mRNA_Ecto-sp13_S_contig16477.4669.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16477.4669.1
Unique NamemRNA_Ecto-sp13_S_contig16477.4669.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16477.4669.1 vs. uniprot
Match: A0A6H5JI22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI22_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.390e-28
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 2 
Query:    2 EGGRGFAKNMATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKAVLGVSPLPPNKATVAS 196
            EGGRGF KNMATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKAVLGVSPLPP+KATVAS
Sbjct:  398 EGGRGFVKNMATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKAVLGVSPLPPDKATVAS 462
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BLAST of mRNA_Ecto-sp13_S_contig16477.4669.1 vs. uniprot
Match: D7G8X0_ECTSI (Mitochondrial carrier protein-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X0_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 2.920e-27
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 2 
Query:    2 EGGRGFAKNMATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKAVLGVSPLPPNKATVAS 196
            EGGRGFAKNMATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIK VLGVSPLPP++AT  S
Sbjct:  270 EGGRGFAKNMATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKVVLGVSPLPPDEATADS 334
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BLAST of mRNA_Ecto-sp13_S_contig16477.4669.1 vs. uniprot
Match: A0A836CFD2_9STRA (Mitochondrial carrier protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFD2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.070e-5
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 2 
Query:   14 GFAKNMATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKAVLGVS--PLP 172
            G  K++  +  + G +GLY G QPR+++S LFTAVGFGSFEA+K +L V   PLP
Sbjct:  243 GVIKSLTKLGREGGIRGLYVGAQPRMLLSSLFTAVGFGSFEAMKTLLQVDDHPLP 297
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BLAST of mRNA_Ecto-sp13_S_contig16477.4669.1 vs. uniprot
Match: A0A448Z9E8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9E8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.730e-5
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 2 
Query:   29 MATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKAVLGVS 163
            M  +V + GWKGLYAG   RV+ SG F+A+GFG+FE +K  LGVS
Sbjct:  364 MLHVVGEVGWKGLYAGAGSRVLWSGAFSAIGFGTFELVKGYLGVS 408
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16477.4669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JI22_9PHAE2.390e-2896.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8X0_ECTSI2.920e-2792.31Mitochondrial carrier protein-like n=1 Tax=Ectocar... [more]
A0A836CFD2_9STRA2.070e-552.73Mitochondrial carrier protein-like protein n=1 Tax... [more]
A0A448Z9E8_9STRA2.730e-557.78Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16477contigEcto-sp13_S_contig16477:2..2255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score107.8
Seed ortholog evalue2.1e-21
Seed eggNOG ortholog2880.D7G8X0
Model size1487
KEGG koko:K15111,ko:K15113
KEGG TC2.A.29.18,2.A.29.5
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006839,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0010035,GO:0010038,GO:0010039,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085
Exons2
EggNOG free text desc.S-adenosyl-L-methionine transmembrane transport
EggNOG OGsKOG0768@1,KOG0768@2759
Cds size222
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462866.3647742-UTR-Ecto-sp13_S_contig16477:1..291681462866.3647742-UTR-Ecto-sp13_S_contig16477:1..29Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16477 2..29 +
1681462866.3978586-UTR-Ecto-sp13_S_contig16477:1018..22551681462866.3978586-UTR-Ecto-sp13_S_contig16477:1018..2255Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16477 1019..2255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462866.3776813-CDS-Ecto-sp13_S_contig16477:29..721681462866.3776813-CDS-Ecto-sp13_S_contig16477:29..72Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16477 30..72 +
1681462866.3897452-CDS-Ecto-sp13_S_contig16477:839..10181681462866.3897452-CDS-Ecto-sp13_S_contig16477:839..1018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16477 840..1018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16477.4669.1prot_Ecto-sp13_S_contig16477.4669.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16477 30..1018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16477.4669.1

>prot_Ecto-sp13_S_contig16477.4669.1 ID=prot_Ecto-sp13_S_contig16477.4669.1|Name=mRNA_Ecto-sp13_S_contig16477.4669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKAVLGVSPLPPN
KATVASSSSSSSAAAAAATTRRR*
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mRNA from alignment at Ecto-sp13_S_contig16477:2..2255+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16477.4669.1 ID=mRNA_Ecto-sp13_S_contig16477.4669.1|Name=mRNA_Ecto-sp13_S_contig16477.4669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2254bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16477:2..2255+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAGGCGGGAGGGGTTTCGCGAAGAACATGGCAACTATCGTTGCGGACG
ACGGGTGGAAGGGCCTCTACGGTAAGGAGTTTTGATTTTCATGTTTCCTC
CACAAGCGTTCCCTTTTGTTCAGCCTTTCAGTCAACTTTTTGTCTAGGTT
GGGTTTCACTGCCGTACGGTAACTTCCATCGTTCCCAAATTCCTTGTCAG
CGTAATGTTTTTCGTGGGTTCCCATCTACCGATTTTCCATTGTGGGGGTG
AGAGGTGCTGTTTAATCCCGCAAAATAGAGCCGTGGAAATACCTCCTGCG
AAGTTTTTCCTATGACAGCGAGTCAGTTACCAAGGCTATGGGCCGCGCGT
TTATCAAGCGTCGTGATACTCTTTTTCAACTGGTTTTTTTTCATTGTTTT
GGTTACCCGCAGTTAGTGACATTTTGGCACCCCGAAAGCTTTGAGTCACC
TCGTGCGGAAAATGACGGCCGGGGCCGTCGCATTCGGACGCTGGAGCAGC
GACCACGCCGTCCGGGGCGTAGGAAGTTGGCAGAAAAGGCGGGAAGTGAT
ATCGATAGGATAGGGTAGAGAGACATTTTCGAGCCACCTTTGGCATAGTA
GGAAGGAACGATTGGCCATCTTTCCCGTGGGAACAATCAATGCTCCGTCC
TCTCGGGGACGCATGGTCAATGGTTAAACAAGGAAGGCACGCAACACATG
AGTACGCCCCCCTGGTCCGGCGAGAACCCGGCGCACTCCGTCCCGGCTTT
GTAGGGATGAGAGGTCAATGGTTTAACGACTACGGCATGCACGACTATGA
GTACACCCCCCTCCCCCGCTCCCCGCTTATTAATACAGCGGGTTTCCAAC
CTCGAGTTGTGATGTCGGGGCTGTTCACGGCGGTCGGTTTCGGGTCATTC
GAGGCCATCAAGGCGGTGCTGGGGGTGTCGCCTTTACCGCCAAACAAGGC
TACGGTCGCTTCATCCTCCTCTTCTTCTTCTGCTGCTGCTGCTGCTGCGA
CAACGCGGCGACGTTGAGATAATCGATGGCAGGCGACGTGGAGGGAGGAG
TGTTTTCCCGTCAAGGGTGTGTTTTTGCGTTATCGTCGTCGAGAAGAGCT
GCTCCTTCATGACAACCAGGATGACCGGGGTTTAATAGATCATAGTGGCA
GGGGTGCTGGCGCTGAGTTGGTCGTCTTGGGCTGGATCCTTGTTCTCTTG
GCACTGCAAGAGCGTAACGATGACATCGCTATGTGACTAGAGGCGCACCC
GTCACGCGAGAGCTCGTTGCATAGAGCTGTTATTGCTTTTCATGCAGGAG
ATCGGGATGCCTGGGGGGGTCCTCATGGTCGTACGGGCCGTTATCTTTTG
ACCGCGATCTCGCATCAACGGGATGTGTGTAGACTGAGAATGTTTGGGAT
TGCGCGCGAGTCTGGGGATGCGCACAGGTGTGGGGGCGTGATTGAGGCAA
GTGAAATTCGCCGAGGTTTTTGATTGCACAATTTCTGGCGAGTACCAAAT
GCAGACGCCTTGTTCTAGCCTGCAAATAGAGAGGGAGCTCGGGATGCATT
CGAGAGACCGTGTTTGGGAAATGTTAAACTTGCCAGCATGGAGGGGAGCA
CGGGACTGTTGGGTTGTGTACTTGTGCCGGAAACTATAAACGGGCTTGCA
TCTTGGTAGTGCATTCAAGGAAGCGAGTACCATGTCACTAGACCAATGTG
TACTGTTCGACGTCTTTTGTCACCACTACGTTTTGAGGATACAGGGTTTG
GTTAGGGGAAGGGTTCGCGGATTTTCTAGTTAGAGTATGCATTTCTTGCT
GCAGAGGGGCACCTACCGAGCAGCAGTCGTTCAGATGGACGGAACCCGTC
GGCTCTCCTGGTACGTATGCTACTGCTGGCATGGCTTGCCTTGAGAGATT
CGTTTCGTGAAGGGGGTTTGGTTTCGCCCGCGACCGCATATCGGACACCA
TAAAAACTGTTGGGTTTGGGGTGTTGCTTGTATTTGTGTTTTGGGTATTT
TTGTTTTTCAGGTTTGGGGACGCAATGTCGAGTAGGTTTTGTTTTACTGC
TCAGCACTTCGGTATTCAGAAATGAAAGTCGGATTTGTCTGTCTCGCACT
TAGAGTTAGGTGCTAGACAGGTTTAGTAAACTTGTGAACGATCTCGCTAT
GGTACGGTAGATCGTCGTGGTACAGCAGTATTCGACAAGCATAGATTAGA
TAGCTTGAATCAGTTGATGCTAGGTGTTGGAATCCACTGTCGAACCAAGT
CGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16477:2..2255+

>mRNA_Ecto-sp13_S_contig16477.4669.1 ID=mRNA_Ecto-sp13_S_contig16477.4669.1|Name=mRNA_Ecto-sp13_S_contig16477.4669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16477:2..2255+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAACTATCGTTGCGGACGACGGGTGGAAGGGCCTCTACGCGGGTTT
CCAACCTCGAGTTGTGATGTCGGGGCTGTTCACGGCGGTCGGTTTCGGGT
CATTCGAGGCCATCAAGGCGGTGCTGGGGGTGTCGCCTTTACCGCCAAAC
AAGGCTACGGTCGCTTCATCCTCCTCTTCTTCTTCTGCTGCTGCTGCTGC
TGCGACAACGCGGCGACGTTGA
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