGGPFTKGMKRRRLKVELQKGEALVMGSGLRHRGSSFTKRNVPLFLAFLV
GKSEGASFETTHNVQGERKMRGGKRVVQKAGFWKGERARRC*
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