mRNA_Ecto-sp13_S_contig16498.4680.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16498.4680.1
Unique NamemRNA_Ecto-sp13_S_contig16498.4680.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16498.4680.1 vs. uniprot
Match: D7FTF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF4_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 1.030e-81
Identity = 153/187 (81.82%), Postives = 164/187 (87.70%), Query Frame = 1 
Query:    1 LENRQRHKIEEQDADLSRLRAEIVSLKRDHERLLAENGRSSDAVGELQSQAQSNKEQHARELAWLTPKVAAAESRAEEIEGLVDQMNLKLSLLGASHRKASEEVADLKIQLSLAKADGPGAKLSDLQGEAAECRNVIRKLKG----------EVARK--GRLVTVAMSARAEVQTAYQDMKQSTEDL 525
            LENRQRHKIEEQDADLSRLRAEIVSLKRDHERLLAENGRSSDAVGELQSQAQSNKEQHARELAWLTPKVAAAESRA EIEGLVDQMNLKLSLL ASHRKASEEVADLKIQLSLAKADGPGAKLSDLQGEAAECRNVIRKLKG          +VAR+  G   ++A + + E++TA Q ++Q+ EDL
Sbjct:  255 LENRQRHKIEEQDADLSRLRAEIVSLKRDHERLLAENGRSSDAVGELQSQAQSNKEQHARELAWLTPKVAAAESRAVEIEGLVDQMNLKLSLLSASHRKASEEVADLKIQLSLAKADGPGAKLSDLQGEAAECRNVIRKLKGARILCEKQRDDVARRLEGVQGSLASAEQRELETAEQ-LRQTQEDL 440
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BLAST of mRNA_Ecto-sp13_S_contig16498.4680.1 vs. uniprot
Match: A0A6H5JEQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ6_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 4.020e-80
Identity = 150/187 (80.21%), Postives = 163/187 (87.17%), Query Frame = 1 
Query:    1 LENRQRHKIEEQDADLSRLRAEIVSLKRDHERLLAENGRSSDAVGELQSQAQSNKEQHARELAWLTPKVAAAESRAEEIEGLVDQMNLKLSLLGASHRKASEEVADLKIQLSLAKADGPGAKLSDLQGEAAECRNVIRKLKG----------EVARKGRLVTVAMSA--RAEVQTAYQDMKQSTEDL 525
            LENRQRHKIEEQDADLSRLRAEIVSLKRDHERLLAENGRSSDAVGELQS AQSNKEQHARELAWLTPKVAAAESRA EIEGLVDQMNLKLSLL ASHRKASEEVADLKIQLSLAKADGPGAKLSDLQGEAAECRNVIRKLKG          +VAR+  +   ++++  + E++TA Q ++Q+ EDL
Sbjct:  264 LENRQRHKIEEQDADLSRLRAEIVSLKRDHERLLAENGRSSDAVGELQSHAQSNKEQHARELAWLTPKVAAAESRAVEIEGLVDQMNLKLSLLSASHRKASEEVADLKIQLSLAKADGPGAKLSDLQGEAAECRNVIRKLKGARILCEKQRDDVARRLEVAQGSLTSAEQRELETAEQ-LRQTQEDL 449
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16498.4680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTF4_ECTSI1.030e-8181.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEQ6_9PHAE4.020e-8080.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16498contigEcto-sp13_S_contig16498:480..2710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score263.1
Seed ortholog evalue9.8e-68
Seed eggNOG ortholog2880.D7FTF4
Model size552
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2EUYJ@1,2SX17@2759
Cds size549
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462867.399235-CDS-Ecto-sp13_S_contig16498:479..6381681462867.399235-CDS-Ecto-sp13_S_contig16498:479..638Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16498 480..638 +
1681462867.4399993-CDS-Ecto-sp13_S_contig16498:1189..13541681462867.4399993-CDS-Ecto-sp13_S_contig16498:1189..1354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16498 1190..1354 +
1681462867.4556398-CDS-Ecto-sp13_S_contig16498:1906..20051681462867.4556398-CDS-Ecto-sp13_S_contig16498:1906..2005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16498 1907..2005 +
1681462867.4647443-CDS-Ecto-sp13_S_contig16498:2583..27091681462867.4647443-CDS-Ecto-sp13_S_contig16498:2583..2709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16498 2584..2709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16498.4680.1prot_Ecto-sp13_S_contig16498.4680.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16498 480..2709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16498.4680.1

>prot_Ecto-sp13_S_contig16498.4680.1 ID=prot_Ecto-sp13_S_contig16498.4680.1|Name=mRNA_Ecto-sp13_S_contig16498.4680.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
LENRQRHKIEEQDADLSRLRAEIVSLKRDHERLLAENGRSSDAVGELQSQ
AQSNKEQHARELAWLTPKVAAAESRAEEIEGLVDQMNLKLSLLGASHRKA
SEEVADLKIQLSLAKADGPGAKLSDLQGEAAECRNVIRKLKGEVARKGRL
VTVAMSARAEVQTAYQDMKQSTEDLEKRFRETE
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mRNA from alignment at Ecto-sp13_S_contig16498:480..2710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16498.4680.1 ID=mRNA_Ecto-sp13_S_contig16498.4680.1|Name=mRNA_Ecto-sp13_S_contig16498.4680.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16498:480..2710+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGAGAACCGGCAGCGGCACAAGATAGAGGAACAAGACGCTGACTTGAG
CCGGCTGAGAGCGGAGATAGTGTCCCTGAAGAGAGATCACGAGCGGTTGC
TGGCGGAGAATGGCCGGTCTTCAGACGCCGTCGGGGAGCTGCAGTCGCAG
GCCCAGTCGGTGAGTGTTCGAGACGCGGGTTCTGGTGCGTGCCGGGTAGG
GACGACCGCATCCGCGTACCTACTCGGAACCATATTGAACGAACCGCATG
TAATTATCCGTGTTTTGTTCAACTCTCACGGGATGCTGCAGGAAACATCG
TCGCCATTAATCAAAGCCCCCACGACACGCGCACCGCGGGTGTTGGAAGA
TTCCCTCGGGGCTTTTCTAGTTCTAGCCTTGCACACGGGCGCGAAGAGGC
AGGAAACGAGGCACCCCTAGCCTATTCACAGCATTCAAGCCTTGGCACAA
ATCGTTTCCGTTTGGGCTCTTCGGAGGGCGAAGAAACGCTCTTCTTTTCA
TCCGGATGTTTGTCCCGCAGCCGCGCCCTTGGGATGGGCACGCCCTGCCT
ACCCCGTTGTACTTTGTGACGAAACCTTGACATGGTTTTGCTACACCTCA
AAAAGAGCGGTTGTCATGCCTACATACCACCACCCCCCAGCCCTCCCGCG
AGGTTTTGGCCGCCTATAGCCCCCCCCCCCCCCCCCCTTCCCCCCGCCCT
GCTGTACCAGAACAAGGAGCAGCACGCGAGGGAACTGGCGTGGCTAACCC
CGAAGGTTGCCGCGGCCGAGAGCCGAGCAGAAGAGATCGAGGGCTTGGTG
GACCAGATGAACCTCAAGCTCTCGCTGCTTGGCGCCAGCCACAGGAAGGC
CTCCGAGGAGGTCGCAGACCTTAAGGTTGAACAAGCCCTACTACTGTTCC
GACTGCAGGACTTCAAGTTGTGGCCGTGTGGTACCTCGGCTATTAGAATT
AGCGGTTTCTTTCTGACGTTAGGGATTTGCTTTTCACGACGTACATGTCT
TGAACCCCACCCACCCTTACCGAAACGTACGTGTGGCGTCCCCGAACACT
GAAAAATAAAAAAATCGAACAATAAAATATGAAATACACACTCACACACA
TCTTTGTCCGCGTCTTCCCTAGTGGTTTCGCGACTGAATAAAGGTGGGGG
CAAGGGTTGCGCAAAGTATCGGGTGAGGAGCGATCTGTAGCGGTTCTTCA
TGGACACTTGGCACGCTAATCGTTGCTCTCGCACTAACGTCAGAGCCTCA
CCCAGATGGCTAAGGTCGAGAAGACTTGAAACTGTTTTATGCCCCCGCAC
CTGAAATGCAGCGACTCCCTGTTTCACAAGGCGTACTCCTGAGGGAGCCT
TTGTTCAGCGCTAGAATATGTTTTACAGATGGCCACAATGAGGATCCCAA
AGCAGAAATCCACGCTGCTCGCCGCAGATCCAGCTATCTCTAGCGAAAGC
GGATGGCCCCGGTGCGAAGCTTTCCGATCTGCAGGGGGAGGCCGCGGAGT
GTAGGAACGTTATCAGAAAGCTCAAGGTGAGACTTCCAAGGGCAGACATG
GTACTAGGATATGGTTTCGTCATATATTCTATTGACCGTCGCTCGACGTT
TCTACCCGTCATATCACGAGGCCTCGTTTCTTTTGAACGAAACGGAGAGC
TTCGATCCGGCGAATGGATTCCTCTGCGTTGCATACATGCCTTCGTATTC
AACGTGGGAAGGAGTTGCAAATGTCGATGGCGAGATTTCCGGCCAACTTT
CGGGCAGACAGGGCCAGCAGTTGAACTCGGGACAAGCCAAAACGACGAAA
ATAAAACTAAGAACGAAGTGACTACTCAGTTATCTCCCGTGCTCAGTATC
TAGGGTAGCCCGGCCGCCGCGCATTGACAACTGCCAGATGTACTTGAGCG
AAAGCAGCATGCCCGACCAGACAAGCATTTGGGCGAATCATATTACAATA
GGGCAGCGCATGACACAACCAAACGCGTCACCCCAACGCACGGTCGTGTT
TTGTTCCCTCAATTTTCCATCCCGCAAATTGTTTCGCACAAATTGTTGCC
GCACCGCGCCGCTCATTGCCCTGTGTCCTAAACCCCGCTGTCGTTCCTTT
GAAGGGAGAGGTCGCGAGAAAGGGTCGGCTCGTAACGGTGGCGATGTCAG
CGAGGGCGGAGGTGCAAACCGCGTACCAAGACATGAAGCAGAGCACGGAG
GACCTAGAGAAACGCTTCCGAGAGACCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16498:480..2710+

>mRNA_Ecto-sp13_S_contig16498.4680.1 ID=mRNA_Ecto-sp13_S_contig16498.4680.1|Name=mRNA_Ecto-sp13_S_contig16498.4680.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16498:480..2710+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGAGAACCGGCAGCGGCACAAGATAGAGGAACAAGACGCTGACTTGAG
CCGGCTGAGAGCGGAGATAGTGTCCCTGAAGAGAGATCACGAGCGGTTGC
TGGCGGAGAATGGCCGGTCTTCAGACGCCGTCGGGGAGCTGCAGTCGCAG
GCCCAGTCGAACAAGGAGCAGCACGCGAGGGAACTGGCGTGGCTAACCCC
GAAGGTTGCCGCGGCCGAGAGCCGAGCAGAAGAGATCGAGGGCTTGGTGG
ACCAGATGAACCTCAAGCTCTCGCTGCTTGGCGCCAGCCACAGGAAGGCC
TCCGAGGAGGTCGCAGACCTTAAGATCCAGCTATCTCTAGCGAAAGCGGA
TGGCCCCGGTGCGAAGCTTTCCGATCTGCAGGGGGAGGCCGCGGAGTGTA
GGAACGTTATCAGAAAGCTCAAGGGAGAGGTCGCGAGAAAGGGTCGGCTC
GTAACGGTGGCGATGTCAGCGAGGGCGGAGGTGCAAACCGCGTACCAAGA
CATGAAGCAGAGCACGGAGGACCTAGAGAAACGCTTCCGAGAGACCGAG
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