prot_Ecto-sp13_S_contig16472.4666.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16472.4666.1
Unique Nameprot_Ecto-sp13_S_contig16472.4666.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length297
Homology
BLAST of mRNA_Ecto-sp13_S_contig16472.4666.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 6.880e-54
Identity = 105/289 (36.33%), Postives = 159/289 (55.02%), Query Frame = 0
Query:    7 IFRMLENGCRARIRTSDDSESKTVFLRAGLHHVVLDSPEQADWSNVRDPSA--DIGCPQCKISKHELAKSNHDFRASKRTAEGVDASIEYESKGGTKAERNLREKRHEDVIPKEPNPSKALTFDRLLQSPFDNLHQDALNKSKRQVRFLLDVLDPAGLELVAARLALRQLLPPNASPIGESTTDGGWSGITANQIWTLSSILGLLFAPIFADGRTMGKYIRSAETRAVRERLDANDGTTHRAKEVCQGFRDLIQAISASTFMVRMGSYTDDTLDGLEKRQRESFKTHAR 293
            I R L+NGC+A     D  ++ T  +R GL    LDSP  + W+N +  +A  +  C  C + + +L    +D   + RTA+G+   +   +    K +R+   +    V+P+ PNP   + FDR+     D LHQ ALN  K+ + F++D LDPAG E+V AR A  ++LPPN SP+ + T+ GGWS +T  Q+W +SS    L APIF+    +G+Y+R+     V +R+  + GT      VC  F+DL++A S S F+VR  S+T + L  L+K Q E  K   R
Sbjct:    3 IIRRLQNGCKAEFSIGD-KQTVTALVRLGLLTANLDSPLHSLWTNQKHHNAKTERACQACVVPRRDLGNPKYDIVKNARTADGLREDLSRVAATEKKQDRDKLSRALGVVVPRYPNPQDEVAFDRVEGCGMDILHQSALNSGKKIMGFVMDALDPAGSEIVRARFAWCRMLPPNVSPMADITSAGGWSALTGQQLWLVSSSFPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVDPGTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFTAEGLRALQKSQLEQVKQATR 290          
BLAST of mRNA_Ecto-sp13_S_contig16472.4666.1 vs. uniprot
Match: A0A6H5JE27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE27_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.540e-22
Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = 0
Query:    7 IFRM-LENGCRARIRTSDDSES--------------KTVFLRAGLHHVVLDSPEQADWSNVRDPSADI--GCPQCKISKHELAKSNHDFRASKRTAEGVDASIEYESKGGTKAERNLREKRHEDVIPKEPNPSKALTFDRLLQSPFDNLHQDAL 143
            +FR  + +G +++ R   D ES                V +R GL  ++LDSPE +D +N ++ +      C +CK+ +  L    +D R ++RTAEGVDA IEY  +G TK ER  R K+   V+PK  NP K LTFDR LQ PFD LH D+L
Sbjct:  415 VFRSDMPDGIKSKRRRDQDVESVWEVTNQEENVGVSALVLVRGGLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRRHLGNPRYDIRQNRRTAEGVDADIEYVKQGATKTERVERAKQRGVVVPKVSNPLKKLTFDRQLQVPFDILHADSL 568          
BLAST of mRNA_Ecto-sp13_S_contig16472.4666.1 vs. uniprot
Match: A0A6H5JTN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN6_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 9.450e-21
Identity = 87/300 (29.00%), Postives = 116/300 (38.67%), Query Frame = 0
Query:    7 IFRM-LENGCRARIRTSDDSES--------------KTVFLRAGLHHVVLDSPEQADWSNVRDPSADI--GCPQCKISKHELAKSNHDFRASKRTAEGVDASIEYESKGGTKAERNLREKRHEDVIPKEPNPSKALTFDRLLQSPFDNLHQDALNKSKRQVRFLLDVLDPAGLELVAARLALRQLLPPNASPIGESTTDGGWSGITANQIWTLSSILGLLFAPIFADGRTMGKYIRSAETRAVRERLDANDGTTHRAKEVCQGFRDLIQAISASTFMVRMGSYTDDTLDGLEKRQRESFK 289
            +FR  + +G +++ R   D ES                V +R  L  ++LDSPE +D +N ++ +      C +CK+ +  L    +D R ++RTAEGVDA+IEY  +G TK E   R K+   V+PK    SK LTFDR LQ PFD LH D+L                                                                                                         VC+ FRDL++A SASTFMVR+GSYTD  L  LEK QRE  K
Sbjct:  198 VFRSDMPDGIKSKRRRDQDVESVWEVTNQEENVGVSALVLVRGRLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRRHLGNPRYDIRQNRRTAEGVDANIEYVKQGATKTEGVERAKQRGVVVPKV---SKKLTFDRQLQIPFDILHADSL---------------------------------------------------------------------------------------------------------VCRAFRDLMEACSASTFMVRLGSYTDAELRVLEKWQREQVK 389          
BLAST of mRNA_Ecto-sp13_S_contig16472.4666.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.290e-12
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 0
Query:  152 FLLDVLDPAGLELVAARLALRQLLPPNASPIGESTTDGGWSGITANQIWTLSSILGLLFAPIFAD 216
            F++D LDPAG ++V AR A R++LP N SPI + T+ GGWS +T  Q+W +SSI   L AP+F+ 
Sbjct:  608 FVMDALDPAGSDIVRARFAWRRMLPRNVSPIADITSAGGWSALTGQQLWIVSSIFPFLLAPMFSS 672          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16472.4666.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FWW9_ECTSI6.880e-5436.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JE27_9PHAE2.540e-2240.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTN6_9PHAE9.450e-2129.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGI1_9PHAE8.290e-1250.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 216..296
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..171
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 191..215
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..151
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 172..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16472contigEcto-sp13_S_contig16472:554..3379 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16472.4666.1mRNA_Ecto-sp13_S_contig16472.4666.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16472 544..3497 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16472.4666.1 ID=prot_Ecto-sp13_S_contig16472.4666.1|Name=mRNA_Ecto-sp13_S_contig16472.4666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=297bp
MLPLTSIFRMLENGCRARIRTSDDSESKTVFLRAGLHHVVLDSPEQADWS
NVRDPSADIGCPQCKISKHELAKSNHDFRASKRTAEGVDASIEYESKGGT
KAERNLREKRHEDVIPKEPNPSKALTFDRLLQSPFDNLHQDALNKSKRQV
RFLLDVLDPAGLELVAARLALRQLLPPNASPIGESTTDGGWSGITANQIW
TLSSILGLLFAPIFADGRTMGKYIRSAETRAVRERLDANDGTTHRAKEVC
QGFRDLIQAISASTFMVRMGSYTDDTLDGLEKRQRESFKTHARERP*
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