mRNA_Ecto-sp13_S_contig16487.4675.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16487.4675.1
Unique NamemRNA_Ecto-sp13_S_contig16487.4675.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16487.4675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16487contigEcto-sp13_S_contig16487:951..2632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size589
Hectar predicted targeting categoryother localisation
Exons4
Cds size372
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16487.4675.1prot_Ecto-sp13_S_contig16487.4675.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16487 1543..2621 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462866.9211264-UTR-Ecto-sp13_S_contig16487:950..10781681462866.9211264-UTR-Ecto-sp13_S_contig16487:950..1078Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16487 951..1078 +
1681462866.9392023-UTR-Ecto-sp13_S_contig16487:1464..15421681462866.9392023-UTR-Ecto-sp13_S_contig16487:1464..1542Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16487 1465..1542 +
1681462866.9901958-UTR-Ecto-sp13_S_contig16487:2621..26321681462866.9901958-UTR-Ecto-sp13_S_contig16487:2621..2632Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16487 2622..2632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462866.9518201-CDS-Ecto-sp13_S_contig16487:1542..15901681462866.9518201-CDS-Ecto-sp13_S_contig16487:1542..1590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16487 1543..1590 +
1681462866.962175-CDS-Ecto-sp13_S_contig16487:1925..20391681462866.962175-CDS-Ecto-sp13_S_contig16487:1925..2039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16487 1926..2039 +
1681462866.9732723-CDS-Ecto-sp13_S_contig16487:2411..26211681462866.9732723-CDS-Ecto-sp13_S_contig16487:2411..2621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16487 2412..2621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16487.4675.1

>prot_Ecto-sp13_S_contig16487.4675.1 ID=prot_Ecto-sp13_S_contig16487.4675.1|Name=mRNA_Ecto-sp13_S_contig16487.4675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
MVATMLNSRALFLDKQGKHAEAEPLYIRAIDTLAPDHPDFPVWLGNRASL
LEKRGNDSKANRLFLRAIKIGEKTLGSDHPQLAAMLNNRAVLLQKRVRCD
CCCHETCTGDLWMLDSGREYSLL*
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mRNA from alignment at Ecto-sp13_S_contig16487:951..2632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16487.4675.1 ID=mRNA_Ecto-sp13_S_contig16487.4675.1|Name=mRNA_Ecto-sp13_S_contig16487.4675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1682bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16487:951..2632+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGGAAGATTCCTGAGGCGGACTCTCTGTCCCTTCGAGCTGCCGACATC
GGGGAGAAAACCCTAGGCCCTGAGCACCCCGACCATGCTGCAATTCTCTC
TACTCGGGCTTGGGTGCTAGCGGCACAGGTTAGAGCCGTCAGACTTTGCC
ATGGAACTTCGCGTGGTTGTCCTTGGATGTTTTTGTGGACTGCTGACTGG
TCAAGCAAATCTTAGAGAGTTTCGTGCAACTTTCGCTTGTGTCCAAGTAC
ATGTTCGTGACCCCTTTCACATTGTTTCAGGTAGGCGGAGGCCTGACAAA
CAACAGCCCTGGTTGCTACGAATGAGAAGCATGCTCAGACCGAGACACGC
GATGATCGGGTTTGACGCTATGCGAGATTCGGCACTGGGCGGGAGCGGCC
GGATACGCCTGATCGATTACCTCGCTTGTTTGTTGTGTCGTTTTTTGGTT
ATTTCTCTGCAGTCGATCTGTGAAGTCTTGACTTCAATCCTGTTGTTTCC
CCCTCGTGCAATAGGGCAAGGATTCTGAGGCGGACCGTCTGTACCTTCGA
GCCATCGAGATTGGGGAGAAAACATTGGGGCCTGACCACCTCATGGTTGC
CACCATGCTCAACAGCCGGGCGTTATTTTTGGACAAGCAGGTGGGAGCTA
CTGAAACGTAACTGGCAACGTGTACCGGCGAGCCATTGATGTTGTATGGT
GGGCGGGAGTGTTAAGTATTAAATGAAAGACTTGAGGAGCAGGGTTAGCA
CGCAAGTGTTGGCGCACTGTTTCGATTCCAGTGAGCCACGGCTTCCCAGA
GCGCAGTGCTTGAAACAGTGACAAGTACGTTGAGGCTGGGCCACAGGAGA
GAACGCGCTGTGCCTGAAAAACCCTGGCGTGGCAGAATCGCTCAGTAGCC
ACGGCGTGGTTGTTGAGAGCTTCATCTTCGGCAGTCTTCAGCAGCCTTAA
CGACTATGCTCCCGTCATACTTCAGGGCAAGCATGCTGAGGCCGAACCTC
TGTACATTCGAGCTATCGACACATTGGCCCCTGACCACCCTGATTTCCCG
GTTTGGCTTGGCAACCGGGCGTCGCTGTTGGAGAAACGGGTGAGAGCTTG
CAACAATTTCCGGAAGCCTATTCGTGATTTTTGTGTTGGAGGTTGTAGGA
CATGCAGGATGTCCCGGTCATTTCGAGGAGTTGTGTTGAAGTTCTTGCCC
GTGGCACGCATGTCTTGGTGCAATTCATCGTGTCTGGTGAGCTATTACCT
CAAACCCATGGTCCATCGACTTGTTGACTTGTTACGCATTGACAGATCGT
GAAGGCTAGCCACAACGACCGTTCAAAAACTTATCGAAAGCCGATCTTAT
GCCGGAAATCCGGACACGACCCAACCACTCAGCACCAAGGCAATGTTTGT
TCAGCTGGTGTTCCTACGCGTTCTATCGGCAAACCTAGAGTTTTCCCCCC
TCGTTTTTCAGGGAAATGATTCTAAGGCGAACCGCCTGTTCCTTCGAGCC
ATCAAGATCGGGGAGAAGACGTTAGGCTCTGATCACCCGCAGCTTGCCGC
CATGCTCAACAACCGGGCGGTATTGTTACAGAAACGGGTCAGATGTGACT
GCTGCTGCCACGAAACGTGTACTGGCGACCTATGGATGTTGGATTCCGGA
AGGGAGTATTCACTGTTGTAGATAGGTTTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16487:951..2632+

>mRNA_Ecto-sp13_S_contig16487.4675.1 ID=mRNA_Ecto-sp13_S_contig16487.4675.1|Name=mRNA_Ecto-sp13_S_contig16487.4675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16487:951..2632+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGCCACCATGCTCAACAGCCGGGCGTTATTTTTGGACAAGCAGGG
CAAGCATGCTGAGGCCGAACCTCTGTACATTCGAGCTATCGACACATTGG
CCCCTGACCACCCTGATTTCCCGGTTTGGCTTGGCAACCGGGCGTCGCTG
TTGGAGAAACGGGGAAATGATTCTAAGGCGAACCGCCTGTTCCTTCGAGC
CATCAAGATCGGGGAGAAGACGTTAGGCTCTGATCACCCGCAGCTTGCCG
CCATGCTCAACAACCGGGCGGTATTGTTACAGAAACGGGTCAGATGTGAC
TGCTGCTGCCACGAAACGTGTACTGGCGACCTATGGATGTTGGATTCCGG
AAGGGAGTATTCACTGTTGTAG
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