mRNA_Ecto-sp13_S_contig165.4681.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig165.4681.1
Unique NamemRNA_Ecto-sp13_S_contig165.4681.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig165.4681.1 vs. uniprot
Match: A0A6H5K4V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V7_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 4.210e-29
Identity = 89/244 (36.48%), Postives = 129/244 (52.87%), Query Frame = 3 
Query:  399 QGLSVLQERELCSREGDPGVCLRFVEMLRKSSKCTKEDMFAKTYGEKVVHDSSRTLVNCAGHLILWLLISSCVTLALARHGVPMVVNSTQRRVARVVTYIESVGESVAEXXXXXASGRGEKGKXXXXXXXXASKSSNQVWHEDFSNFLAGYFQHDFGLSVFVSCLGESKVDIVRRSYGGPFTKGMKRRR----LKVELQKGEALVMGSGLRHRGSSFTKRNVPLFLAFLVGKSEGASFETTHNV 1118
            Q +    E     +   P   L  +E   K      E MF K   + V HD SR + NCA   +++ LI+  V LAL +HG+  +V    R  A+VVTYI S  ++                         A+K  +Q +HEDF+++LAG+F+ DFG+SV V C+  S V I+ +SYGG   +  ++ +    L+V L++GEALVMG GL HRG+ +  RN  LF+AF+ G+S  ASF  T+NV
Sbjct:  624 QSMQFADENYTVVKGAVPVYILDLIEKYMKRRGFKNEAMFTKVVNDVVYHDLSRQMFNCALDWVMYFLIAVPVALALVKHGLLNMVGGGLRA-AKVVTYILSPAKA-----------------------GDATKR-HQAFHEDFAHYLAGFFKTDFGISVLVGCVEGSIVHIIPKSYGGKDEEVERKIKAGEFLEVHLKRGEALVMGPGLVHRGTGYNVRNSRLFVAFMGGRSSVASFLNTYNV 842
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig165.4681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4V7_9PHAE4.210e-2936.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig165contigEcto-sp13_S_contig165:1904..3367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1240
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_004930.2
Cds size726
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462867.672065-UTR-Ecto-sp13_S_contig165:1903..19411681462867.672065-UTR-Ecto-sp13_S_contig165:1903..1941Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig165 1904..1941 -
1681462867.7051997-UTR-Ecto-sp13_S_contig165:2667..28101681462867.7051997-UTR-Ecto-sp13_S_contig165:2667..2810Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig165 2668..2810 -
1681462867.7154732-UTR-Ecto-sp13_S_contig165:3034..33671681462867.7154732-UTR-Ecto-sp13_S_contig165:3034..3367Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig165 3035..3367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462867.6918476-CDS-Ecto-sp13_S_contig165:1941..26671681462867.6918476-CDS-Ecto-sp13_S_contig165:1941..2667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig165 1942..2667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig165.4681.1prot_Ecto-sp13_S_contig165.4681.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig165 1942..2667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig165.4681.1

>prot_Ecto-sp13_S_contig165.4681.1 ID=prot_Ecto-sp13_S_contig165.4681.1|Name=mRNA_Ecto-sp13_S_contig165.4681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
MLRKSSKCTKEDMFAKTYGEKVVHDSSRTLVNCAGHLILWLLISSCVTLA
LARHGVPMVVNSTQRRVARVVTYIESVGESVAESAEESASGRGEKGKSKK
GKNEKASKSSNQVWHEDFSNFLAGYFQHDFGLSVFVSCLGESKVDIVRRS
YGGPFTKGMKRRRLKVELQKGEALVMGSGLRHRGSSFTKRNVPLFLAFLV
GKSEGASFETTHNVQGERKMRGGKRVVQKAGFWKGERARRC*
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mRNA from alignment at Ecto-sp13_S_contig165:1904..3367-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig165.4681.1 ID=mRNA_Ecto-sp13_S_contig165.4681.1|Name=mRNA_Ecto-sp13_S_contig165.4681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1464bp|location=Sequence derived from alignment at Ecto-sp13_S_contig165:1904..3367- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGAGAGCGGTGGCCATGAAGACGCGGGTGGTGGCGGCGGTGACGGGGA
CACCAGTGGGGAGACTACAGACAACCACGACAGGGAAGATTACATCGGTG
TTAGAATATGACTTCTCCAACGCAAGAATCACAAGACGGAGCTTTCGGAT
CGTCGTCGCGGGTGGAATCCCACGGACCTCAGGGGTAGTGGTGATGAGAA
AGAGGTCAGGGCCAGTCTGGTGTACGCCATCGTGGCCGTGTTCTACCACA
TCGTCGACGCGATCTTCAGATTTCAGTCGGCGCACGAGACCAACTCATCG
ATCGTGACGGAAGTGCACCAGTGCGACAGAGTGGTAAGCCTCGTGTGCGT
GGTGTTGCTCGGAGACTATTTTCAGTCAGGCCACCATTGCACGATCCATC
TGTTTCTCTAAGCACCCGGGGGGCGTTTATTGTCGGAAGAATGAGGTCAT
GGTTACGAACGAATTATAACCTTAACAAGTTATAACCCACCGTCGCTTCC
ACCTTGCCGTGCCGCCGTGTATTATAACAAAAACGGCGACTGCAATCGCG
GGAAAAGCACGACACGTACAAGCGATCGCATGACGCTTTCTGCGAGATGG
TCGAGGGTGCGGGGATCAAGACCAAGGCTTGTCAGTGCTTCAAGAACGAG
AACTTTGCAGTCGTGAGGGTGATCCCGGAGTGTGTTTGCGATTCGTTGAG
ATGTTGAGGAAGAGTAGCAAGTGTACCAAGGAGGACATGTTCGCGAAAAC
GTACGGTGAGAAAGTCGTGCATGACAGCTCACGGACTTTGGTCAACTGCG
CCGGGCATCTGATCTTGTGGTTACTCATCTCGAGCTGTGTGACACTTGCG
CTAGCCAGACATGGTGTTCCGATGGTGGTGAATTCTACCCAGCGGCGAGT
AGCTAGGGTAGTCACCTACATCGAGAGTGTCGGTGAGAGCGTTGCAGAGA
GCGCCGAGGAGAGCGCGAGTGGCAGGGGCGAGAAAGGCAAGAGTAAGAAG
GGCAAGAATGAGAAGGCAAGCAAGAGCTCCAATCAGGTCTGGCACGAAGA
CTTTTCCAATTTTTTGGCCGGGTACTTTCAGCACGACTTTGGGTTGAGTG
TGTTTGTGTCGTGTCTCGGGGAGTCTAAGGTTGATATCGTCAGGAGGTCG
TACGGCGGACCCTTCACCAAGGGCATGAAACGGCGCCGCCTCAAGGTCGA
GCTGCAGAAAGGGGAAGCCCTAGTCATGGGGTCGGGGCTCAGGCACAGGG
GGTCCTCCTTTACCAAACGCAACGTGCCTCTGTTCTTGGCGTTTCTGGTA
GGAAAGAGCGAAGGTGCTTCGTTTGAAACCACGCACAACGTGCAGGGTGA
GAGAAAGATGCGGGGGGGTAAGCGCGTCGTTCAGAAGGCAGGGTTTTGGA
AGGGAGAAAGGGCGAGGCGTTGCTGATTTTATTTCACTCGTGTACAGCAG
CTGGGAGCGGAGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig165:1904..3367-

>mRNA_Ecto-sp13_S_contig165.4681.1 ID=mRNA_Ecto-sp13_S_contig165.4681.1|Name=mRNA_Ecto-sp13_S_contig165.4681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig165:1904..3367- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGAGGAAGAGTAGCAAGTGTACCAAGGAGGACATGTTCGCGAAAAC
GTACGGTGAGAAAGTCGTGCATGACAGCTCACGGACTTTGGTCAACTGCG
CCGGGCATCTGATCTTGTGGTTACTCATCTCGAGCTGTGTGACACTTGCG
CTAGCCAGACATGGTGTTCCGATGGTGGTGAATTCTACCCAGCGGCGAGT
AGCTAGGGTAGTCACCTACATCGAGAGTGTCGGTGAGAGCGTTGCAGAGA
GCGCCGAGGAGAGCGCGAGTGGCAGGGGCGAGAAAGGCAAGAGTAAGAAG
GGCAAGAATGAGAAGGCAAGCAAGAGCTCCAATCAGGTCTGGCACGAAGA
CTTTTCCAATTTTTTGGCCGGGTACTTTCAGCACGACTTTGGGTTGAGTG
TGTTTGTGTCGTGTCTCGGGGAGTCTAAGGTTGATATCGTCAGGAGGTCG
TACGGCGGACCCTTCACCAAGGGCATGAAACGGCGCCGCCTCAAGGTCGA
GCTGCAGAAAGGGGAAGCCCTAGTCATGGGGTCGGGGCTCAGGCACAGGG
GGTCCTCCTTTACCAAACGCAACGTGCCTCTGTTCTTGGCGTTTCTGGTA
GGAAAGAGCGAAGGTGCTTCGTTTGAAACCACGCACAACGTGCAGGGTGA
GAGAAAGATGCGGGGGGGTAAGCGCGTCGTTCAGAAGGCAGGGTTTTGGA
AGGGAGAAAGGGCGAGGCGTTGCTGA
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