mRNA_Ecto-sp13_S_contig16476.4668.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16476.4668.1
Unique NamemRNA_Ecto-sp13_S_contig16476.4668.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16476.4668.1 vs. uniprot
Match: D7FNA2_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA2_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.780e-27
Identity = 54/67 (80.60%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 AADAEMGDRPLARPLAPLPQPQPALKPMQMKVRLSFRTDIGGMSENQDNCFIWRHEPSGSFVIGVLD 201
            AADAEMGDRPLAR             PMQMKVRLSFRTDIGGMSENQDNCFIWRHEPSGSFVIGVLD
Sbjct:   80 AADAEMGDRPLARXXXXXXXXXXXXXPMQMKVRLSFRTDIGGMSENQDNCFIWRHEPSGSFVIGVLD 146
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BLAST of mRNA_Ecto-sp13_S_contig16476.4668.1 vs. uniprot
Match: A0A835Z8N4_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.450e-16
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:   82 MQMKVRLSFRTDIGGMSENQDNCFIWRHEPSGSFVIGVLD 201
            M +KVRLSFRTDIGGMSENQD CF+WRHEPSGS VIGVLD
Sbjct:    1 MSVKVRLSFRTDIGGMSENQDECFVWRHEPSGSLVIGVLD 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16476.4668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNA2_ECTSI1.780e-2780.60PPM-type phosphatase domain-containing protein n=1... [more]
A0A835Z8N4_9STRA2.450e-1687.50Phosphatase 2C-like domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16476contigEcto-sp13_S_contig16476:147..2455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size201
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462866.3170722-CDS-Ecto-sp13_S_contig16476:146..2541681462866.3170722-CDS-Ecto-sp13_S_contig16476:146..254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16476 147..254 -
1681462866.3265545-CDS-Ecto-sp13_S_contig16476:2362..24401681462866.3265545-CDS-Ecto-sp13_S_contig16476:2362..2440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16476 2363..2440 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462866.3349583-UTR-Ecto-sp13_S_contig16476:2440..24551681462866.3349583-UTR-Ecto-sp13_S_contig16476:2440..2455Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16476 2441..2455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16476.4668.1prot_Ecto-sp13_S_contig16476.4668.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16476 147..2440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16476.4668.1

>prot_Ecto-sp13_S_contig16476.4668.1 ID=prot_Ecto-sp13_S_contig16476.4668.1|Name=mRNA_Ecto-sp13_S_contig16476.4668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
MGDRPLARPLAPLPQPQPALKPMQMKVRLSFRTDIGGMSENQDNCFIWRH
EPSGSFVIGVLD
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mRNA from alignment at Ecto-sp13_S_contig16476:147..2455-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16476.4668.1 ID=mRNA_Ecto-sp13_S_contig16476.4668.1|Name=mRNA_Ecto-sp13_S_contig16476.4668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16476:147..2455- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCCGACGCTGAGATGGGGGACAGGCCGCTGGCGCGGCCATTGGCCCC
ACTACCACAGCCGCAGCCGGCCCTCAAGCCGATGCAGATGAAGGTATGTA
TGTACGGCAGCAGCAGCAGCAGCGCCATGATCTCCTGCGGTGGTAGTTAG
TGGATGTTGCTGCAGTCGTTGCTGGTGGCCCTTGTCGCCGTTGTTGTGAA
ATTTGAAGCGCACCTCGGCACGACCCTCTCCCCAGAAAGGCAGTGCTCCA
TCGCATGCTTTCTTGTTGTCTGCCGTTGTGTGCAGCAGCGCCTTGTTCTC
CTGTGTGTTGTCGTTGTCATCGTCAGTGGTTATGGTGGTTCTGTCCGTGC
GGGTGTTGGATTCGCAGCACCTCCGAACCGCACTCTCCTCTAAGCGGCAT
GCACGCCGGTAACGGAAAACAATGGTATCGTCACAGAGCCCCTTCCCATG
AACACGATGAACACGGCACGCGATGCCCGTCAACCAAAAGCTCGCACAAG
GGAGAGAGGCAGAGGGGGAGGGAGGGAGAGAGAGACAGAGACTGAGAGAC
AGAGAGACAGAGAGACAGAGACAGAGACAGAGACAGACAGACGTAGACAG
AGACAGAGACACAGAGACAGAGAGAGACCGAACATGAAGAAGAGACCGCG
TCGTTGACAACTGCCATACAGGTGGAAAAATAAAAATTATCCTTTGCGCC
GCATTTTCCCCGAGCATGTGTTCCGTAACACCACACGTTGAGTTGAACAT
GCGGTGTTTGGAAATACATGTTCAAGAGTTGCGGCGTTCCGCTAGTTTTA
TTTCGTTGCCTCTGTGGCGGTTGCCAGTGCCACGGTCTCTGCTGCACGTT
CGGTCTGTGTGTCACTTTGCGTGTGATTGGTCCGTTGTGCGGTGGGTTTG
GGCCCCGTGCGGCCCTGCCAAGACCCACCGCCTGTCGTACCGCACAGAAA
ATGGGGGCATCGGTTCTATTTTTTTATCGTCGTTGGTGTTGTCCCTCGTC
TTGACATTCGGATAATGTTCGGAGAAGTTCTGGCGTCCACGGAGGACGTA
CCCACTTGCCCCGCCCCGAAGTAGTTGTCGGTAGGCACGGGCTGTAAGCG
ACGGCCACCGAACACATGAAGATGAATAGTGAGACATCGAATTTTTTAGG
AAATGGCTGCCAAGTTTCGTCATCGCGCGAACATGGTTCCTTTTTATCTC
TCTCAAGTGCCATCGACACTTTCGTAGACCCCCTGCTATTCTCTCCTTGT
GACTCCCCTTCCCTGTAGCATTTGGGTTGTGTTTATGTTCATTTTTATGG
TTGGTTGTGTTGTGTGTGTGGATGATAAACTCGGCCCCTCTTTCACCCTA
TCCCATCCTCGTTCATTTCATGGAAGTTGTGCTATGTGTGGGTGATAACT
CGTCTCCTTCACACCAAGATTGGCACGATCCCATCCTCTGGTGTTTGTTT
ATTTATTTCATTTGTGAGTGTGTTCGTCTCATCAATTCTGGCGCCGGTGA
ACAGGCCTCTCGTCGTATATCGTCTCCTAAAAACCGAAAATTGCTCAATT
TGTTGAGATTGTATGGATTAATTGCATTTGCCAGAGCAGTGGCATGTGTG
AGAGAATCCTTAGGCACTGCTGTTCCTCTGTACACGATTTCGCTCATACA
GAAGTTGGGCTGCACTGACTGACACCTGGCACCAGGGCTTTTCGTTGTTT
TTTTGCGTCGAGAAAGGAGTTTCGTTTTAGCCGTAACAAAGAGTGGGCCG
AGTGTGTGCTAGCGGACAGGGTTCTGTCCGTGACACTGCTCGTCTTGAGT
TCGATTCCCGCGACTTCGGCGAAATTTGCACATGGCCAACGATCGTCGAC
CGCATGGCGCTAGCGCACGAAATAATTGATCTTGCCTCCATGTAAATCGT
CTCCCCGAAACCAAGAACATACCCCAAACCAAAAACAAATAATGAATACT
TCGTTTGTGAACATCTGATTCTGGTCTTATACCTGACGTATCAGCCGGGG
TCACTCAAGAGGAAGGTCACATCAGTGGATTTTTTTTTTTTACTTGCCCC
ACCTTTCCCCTTGTGTTGCTTGCCTTGGTTCTTATGGCGAGAAGGGTGTG
TTGATGACAAACTCGGCCCTCATTTCACAACCCAACTAGTAGAAAATAGC
ACCACCCCCCGTGTCCTTTGTTTCTACCTGCCGTTGTGTGCGCCCCCCTA
GGTCCGCCTATCGTTCCGAACAGACATCGGGGGAATGTCCGAGAACCAAG
ATAACTGCTTCATCTGGCGCCACGAGCCCTCGGGGAGCTTCGTGATCGGG
GTGCTAGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16476:147..2455-

>mRNA_Ecto-sp13_S_contig16476.4668.1 ID=mRNA_Ecto-sp13_S_contig16476.4668.1|Name=mRNA_Ecto-sp13_S_contig16476.4668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16476:147..2455- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGACAGGCCGCTGGCGCGGCCATTGGCCCCACTACCACAGCCGCA
GCCGGCCCTCAAGCCGATGCAGATGAAGGTCCGCCTATCGTTCCGAACAG
ACATCGGGGGAATGTCCGAGAACCAAGATAACTGCTTCATCTGGCGCCAC
GAGCCCTCGGGGAGCTTCGTGATCGGGGTGCTAGAT
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