mRNA_Ecto-sp13_S_contig16480.4672.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16480.4672.1
Unique NamemRNA_Ecto-sp13_S_contig16480.4672.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16480.4672.1 vs. uniprot
Match: D8LEC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC0_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 1.750e-80
Identity = 171/272 (62.87%), Postives = 187/272 (68.75%), Query Frame = 1 
Query:    1 TARSACCELQLAAIENRADAHRAGAESAQVRNNLQATTKMLKRTEVQKQASATARSACYEYQLAEIENRQDAYRWTIALAHGKHEVQKMTEVVARFNVQTQASALQRLGMRSLNAALVKEEGKTEKAERDLATCRAKYEECRSSLQSAREQMARDSTQAEAVDEAARKAATQENETGPQAQQQQVSEGCHASTATDAELDEEGFGLKHMEEAMLRSLEEDSKQGGGRDPQQRNVSSVPWAKATAAPARRXXXXKNEASPAASTNRWAVFADD 816
            TARSAC E QLA +ENRAD+HRA AESA+V+  LQ  TK+LK                                                     FNVQTQ   LQRLGMRSLNAAL+KEEGKTEKAERD+ATCRAKYEECRSSLQSAREQMARDS QAEAV EAARKAATQ  ETGPQAQ+QQV++G HASTA+DA+LDEEGFGL+HME+AMLRSLEE+ KQ G  DPQQ  VSS P AKA AAPAR XXXX     P ASTNRWAVFA+D
Sbjct:   99 TARSACYEFQLAVVENRADSHRASAESARVKTQLQTRTKLLKXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNVQTQ---LQRLGMRSLNAALMKEEGKTEKAERDMATCRAKYEECRSSLQSAREQMARDSAQAEAVKEAARKAATQGKETGPQAQKQQVAQGSHASTASDAKLDEEGFGLQHMEQAMLRSLEEEVKQDGVCDPQQGKVSSAPRAKAIAAPARXXXXXXXXXLPTASTNRWAVFAED 364
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BLAST of mRNA_Ecto-sp13_S_contig16480.4672.1 vs. uniprot
Match: A0A6H5K864_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K864_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.290e-22
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  481 AVDEAARKAATQENETGPQAQQQQVSEGCHASTATDAELDEEGFGLKHMEEAMLRSLEEDSKQGGGRDPQQRNVS 705
            AV+EAARK ATQ  ETGPQAQQQQ+ +G HASTA+DA+L +EGFGL+HMEEAMLRS+EE SKQ GGR+PQQ  VS
Sbjct:   36 AVEEAARKGATQGKETGPQAQQQQLPQGSHASTASDAKLGKEGFGLRHMEEAMLRSMEE-SKQDGGRNPQQGKVS 109
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BLAST of mRNA_Ecto-sp13_S_contig16480.4672.1 vs. uniprot
Match: A0A6H5KTB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB2_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.170e-21
Identity = 68/139 (48.92%), Postives = 78/139 (56.12%), Query Frame = 1 
Query:    1 TARSACCELQLAAIENRADAHRAGAESAQVRNNLQATTKMLKRTEVQKQASATARSACYEYQLAEIENRQDAYRWTIALAHGKHEVQKMTEVVARFNVQTQASALQRLGMRSLNAALVKEEGKTEKAERDLATCRAKYE 417
            TARSAC E QLA +ENRAD+H+AGA+ A+V+ +L   TK+ +RTE +K                                               FNVQTQASA QRL M  LNAALVKEEGKTEKAERDLATCRAKYE
Sbjct:   22 TARSACYEFQLAVVENRADSHKAGADLARVKTDLPTKTKLFRRTEAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXFNVQTQASAPQRLRMLCLNAALVKEEGKTEKAERDLATCRAKYE 157
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BLAST of mRNA_Ecto-sp13_S_contig16480.4672.1 vs. uniprot
Match: D8LEC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC9_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 3.730e-5
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:  232 ALAHGKHEVQKMTEVVARFNVQTQASA-LQRLGMRSLNAALVKEEGKTEKAERDLATCRAKYE 417
            AL H   E +  T       +  +A   LQRLGM  LN A++KEE KT+KAERDLATCRAKY+
Sbjct:   84 ALVHTVEESRAETATANEKTMLIEAQRDLQRLGMLFLNGAIIKEEEKTKKAERDLATCRAKYD 146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16480.4672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LEC0_ECTSI1.750e-8062.87Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K864_9PHAE1.290e-2274.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTB2_9PHAE1.170e-2148.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEC9_ECTSI3.730e-552.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16480contigEcto-sp13_S_contig16480:1119..3519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size969
Hectar predicted targeting categoryother localisation
Exons6
Cds size969
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16480.4672.1prot_Ecto-sp13_S_contig16480.4672.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16480 1119..3519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462866.6962078-CDS-Ecto-sp13_S_contig16480:1118..12341681462866.6962078-CDS-Ecto-sp13_S_contig16480:1118..1234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16480 1119..1234 -
1681462866.7052734-CDS-Ecto-sp13_S_contig16480:1534..16481681462866.7052734-CDS-Ecto-sp13_S_contig16480:1534..1648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16480 1535..1648 -
1681462866.7158995-CDS-Ecto-sp13_S_contig16480:2096..24181681462866.7158995-CDS-Ecto-sp13_S_contig16480:2096..2418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16480 2097..2418 -
1681462866.7248085-CDS-Ecto-sp13_S_contig16480:2722..28271681462866.7248085-CDS-Ecto-sp13_S_contig16480:2722..2827Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16480 2723..2827 -
1681462866.7341645-CDS-Ecto-sp13_S_contig16480:3022..31781681462866.7341645-CDS-Ecto-sp13_S_contig16480:3022..3178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16480 3023..3178 -
1681462866.7509816-CDS-Ecto-sp13_S_contig16480:3363..35191681462866.7509816-CDS-Ecto-sp13_S_contig16480:3363..3519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16480 3364..3519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16480.4672.1

>prot_Ecto-sp13_S_contig16480.4672.1 ID=prot_Ecto-sp13_S_contig16480.4672.1|Name=mRNA_Ecto-sp13_S_contig16480.4672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=323bp
TARSACCELQLAAIENRADAHRAGAESAQVRNNLQATTKMLKRTEVQKQA
SATARSACYEYQLAEIENRQDAYRWTIALAHGKHEVQKMTEVVARFNVQT
QASALQRLGMRSLNAALVKEEGKTEKAERDLATCRAKYEECRSSLQSARE
QMARDSTQAEAVDEAARKAATQENETGPQAQQQQVSEGCHASTATDAELD
EEGFGLKHMEEAMLRSLEEDSKQGGGRDPQQRNVSSVPWAKATAAPARRR
REKKNEASPAASTNRWAVFADDEDDDDDEGKGAEGAAPADATPVRSLPGR
GRTRGKSPSPSRRRANNERQNS*
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mRNA from alignment at Ecto-sp13_S_contig16480:1119..3519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16480.4672.1 ID=mRNA_Ecto-sp13_S_contig16480.4672.1|Name=mRNA_Ecto-sp13_S_contig16480.4672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16480:1119..3519- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGCACGCTCAGCCTGCTGTGAGTTACAGCTGGCTGCTATCGAGAACAG
GGCAGACGCCCACAGGGCTGGCGCTGAATCGGCGCAAGTCAGGAACAACC
TGCAGGCGACGACAAAGATGCTAAAACGGACCGAGGTCCAGAAGCAGGCA
AGTGCTGTGAGAGCGTCTCGACCCTTCTGATTTCACCCTCCATTCCCCTC
CGCATGACTCTCCCTGTGTTTGAGTATTCAGTAGCACACTACTGCACACA
TCATCAACATGTGCGACTTTCGGCACGTGGACATTGAAAGAGCAAGTAAA
CCTCCCACACCCCGCATTACGTACGCCGCGCTCGTCTGCAGACGGCACGC
TCGGCCTGCTACGAGTACCAGCTGGCGGAAATAGAGAACAGGCAAGACGC
CTACAGGTGGACCATTGCGTTGGCGCACGGCAAGCATGAAGTGCAGAAAA
TGACCGAGGTGGTAGCCCGGTTCAACGTCCAGACGCAGGCAAGTGCTGTG
ACAGAGCCTCACACGTTCTGATTTGTTGCGTCGTTGAGCTGAGCAGAAAC
TGTTCATGAAGCTACGTATTGGACAGTTCTACAGTACATCAGCATGTAGC
CTGTACACTACCCTTAATGGTATCCTGGCATCGTTTGTCGCCGGCCGCAA
ATCCCCCTGCCCGCACCTCCACCTTCCAACCCTGGCCTACAGCTCCAGCG
CTTAGGGATGCGTTCTCTGAACGCCGCCTTGGTGAAGGAGGAAGGGAAGA
CGGAAAAGGCGGAACGTGACTTGGCTACTTGTCGTGCCAAGTACGAGGTA
CGCGCACGCTCTGATATGAAGGTATCTTGCTGCACAGCGTGAAAGGGACC
CGCGCGCACGACAGACACCGATTAGCTGGCCCTGATAGACCACAGCCGTG
ATGATTAGACGATTCGGTAGTGAGTTTGATTTGTGCATCTCTCGGTGAAA
CTTGTACAGTGCAACTTTGCATGACTGATGTGTAGTCTATGCTAACAGTA
TGCTTCGCTACGCATAGTCTAAGCCACAGTCCAATGTCTTCCCCAAGTGT
TCAAGGTTGCATGAAATACTCCACTCTTCACCCTTTTGCGGCGCTTGTCA
GGAATGTCGGTCCTCGTTGCAGTCGGCGAGGGAGCAGATGGCGAGGGACT
CTACTCAGGCGGAGGCCGTCGACGAGGCTGCCCGCAAGGCGGCAACGCAG
GAGAACGAGACGGGGCCTCAAGCCCAGCAGCAGCAAGTGTCCGAGGGCTG
CCACGCGTCAACGGCCACCGACGCCGAGCTGGACGAGGAAGGGTTCGGCC
TCAAGCACATGGAAGAGGCGATGCTTCGGTCTTTGGAGGAGGATTCCAAG
CAAGGCGGGGGGCGTGATCCACAACAGAGAAATGTTTCATCGGTACCGTG
GGCTAAGGCGACAGCAGCACCGGGTAAGTATGCATTGTTGCTCGAAGTAT
GAAAACCGGAACTAACCCTGTAGGCTCAAATCACACCTTGTCGCCAAGGG
GCCCTGAACGTAGCTCGCTGATACTGTGGAGTATCCACATACTAACTACT
CTGGTAGTGGGGCTTGGCGATGTAGACAGGCAGGCGAGCACCCGTCGTAC
GTAGCGGAGCGAGTGAATCATTCAACGTACTCAAGAGTTCTCTCGACGGA
ATCGAGAAGAAAGAGACCGTTTGAAACGAGGTCGACCGCAGCCACCAGTG
TGCCGTCGAAGTCAAATATGTAGCAGAACACCCTGTGGCAAGATTGACCT
GAGTAAGACAGGGCTCTTTAGGCAGCAGCAAAGTTGCAGTAGTGCCCTCA
CCACCGCCAACCCAGGCATTGTGACCAACCCTTTCTCCACCTACACGCTT
CTTCCCCTATGGCGCCAAAAGCGAGGAGGAGGAGGGAGAAGAAGAACGAG
GCCTCCCCCGCAGCGTCAACCAACCGGTGGGCGGTTTTCGCCGACGACGA
GGATGACGACGATGACGAGGGCAAGGGAGCAGAAGGTGAGGTCTCTGCTA
ATAGATACTACTGCAGTCGATGCACCTATCTCAGGTAGCAGGAACATCTC
TCGACCCGTCATGCCCCCTTCCTGTGGTCGGCGAAAGTCTTGAGGGTGTC
CGCCCCGGCTTTACGAGGGTCACGACGTTCCCTGCAGTCTGTGGCGTGAA
AATGATCCACTGTAGCGGTCCATTTACGTGATCCAAGAACGATTTTTTCT
TCATTCGCCCTCCTCGGTTACTCGTGCACTCGCTTTCTTCCACCCGGTTT
TTCCACACGCCAAACGTTGACGCCAAACGTTGCAGGAGCAGCGCCCGCCG
ACGCCACGCCAGTCAGGTCGCTCCCCGGCAGGGGTCGAACCCGCGGCAAG
TCGCCGAGCCCGAGTCGCCGCCGGGCCAACAATGAACGCCAAAACTCCTA
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16480:1119..3519-

>mRNA_Ecto-sp13_S_contig16480.4672.1 ID=mRNA_Ecto-sp13_S_contig16480.4672.1|Name=mRNA_Ecto-sp13_S_contig16480.4672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16480:1119..3519- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGCACGCTCAGCCTGCTGTGAGTTACAGCTGGCTGCTATCGAGAACAG
GGCAGACGCCCACAGGGCTGGCGCTGAATCGGCGCAAGTCAGGAACAACC
TGCAGGCGACGACAAAGATGCTAAAACGGACCGAGGTCCAGAAGCAGGCA
AGTGCTACGGCACGCTCGGCCTGCTACGAGTACCAGCTGGCGGAAATAGA
GAACAGGCAAGACGCCTACAGGTGGACCATTGCGTTGGCGCACGGCAAGC
ATGAAGTGCAGAAAATGACCGAGGTGGTAGCCCGGTTCAACGTCCAGACG
CAGGCAAGTGCTCTCCAGCGCTTAGGGATGCGTTCTCTGAACGCCGCCTT
GGTGAAGGAGGAAGGGAAGACGGAAAAGGCGGAACGTGACTTGGCTACTT
GTCGTGCCAAGTACGAGGAATGTCGGTCCTCGTTGCAGTCGGCGAGGGAG
CAGATGGCGAGGGACTCTACTCAGGCGGAGGCCGTCGACGAGGCTGCCCG
CAAGGCGGCAACGCAGGAGAACGAGACGGGGCCTCAAGCCCAGCAGCAGC
AAGTGTCCGAGGGCTGCCACGCGTCAACGGCCACCGACGCCGAGCTGGAC
GAGGAAGGGTTCGGCCTCAAGCACATGGAAGAGGCGATGCTTCGGTCTTT
GGAGGAGGATTCCAAGCAAGGCGGGGGGCGTGATCCACAACAGAGAAATG
TTTCATCGGTACCGTGGGCTAAGGCGACAGCAGCACCGGCGAGGAGGAGG
AGGGAGAAGAAGAACGAGGCCTCCCCCGCAGCGTCAACCAACCGGTGGGC
GGTTTTCGCCGACGACGAGGATGACGACGATGACGAGGGCAAGGGAGCAG
AAGGAGCAGCGCCCGCCGACGCCACGCCAGTCAGGTCGCTCCCCGGCAGG
GGTCGAACCCGCGGCAAGTCGCCGAGCCCGAGTCGCCGCCGGGCCAACAA
TGAACGCCAAAACTCCTAG
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